Wall clock time and date at job start Sat Apr 11 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42891 * 114.00205 * 2 1 4 4 C 1.53003 * 109.47488 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47529 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.75190 * 124.99708 * 5 4 3 7 7 C 1.38050 * 107.41571 * 179.97438 * 6 5 4 8 8 C 1.47424 * 126.41539 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00052 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00309 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00399 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46954 * 180.02562 * 11 10 8 13 13 H 1.08993 * 110.89156 * 54.30053 * 12 11 10 14 14 C 1.54912 * 111.03530 * 290.39179 * 12 11 10 15 15 N 1.47425 * 104.82973 * 204.90287 * 14 12 11 16 16 C 1.36946 * 125.65025 * 204.08083 * 15 14 12 17 17 H 1.07999 * 119.99557 * 354.84687 * 16 15 14 18 18 C 1.38806 * 120.00004 * 174.84177 * 16 15 14 19 19 N 1.31612 * 120.00403 * 7.05747 * 18 16 15 20 20 Si 1.86799 * 119.99652 * 187.05539 * 18 16 15 21 21 H 1.48502 * 109.47251 * 94.99360 * 20 18 16 22 22 H 1.48510 * 109.47237 * 214.98587 * 20 18 16 23 23 H 1.48493 * 109.47749 * 334.98967 * 20 18 16 24 24 C 1.47019 * 108.70628 * 24.13606 * 15 14 12 25 25 C 1.54328 * 107.26954 * 358.93417 * 24 15 14 26 26 H 1.09003 * 110.71690 * 96.17451 * 25 24 15 27 27 C 1.53002 * 110.87250 * 219.37432 * 25 24 15 28 28 C 1.41289 * 107.16832 * 0.22908 * 7 6 5 29 29 N 1.30449 * 108.02287 * 359.61495 * 28 7 6 30 30 H 1.09004 * 109.47354 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47464 * 299.99915 * 1 2 3 32 32 H 1.08998 * 109.47461 * 60.00073 * 1 2 3 33 33 H 1.09001 * 109.47350 * 59.99839 * 3 2 1 34 34 H 1.09008 * 109.47493 * 299.99955 * 3 2 1 35 35 H 1.09001 * 109.47074 * 59.99526 * 4 3 2 36 36 H 1.09000 * 109.46994 * 299.99864 * 4 3 2 37 37 H 1.07996 * 126.29316 * 359.96161 * 6 5 4 38 38 H 0.97000 * 119.99858 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46856 * 60.00084 * 11 10 8 40 40 H 1.08995 * 109.46774 * 300.00226 * 11 10 8 41 41 H 1.08993 * 110.36988 * 323.74579 * 14 12 11 42 42 H 1.09002 * 110.36597 * 86.07294 * 14 12 11 43 43 H 0.97000 * 120.00448 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.88502 * 239.52010 * 24 15 14 45 45 H 1.08994 * 110.01660 * 118.42674 * 24 15 14 46 46 H 1.08997 * 109.46503 * 173.61093 * 27 25 24 47 47 H 1.08996 * 109.47149 * 293.61110 * 27 25 24 48 48 H 1.09004 * 109.46772 * 53.61631 * 27 25 24 49 49 H 1.08008 * 125.98735 * 179.74005 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 5.0217 2.9855 0.8908 7 6 5.3275 4.2837 0.5342 8 6 6.2631 5.1853 1.2307 9 8 6.8525 4.8015 2.2228 10 7 6.4660 6.4345 0.7674 11 6 7.3962 7.3303 1.4592 12 6 7.4414 8.6770 0.7345 13 1 6.4404 9.0947 0.6275 14 6 8.1377 8.5440 -0.6429 15 7 8.6542 9.8933 -0.9365 16 6 8.9217 10.3917 -2.1837 17 1 8.8347 9.7531 -3.0503 18 6 9.3044 11.7174 -2.3339 19 7 9.5451 12.4573 -1.2723 20 14 9.4779 12.4515 -4.0428 21 1 8.2174 13.1429 -4.4149 22 1 10.5982 13.4264 -4.0514 23 1 9.7561 11.3692 -5.0207 24 6 8.8358 10.6148 0.3315 25 6 8.3833 9.6703 1.4650 26 1 9.2374 9.1468 1.8947 27 6 7.6235 10.4412 2.5464 28 6 4.5714 4.5883 -0.6198 29 7 3.8690 3.5343 -0.9319 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 5.4245 2.4421 1.7327 38 1 5.9962 6.7405 -0.0241 39 1 8.3917 6.8865 1.4647 40 1 7.0600 7.4812 2.4850 41 1 8.9575 7.8281 -0.5861 42 1 7.4188 8.2393 -1.4035 43 1 9.8123 13.3838 -1.3773 44 1 8.2248 11.5175 0.3352 45 1 9.8852 10.8773 0.4645 46 1 7.2178 9.7397 3.2754 47 1 8.3031 11.1317 3.0457 48 1 6.8082 11.0011 2.0883 49 1 4.5759 5.5283 -1.1516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093164792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:51:28 Heat of formation + Delta-G solvation = 16.020577 kcal Electronic energy + Delta-G solvation = -28298.720383 eV Core-core repulsion = 24263.368537 eV Total energy + Delta-G solvation = -4035.351846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 6.21 seconds Orbital eigenvalues (eV) -41.66867 -39.28792 -38.50559 -37.85508 -34.62463 -34.28491 -32.88674 -30.78309 -30.70720 -30.07621 -28.83165 -26.86351 -25.95897 -25.14744 -23.98199 -23.26671 -22.25079 -21.02111 -20.26623 -19.92571 -19.18591 -18.16922 -17.09655 -16.85043 -16.69621 -16.00372 -15.83321 -15.74743 -15.33361 -14.89298 -14.77740 -14.46274 -14.21230 -13.83339 -13.74834 -13.50337 -13.11347 -13.07732 -12.85079 -12.58025 -12.48653 -12.22987 -11.92667 -11.79088 -11.63931 -11.33995 -11.28796 -11.18879 -10.79188 -10.76183 -10.32260 -10.15413 -9.98858 -9.95011 -9.93240 -9.88147 -9.64451 -9.52791 -9.08806 -8.75058 -8.56069 -6.80407 -5.70771 -3.02860 1.27263 1.80954 1.96868 3.19481 3.36719 3.40857 3.46244 3.47593 3.48216 4.06340 4.30662 4.46724 4.49528 4.51427 4.64921 4.77574 4.79141 4.92876 4.99639 5.08081 5.12853 5.15140 5.24588 5.25854 5.35769 5.51265 5.55342 5.59891 5.80512 5.91917 6.06521 6.11230 6.16779 6.22536 6.32743 6.37935 6.50408 6.51415 6.54593 6.61088 6.66126 6.80343 6.98519 7.21566 7.58921 7.67169 7.67528 7.86020 8.27989 8.36625 9.23731 9.84447 10.51173 11.41199 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.001969 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.075343 B =14213.585197 C =15391.767607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.288 4.288 8 C 0.592 3.408 9 O -0.556 6.556 10 N -0.719 5.719 11 C 0.135 3.865 12 C -0.113 4.113 13 H 0.080 0.920 14 C 0.142 3.858 15 N -0.606 5.606 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.183 3.817 25 C -0.110 4.110 26 H 0.067 0.933 27 C -0.134 4.134 28 C 0.087 3.913 29 N -0.297 5.297 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.189 0.811 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.019 0.981 42 H 0.036 0.964 43 H 0.252 0.748 44 H 0.050 0.950 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.018 -21.502 6.149 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.302 4.302 8 C 0.380 3.620 9 O -0.435 6.435 10 N -0.370 5.370 11 C 0.012 3.988 12 C -0.133 4.133 13 H 0.099 0.901 14 C 0.015 3.985 15 N -0.332 5.332 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.058 3.942 25 C -0.130 4.130 26 H 0.086 0.914 27 C -0.192 4.192 28 C -0.102 4.102 29 N -0.116 5.116 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.206 0.794 38 H 0.234 0.766 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.315 -22.373 5.928 28.317 hybrid contribution 0.289 1.225 -0.765 1.473 sum -16.025 -21.148 5.163 27.032 Atomic orbital electron populations 1.22789 0.79831 1.03174 1.00461 1.87773 1.20674 1.26856 1.95620 1.22652 0.92433 0.85422 1.02194 1.21488 0.92761 0.78664 1.05768 1.48319 1.33107 1.12086 1.20885 1.22989 0.90644 0.94323 0.94094 1.20333 1.10199 0.96382 1.03319 1.17186 0.80557 0.81095 0.83197 1.90764 1.50384 1.75815 1.26551 1.45824 1.46133 1.13219 1.31782 1.21379 0.92959 0.88829 0.95665 1.22675 1.00108 0.93395 0.97094 0.90138 1.21583 0.94971 0.89094 0.92813 1.44464 1.76093 1.09912 1.02762 1.19056 1.39593 0.93694 0.83360 0.90479 1.24811 1.01757 0.96524 0.97283 1.69974 1.52180 1.07775 1.26718 0.86139 0.77259 0.78968 0.83661 1.21667 1.21810 1.20671 1.21218 0.99426 0.92099 0.81439 1.22434 0.96921 0.96817 0.96848 0.91441 1.21691 1.00077 0.99530 0.97874 1.24174 0.93297 0.97840 0.94853 1.77176 1.24514 0.96757 1.13196 0.89116 0.93762 0.93625 0.92534 0.91385 0.88267 0.87270 0.79379 0.76553 0.91384 0.91645 0.96345 0.94562 0.93789 0.93204 0.94286 0.93626 0.92820 0.92732 0.79036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.76 10.70 -35.23 -0.38 -3.14 16 3 C 0.05 0.33 6.11 37.16 0.23 0.56 16 4 C 0.13 0.82 6.86 -4.04 -0.03 0.80 16 5 N -0.36 -3.24 3.65 -60.81 -0.22 -3.46 16 6 C 0.13 1.23 11.25 -16.56 -0.19 1.04 16 7 C -0.29 -3.25 6.13 -105.07 -0.64 -3.89 16 8 C 0.59 8.14 7.81 -12.52 -0.10 8.05 16 9 O -0.56 -9.44 16.90 5.27 0.09 -9.35 16 10 N -0.72 -9.19 5.44 -61.39 -0.33 -9.53 16 11 C 0.14 1.94 5.12 -4.04 -0.02 1.92 16 12 C -0.11 -1.84 2.51 -88.47 -0.22 -2.06 16 13 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 14 C 0.14 2.80 6.56 -2.53 -0.02 2.78 16 15 N -0.61 -15.21 3.39 -170.07 -0.58 -15.78 16 16 C -0.23 -6.32 10.27 -15.06 -0.15 -6.48 16 17 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 18 C -0.01 -0.21 5.48 -17.44 -0.10 -0.30 16 19 N -0.92 -26.87 10.36 55.49 0.57 -26.29 16 20 Si 0.91 22.02 29.56 -169.99 -5.02 17.00 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.18 4.35 4.98 -3.06 -0.02 4.33 16 25 C -0.11 -1.98 3.01 -88.78 -0.27 -2.25 16 26 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 27 C -0.13 -2.07 9.17 37.16 0.34 -1.73 16 28 C 0.09 0.88 11.50 -16.98 -0.20 0.68 16 29 N -0.30 -3.18 12.33 30.86 0.38 -2.80 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.43 8.06 -51.93 -0.42 0.01 16 37 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.40 4.34 7.39 -40.82 -0.30 4.03 16 39 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 40 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 41 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.05 1.31 6.93 -51.93 -0.36 0.95 16 45 H 0.04 1.04 7.61 -51.93 -0.40 0.65 16 46 H 0.04 0.61 8.13 -51.93 -0.42 0.18 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 49 H 0.19 1.45 7.50 -52.48 -0.39 1.06 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -34.61 404.69 -7.80 -42.42 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.15 Total: 0.12 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.26 Total: 4.72 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.18 Total: -57.86 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.29 Total: -12.48 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.61 -7.80 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093164792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.436 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.21 seconds