Wall clock time and date at job start Sat Apr 11 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47281 * 2 1 4 4 H 1.09004 * 109.46605 * 54.55760 * 3 2 1 5 5 C 1.52997 * 109.47200 * 174.55468 * 3 2 1 6 6 N 1.46502 * 109.46851 * 175.00185 * 5 3 2 7 7 C 1.34777 * 120.00067 * 179.97438 * 6 5 3 8 8 O 1.21697 * 119.99827 * 4.80549 * 7 6 5 9 9 C 1.46674 * 120.00505 * 184.80777 * 7 6 5 10 10 C 1.37872 * 126.23007 * 5.11906 * 9 7 6 11 11 C 1.39839 * 107.08637 * 180.02562 * 10 9 7 12 12 C 1.35448 * 107.86374 * 359.97438 * 11 10 9 13 13 N 1.35535 * 108.87017 * 359.73574 * 12 11 10 14 14 C 1.46509 * 125.67828 * 180.30489 * 13 12 11 15 15 C 1.53006 * 109.46496 * 263.75771 * 14 13 12 16 16 N 1.46893 * 109.47326 * 294.56012 * 3 2 1 17 17 C 1.46904 * 110.99837 * 297.05342 * 16 3 2 18 18 C 1.50699 * 109.47349 * 184.44483 * 17 16 3 19 19 O 1.21296 * 119.99876 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00276 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00202 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99903 * 359.97438 * 21 20 18 23 23 C 1.38941 * 120.00329 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00595 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99932 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47419 * 89.99529 * 25 23 21 27 27 H 1.48501 * 109.47034 * 210.00261 * 25 23 21 28 28 H 1.48507 * 109.46818 * 329.99969 * 25 23 21 29 29 H 1.08999 * 109.47029 * 295.70780 * 1 2 3 30 30 H 1.09000 * 109.47141 * 55.71179 * 1 2 3 31 31 H 1.09007 * 109.46682 * 175.71224 * 1 2 3 32 32 H 1.09008 * 109.47229 * 240.00508 * 2 1 3 33 33 H 1.08999 * 109.47419 * 120.00318 * 2 1 3 34 34 H 1.08998 * 109.47012 * 295.00113 * 5 3 2 35 35 H 1.09000 * 109.47097 * 55.00268 * 5 3 2 36 36 H 0.97002 * 120.00455 * 0.02562 * 6 5 3 37 37 H 1.08007 * 126.46036 * 359.96412 * 10 9 7 38 38 H 1.08000 * 126.06890 * 180.02562 * 11 10 9 39 39 H 1.07994 * 125.56572 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47005 * 23.75371 * 14 13 12 41 41 H 1.08991 * 109.46925 * 143.75893 * 14 13 12 42 42 H 1.08997 * 109.47017 * 60.00513 * 15 14 13 43 43 H 1.09000 * 109.46584 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47167 * 299.99500 * 15 14 13 45 45 H 1.00899 * 111.00327 * 61.00576 * 16 3 2 46 46 H 1.08999 * 109.47140 * 304.44420 * 17 16 3 47 47 H 1.09002 * 109.47170 * 64.44762 * 17 16 3 48 48 H 0.97000 * 119.99404 * 359.97438 * 20 18 17 49 49 H 0.96994 * 120.00167 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5993 1.9837 0.8373 5 6 3.5639 1.4447 0.1369 6 7 4.0629 2.8169 0.0172 7 6 5.3849 3.0634 0.1072 8 8 6.1713 2.1393 0.2000 9 6 5.8759 4.4454 0.0933 10 6 5.1008 5.5856 0.0930 11 6 5.9751 6.6768 0.0768 12 6 7.2409 6.1949 0.0683 13 7 7.1944 4.8405 0.0844 14 6 8.3545 3.9457 0.0881 15 6 8.6540 3.4933 -1.3426 16 7 1.6606 2.0961 -1.2596 17 6 2.2944 1.4343 -2.4078 18 6 1.9712 2.1955 -3.6677 19 8 1.2811 3.1916 -3.6143 20 7 2.4489 1.7694 -4.8538 21 6 2.1553 2.4622 -5.9998 22 1 1.5409 3.3491 -5.9522 23 6 2.6482 2.0233 -7.2225 24 7 2.3664 2.6870 -8.3211 25 14 3.7104 0.4889 -7.3049 26 1 2.8459 -0.7013 -7.5073 27 1 4.6636 0.6069 -8.4375 28 1 4.4663 0.3414 -6.0351 29 1 -0.3633 0.4458 0.9259 30 1 -0.3633 0.5789 -0.8491 31 1 -0.3633 -1.0249 -0.0768 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8418 1.0405 1.1103 35 1 4.0002 0.8294 -0.6500 36 1 3.4419 3.5481 -0.1260 37 1 4.0216 5.6281 0.1025 38 1 5.6914 7.7189 0.0728 39 1 8.1404 6.7924 0.0550 40 1 9.2191 4.4733 0.4908 41 1 8.1395 3.0747 0.7071 42 1 8.8690 4.3643 -1.9615 43 1 9.5174 2.8279 -1.3399 44 1 7.7895 2.9656 -1.7453 45 1 0.6575 2.1221 -1.3657 46 1 3.3746 1.4123 -2.2637 47 1 1.9183 0.4148 -2.4927 48 1 3.0011 0.9731 -4.8964 49 1 2.7108 2.3808 -9.1746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732222331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:54 Heat of formation + Delta-G solvation = -21.709089 kcal Electronic energy + Delta-G solvation = -29750.412066 eV Core-core repulsion = 25713.424139 eV Total energy + Delta-G solvation = -4036.987927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.42128 -39.47148 -38.50765 -37.33825 -34.63054 -33.98367 -33.69099 -31.94109 -31.57733 -30.02485 -29.36067 -28.22528 -26.68316 -24.22664 -23.80762 -23.53466 -21.96852 -20.55383 -20.41606 -19.47163 -19.13475 -18.41616 -17.79246 -16.78800 -16.05553 -15.79822 -15.54025 -15.29255 -15.04025 -14.73573 -14.59668 -14.37798 -14.07700 -13.93865 -13.78232 -13.69510 -13.29035 -13.14066 -12.68110 -12.53793 -12.51132 -12.36579 -12.29564 -12.26174 -12.02097 -11.88472 -11.82042 -11.43342 -11.32044 -11.18105 -10.92950 -10.87594 -10.58311 -9.96330 -9.93988 -9.55241 -9.05999 -8.76692 -8.61710 -8.21239 -8.19455 -8.14451 -6.29734 -3.80808 1.49310 2.58782 2.74581 3.04398 3.07535 3.15890 3.36347 3.46019 3.76094 4.09651 4.13173 4.53405 4.57752 4.70225 4.86770 4.87665 4.91579 4.93694 4.97355 5.15034 5.18360 5.23595 5.32629 5.33754 5.36861 5.47347 5.51328 5.56104 5.65818 5.69680 5.70981 5.80338 5.81592 5.95993 6.01733 6.02528 6.06077 6.12336 6.18760 6.44599 6.74724 6.97937 7.02320 7.18695 7.49447 7.59553 7.62359 8.16136 8.26208 8.61361 8.96698 9.44315 9.84721 10.83458 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.003854 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.139128 B = 7263.696844 C = 9202.320258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.093 0.907 5 C 0.129 3.871 6 N -0.703 5.703 7 C 0.588 3.412 8 O -0.559 6.559 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.208 4.208 12 C 0.012 3.988 13 N -0.409 5.409 14 C 0.098 3.902 15 C -0.164 4.164 16 N -0.658 5.658 17 C 0.040 3.960 18 C 0.452 3.548 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.877 3.123 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.414 0.586 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.355 0.645 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.369 0.631 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 -1.634 20.927 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.111 0.889 5 C 0.004 3.996 6 N -0.354 5.354 7 C 0.376 3.624 8 O -0.440 6.440 9 C -0.164 4.164 10 C -0.162 4.162 11 C -0.232 4.232 12 C -0.124 4.124 13 N -0.082 5.082 14 C -0.023 4.023 15 C -0.222 4.222 16 N -0.291 5.291 17 C -0.093 4.093 18 C 0.238 3.762 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.703 3.297 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.176 0.824 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.202 0.798 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.736 -1.371 20.842 22.641 hybrid contribution 0.154 -1.660 -0.563 1.759 sum 8.890 -3.030 20.279 22.349 Atomic orbital electron populations 1.21764 0.95139 1.02029 1.02138 1.22208 0.96886 0.97884 1.02985 1.21943 0.94177 0.93595 0.94075 0.88914 1.21423 0.92921 0.83401 1.01822 1.45466 1.06727 1.10368 1.72847 1.16991 0.82603 0.86564 0.76275 1.90757 1.55479 1.45827 1.51928 1.20014 0.84006 0.94045 1.18314 1.21419 0.99163 0.90958 1.04650 1.20821 0.91873 0.99177 1.11295 1.21981 0.99807 0.82440 1.08138 1.44045 1.05312 1.06056 1.52806 1.22014 0.86008 0.94493 0.99811 1.22078 1.02996 1.01871 0.95241 1.60221 1.15628 1.53634 0.99637 1.21813 1.00704 0.95837 0.90927 1.19686 0.85148 0.87531 0.83885 1.90562 1.40957 1.27002 1.85983 1.42211 1.47306 1.26521 1.07050 1.19421 1.30856 1.10462 0.82465 0.86264 1.25016 0.97891 0.98025 0.95129 1.69618 1.44909 1.39287 0.98375 0.86710 0.80936 0.83537 0.78470 1.19639 1.20155 1.19524 0.92456 0.92330 0.92498 0.91234 0.91247 0.91175 0.91286 0.74858 0.83728 0.84085 0.81709 0.89611 0.87764 0.92284 0.90849 0.91346 0.82406 0.89357 0.93420 0.79809 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.78 37.16 0.36 -0.97 16 2 C -0.16 -1.43 5.26 -26.73 -0.14 -1.57 16 3 C 0.07 0.74 2.71 -67.72 -0.18 0.56 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.13 1.46 4.56 -4.04 -0.02 1.44 16 6 N -0.70 -8.97 5.36 -61.62 -0.33 -9.30 16 7 C 0.59 8.61 7.77 -12.86 -0.10 8.51 16 8 O -0.56 -9.22 14.56 5.19 0.08 -9.14 16 9 C -0.05 -0.70 6.89 -81.98 -0.56 -1.27 16 10 C -0.14 -1.73 10.35 -39.12 -0.40 -2.13 16 11 C -0.21 -2.38 10.81 -39.98 -0.43 -2.81 16 12 C 0.01 0.12 11.37 -16.91 -0.19 -0.07 16 13 N -0.41 -5.02 2.76 -112.87 -0.31 -5.34 16 14 C 0.10 1.01 6.15 -4.03 -0.02 0.99 16 15 C -0.16 -1.77 10.24 37.16 0.38 -1.39 16 16 N -0.66 -8.97 5.42 -107.99 -0.59 -9.55 16 17 C 0.04 0.64 5.38 -4.97 -0.03 0.61 16 18 C 0.45 10.13 7.83 -10.98 -0.09 10.04 16 19 O -0.56 -14.77 15.88 5.54 0.09 -14.68 16 20 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 21 C -0.30 -8.64 10.16 -14.94 -0.15 -8.79 16 22 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 23 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 24 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 25 Si 0.88 19.74 27.74 -169.99 -4.71 15.02 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -5.63 6.52 56.52 0.37 -5.26 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.58 6.62 -51.93 -0.34 0.24 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.69 6.30 -51.92 -0.33 0.36 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 36 H 0.41 5.17 7.08 -40.82 -0.29 4.88 16 37 H 0.15 1.64 7.48 -52.48 -0.39 1.25 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 41 H 0.10 1.22 6.60 -51.93 -0.34 0.87 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 45 H 0.35 4.97 6.96 -39.29 -0.27 4.70 16 46 H 0.09 1.40 6.12 -51.93 -0.32 1.09 16 47 H 0.05 0.68 6.49 -51.93 -0.34 0.34 16 48 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 49 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -34.45 397.04 -8.15 -42.60 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -7.39 Total: 19.63 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.68 Total: 4.22 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.51 Total: -63.64 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.16 Total: -23.82 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.45 -8.15 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732222331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.892 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds