Wall clock time and date at job start Sat Apr 11 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00113 * 2 1 4 4 C 1.50701 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.30443 * 125.98821 * 270.16802 * 4 3 2 6 6 N 1.39937 * 108.89342 * 180.26611 * 5 4 3 7 7 C 1.46502 * 125.74924 * 179.73865 * 6 5 4 8 8 C 1.34255 * 108.49438 * 359.73598 * 6 5 4 9 9 C 1.38045 * 107.41588 * 359.97438 * 8 6 5 10 10 C 1.47432 * 126.41526 * 179.97438 * 9 8 6 11 11 O 1.21595 * 120.00339 * 230.50820 * 10 9 8 12 12 N 1.34781 * 119.99770 * 50.51520 * 10 9 8 13 13 C 1.46929 * 120.62972 * 355.61879 * 12 10 9 14 14 C 1.53191 * 108.77432 * 126.41507 * 13 12 10 15 15 C 1.53042 * 109.31335 * 54.63597 * 14 13 12 16 16 H 1.09004 * 109.44789 * 58.64440 * 15 14 13 17 17 N 1.46490 * 109.46493 * 178.61359 * 15 14 13 18 18 C 1.36932 * 120.00217 * 275.06958 * 17 15 14 19 19 H 1.08002 * 120.00120 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00410 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00367 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99872 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47555 * 269.99946 * 22 20 18 24 24 H 1.48502 * 109.47059 * 30.00012 * 22 20 18 25 25 H 1.48501 * 109.47453 * 149.99855 * 22 20 18 26 26 C 1.53040 * 109.53731 * 298.63676 * 15 14 13 27 27 H 1.09001 * 109.50209 * 301.41053 * 26 15 14 28 28 C 1.53003 * 109.49931 * 181.31181 * 26 15 14 29 29 C 1.46920 * 120.63166 * 175.64618 * 12 10 9 30 30 H 1.09004 * 109.47394 * 300.00506 * 1 2 3 31 31 H 1.09002 * 109.46758 * 60.00472 * 1 2 3 32 32 H 1.08997 * 109.46760 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46966 * 59.99137 * 3 2 1 34 34 H 1.09003 * 109.46561 * 299.99764 * 3 2 1 35 35 H 1.09002 * 109.46780 * 269.98983 * 7 6 5 36 36 H 1.08994 * 109.47568 * 29.99818 * 7 6 5 37 37 H 1.09002 * 109.46941 * 149.99793 * 7 6 5 38 38 H 1.07996 * 126.29484 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.59064 * 246.20686 * 13 12 10 40 40 H 1.09002 * 109.58527 * 6.48846 * 13 12 10 41 41 H 1.09004 * 109.49875 * 294.68651 * 14 13 12 42 42 H 1.08994 * 109.50024 * 174.58740 * 14 13 12 43 43 H 0.97000 * 120.00341 * 95.06654 * 17 15 14 44 44 H 0.96998 * 120.00058 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.46664 * 60.00009 * 28 26 15 46 46 H 1.09000 * 109.47442 * 179.97438 * 28 26 15 47 47 H 1.08997 * 109.47273 * 300.00089 * 28 26 15 48 48 H 1.09002 * 109.58560 * 113.79520 * 29 12 10 49 49 H 1.09003 * 109.70210 * 353.44113 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2760 1.1230 1.0564 6 7 5.6101 1.0247 0.6457 7 6 6.7741 0.9374 1.5310 8 6 5.6435 1.0237 -0.6965 9 6 4.3406 1.1201 -1.1423 10 6 3.8968 1.1548 -2.5478 11 8 3.1366 2.0261 -2.9240 12 7 4.3337 0.2207 -3.4157 13 6 5.3257 -0.7806 -3.0011 14 6 4.7781 -2.1765 -3.3150 15 6 4.3931 -2.2482 -4.7945 16 1 5.2676 -2.0310 -5.4080 17 7 3.8999 -3.5919 -5.1060 18 6 4.7834 -4.5895 -5.4214 19 1 5.8438 -4.3856 -5.4409 20 6 4.3161 -5.8629 -5.7160 21 7 5.1653 -6.8219 -6.0187 22 14 2.4820 -6.2157 -5.6830 23 1 2.0869 -6.6557 -4.3209 24 1 1.7345 -4.9836 -6.0415 25 1 2.1664 -7.2881 -6.6606 26 6 3.2966 -1.2218 -5.0883 27 1 2.4311 -1.4232 -4.4572 28 6 2.8894 -1.3167 -6.5601 29 6 3.8274 0.1849 -4.7944 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8901 35 1 7.1388 1.9407 1.7516 36 1 6.4885 0.4423 2.4591 37 1 7.5612 0.3644 1.0409 38 1 6.5273 0.9593 -1.3139 39 1 6.2556 -0.6216 -3.5469 40 1 5.5104 -0.6906 -1.9306 41 1 3.8986 -2.3690 -2.7005 42 1 5.5424 -2.9236 -3.1014 43 1 2.9476 -3.7752 -5.0888 44 1 4.8387 -7.7117 -6.2249 45 1 2.5145 -2.3186 -6.7694 46 1 2.1081 -0.5858 -6.7688 47 1 3.7551 -1.1137 -7.1905 48 1 4.6352 0.4227 -5.4866 49 1 3.0222 0.9106 -4.9092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036078708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:22 Heat of formation + Delta-G solvation = 20.134615 kcal Electronic energy + Delta-G solvation = -30465.974710 eV Core-core repulsion = 26430.801262 eV Total energy + Delta-G solvation = -4035.173448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.72138 -39.70190 -37.92590 -37.54507 -34.69397 -33.87993 -32.95216 -31.54086 -30.71538 -29.77054 -29.18461 -26.97696 -26.33227 -25.48454 -24.76363 -22.90831 -21.89311 -21.52187 -20.66974 -19.86881 -19.11037 -17.57404 -17.19488 -16.71270 -16.48810 -15.94672 -15.79243 -15.56657 -15.27449 -14.90689 -14.83675 -14.33126 -13.94576 -13.77312 -13.65150 -13.28984 -13.18896 -12.99777 -12.78766 -12.49059 -12.41939 -12.37711 -12.27548 -11.87278 -11.72527 -11.53407 -11.41731 -11.07218 -11.01608 -10.84452 -10.64233 -10.48096 -10.21473 -9.93296 -9.74231 -9.72815 -9.67082 -9.57227 -8.93284 -8.78476 -8.43302 -7.25639 -5.77501 -3.12294 1.39354 1.93950 2.07219 2.87360 3.29908 3.37992 3.41745 3.46242 3.77369 4.20198 4.41028 4.59436 4.65715 4.76460 4.80485 4.89908 5.03879 5.08074 5.10026 5.14242 5.23919 5.26150 5.30148 5.31996 5.36860 5.48893 5.57031 5.57661 5.60335 5.63921 5.74682 5.90002 6.01513 6.06719 6.14408 6.17374 6.31811 6.35194 6.46496 6.54320 6.59588 6.72240 6.83613 6.96464 6.99926 7.32854 7.55378 7.98521 8.29548 8.41906 9.20612 9.93671 10.14001 11.40929 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003411 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.472196 B = 8207.076350 C = 8495.751530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.138 3.862 4 C 0.122 3.878 5 N -0.279 5.279 6 N -0.359 5.359 7 C 0.097 3.903 8 C 0.092 3.908 9 C -0.261 4.261 10 C 0.598 3.402 11 O -0.548 6.548 12 N -0.600 5.600 13 C 0.103 3.897 14 C -0.151 4.151 15 C 0.190 3.810 16 H 0.056 0.944 17 N -0.745 5.745 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.276 1.276 25 H -0.292 1.292 26 C -0.114 4.114 27 H 0.069 0.931 28 C -0.137 4.137 29 C 0.124 3.876 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.187 0.813 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 19.153 13.032 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.045 4.045 5 N -0.102 5.102 6 N -0.138 5.138 7 C -0.044 4.044 8 C -0.058 4.058 9 C -0.276 4.276 10 C 0.385 3.615 11 O -0.427 6.427 12 N -0.331 5.331 13 C -0.020 4.020 14 C -0.192 4.192 15 C 0.080 3.920 16 H 0.074 0.926 17 N -0.387 5.387 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.218 1.218 26 C -0.134 4.134 27 H 0.087 0.913 28 C -0.195 4.195 29 C 0.001 3.999 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.204 0.796 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.030 19.262 14.131 23.889 hybrid contribution -1.221 -0.424 -0.727 1.483 sum -1.250 18.837 13.404 23.153 Atomic orbital electron populations 1.22768 0.80331 1.03124 1.00086 1.87955 1.20054 1.26503 1.95492 1.20680 0.85204 0.85850 1.02292 1.21786 0.95389 0.98217 0.89114 1.77123 0.86439 1.24203 1.22448 1.48270 1.06153 1.54603 1.04820 1.22017 0.83861 1.03695 0.94808 1.23036 0.98819 0.98947 0.84995 1.20127 0.92538 1.20427 0.94512 1.17263 0.79874 0.80808 0.83509 1.90724 1.37062 1.36324 1.78548 1.48010 1.42878 1.30287 1.11950 1.21999 0.90839 0.88790 1.00389 1.22620 1.01830 0.94258 1.00466 1.20162 0.94627 0.84730 0.92484 0.92609 1.42770 1.05272 1.06531 1.84129 1.19049 0.90853 0.88293 1.38841 0.89242 1.24639 0.96844 0.95893 1.01638 1.69695 1.32754 1.02118 1.53710 0.86595 0.87062 0.77557 0.77575 1.21173 1.20264 1.21827 1.21791 0.99518 0.94429 0.97665 0.91251 1.21671 1.00766 1.02261 0.94788 1.21662 0.99510 0.97685 0.81040 0.93993 0.93669 0.89291 0.91587 0.89878 0.90247 0.88743 0.88785 0.79645 0.91411 0.90196 0.92114 0.90312 0.80623 0.93108 0.91438 0.93586 0.92594 0.91412 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.45 10.69 -35.23 -0.38 -5.82 16 3 C 0.14 1.80 6.33 36.01 0.23 2.03 16 4 C 0.12 1.72 6.89 -82.02 -0.57 1.16 16 5 N -0.28 -3.73 12.50 33.89 0.42 -3.30 16 6 N -0.36 -3.66 3.98 -67.60 -0.27 -3.93 16 7 C 0.10 0.50 11.44 59.85 0.68 1.19 16 8 C 0.09 0.94 9.13 -16.56 -0.15 0.79 16 9 C -0.26 -3.56 5.14 -105.06 -0.54 -4.10 16 10 C 0.60 9.11 7.35 -12.51 -0.09 9.02 16 11 O -0.55 -9.69 15.66 5.28 0.08 -9.60 16 12 N -0.60 -8.49 2.97 -174.04 -0.52 -9.00 16 13 C 0.10 1.34 5.91 -3.71 -0.02 1.31 16 14 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 15 C 0.19 3.46 2.19 -67.89 -0.15 3.31 16 16 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 17 N -0.75 -16.96 4.21 -53.39 -0.22 -17.18 16 18 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 19 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 22 Si 0.88 22.00 27.73 -169.99 -4.71 17.28 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 C -0.11 -1.81 2.46 -90.50 -0.22 -2.03 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 C -0.14 -2.10 9.03 37.16 0.34 -1.76 16 29 C 0.12 1.74 5.70 -3.71 -0.02 1.72 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.11 7.20 -51.93 -0.37 0.73 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.19 1.24 7.63 -52.49 -0.40 0.84 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.94 4.58 -51.93 -0.24 0.70 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.36 8.29 5.36 -40.82 -0.22 8.07 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.07 1.19 7.36 -51.93 -0.38 0.80 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.09 1.30 7.04 -51.93 -0.37 0.93 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -35.81 394.21 -6.59 -42.40 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.91 Total: 6.54 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 0.19 Total: 4.83 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.19 Total: -61.56 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.29 Total: -15.43 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.81 -6.59 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036078708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.534 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds