Wall clock time and date at job start Sat Apr 11 2020 04:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47270 * 2 1 4 4 C 1.53006 * 109.46788 * 240.00349 * 2 1 3 5 5 C 1.50704 * 109.47120 * 65.00125 * 4 2 1 6 6 O 1.21284 * 119.99713 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99766 * 180.02562 * 5 4 2 8 8 C 1.47152 * 120.98570 * 0.02562 * 7 5 4 9 9 C 1.53299 * 108.38652 * 129.44139 * 8 7 5 10 10 O 1.42964 * 109.22101 * 52.30233 * 9 8 7 11 11 C 1.42964 * 114.16742 * 297.41924 * 10 9 8 12 12 H 1.09004 * 109.51066 * 302.66108 * 11 10 9 13 13 C 1.52998 * 109.51163 * 182.50546 * 11 10 9 14 14 N 1.46507 * 109.47006 * 64.99977 * 13 11 10 15 15 C 1.36934 * 119.99741 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99929 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99997 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47063 * 89.99987 * 19 17 15 21 21 H 1.48501 * 109.46897 * 209.99762 * 19 17 15 22 22 H 1.48496 * 109.47207 * 330.00065 * 19 17 15 23 23 C 1.47153 * 120.98115 * 179.71632 * 7 5 4 24 24 C 1.50699 * 109.47393 * 120.00417 * 2 1 3 25 25 C 1.39875 * 126.03728 * 59.97213 * 24 2 1 26 26 N 1.30839 * 108.20184 * 180.02562 * 25 24 2 27 27 N 1.40085 * 108.20364 * 0.02562 * 26 25 24 28 28 C 1.46506 * 126.03688 * 180.02562 * 27 26 25 29 29 C 1.34949 * 107.93019 * 359.97438 * 27 26 25 30 30 H 1.08993 * 109.47205 * 59.99419 * 1 2 3 31 31 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46656 * 299.99587 * 1 2 3 33 33 H 1.09005 * 109.46979 * 184.99862 * 4 2 1 34 34 H 1.08999 * 109.47058 * 304.99976 * 4 2 1 35 35 H 1.09006 * 109.68224 * 249.16777 * 8 7 5 36 36 H 1.08995 * 109.67844 * 9.67781 * 8 7 5 37 37 H 1.08996 * 109.50958 * 172.22804 * 9 8 7 38 38 H 1.08998 * 109.50975 * 292.32655 * 9 8 7 39 39 H 1.08999 * 109.46739 * 184.99780 * 13 11 10 40 40 H 1.08994 * 109.47443 * 304.99791 * 13 11 10 41 41 H 0.96995 * 119.99710 * 0.02562 * 14 13 11 42 42 H 0.96988 * 119.99932 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.67772 * 350.28376 * 23 7 5 44 44 H 1.08995 * 109.68387 * 110.83282 * 23 7 5 45 45 H 1.08003 * 125.89835 * 359.76152 * 25 24 2 46 46 H 1.09006 * 109.46733 * 269.99752 * 28 27 26 47 47 H 1.08996 * 109.47043 * 29.99734 * 28 27 26 48 48 H 1.09000 * 109.46815 * 150.00063 * 28 27 26 49 49 H 1.07997 * 126.13040 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 8 1.0116 1.0876 -2.3632 7 7 1.9843 -0.3917 -3.7002 8 6 2.7474 -1.6393 -3.8629 9 6 2.0243 -2.5179 -4.8902 10 8 1.7899 -1.7575 -6.0779 11 6 0.9388 -0.6245 -5.8891 12 1 -0.0173 -0.9515 -5.4803 13 6 0.7102 0.0724 -7.2319 14 7 -0.0286 -0.8220 -8.1267 15 6 -0.3508 -0.4109 -9.3925 16 1 -0.0600 0.5724 -9.7313 17 6 -1.0514 -1.2580 -10.2401 18 7 -1.4054 -2.4567 -9.8273 19 14 -1.4903 -0.6975 -11.9671 20 1 -0.3982 -1.0713 -12.9014 21 1 -2.7528 -1.3524 -12.3941 22 1 -1.6687 0.7766 -11.9787 23 6 1.6010 0.3478 -4.9133 24 6 2.0324 -0.7105 1.2304 25 6 1.7731 -2.0408 1.5760 26 7 2.3769 -2.2940 2.7087 27 7 3.0400 -1.1308 3.1207 28 6 3.8396 -0.9801 4.3390 29 6 2.8132 -0.1739 2.1965 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 3.1263 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2953 35 1 3.7526 -1.4113 -4.2177 36 1 2.8049 -2.1616 -2.9080 37 1 2.6424 -3.3836 -5.1281 38 1 1.0726 -2.8525 -4.4774 39 1 0.1353 0.9849 -7.0743 40 1 1.6719 0.3216 -7.6802 41 1 -0.2902 -1.7050 -7.8221 42 1 -1.8946 -3.0487 -10.4197 43 1 0.8991 1.1404 -4.6537 44 1 2.4884 0.7797 -5.3758 45 1 1.1740 -2.7374 1.0081 46 1 3.1987 -0.6463 5.1552 47 1 4.2898 -1.9381 4.5990 48 1 4.6250 -0.2436 4.1693 49 1 3.1880 0.8386 2.2231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327003708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:13 Heat of formation + Delta-G solvation = 15.296447 kcal Electronic energy + Delta-G solvation = -28938.658978 eV Core-core repulsion = 24903.275731 eV Total energy + Delta-G solvation = -4035.383247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60277 -40.38935 -38.47929 -35.58218 -35.02162 -34.35479 -33.11689 -32.21402 -30.34525 -29.93892 -28.73260 -27.50772 -26.86763 -25.34156 -23.47516 -23.09144 -22.18489 -21.42759 -20.84607 -20.00748 -18.95116 -17.58714 -17.11177 -16.74602 -16.46022 -15.95022 -15.81919 -15.67128 -15.05683 -14.82177 -14.66050 -14.56536 -14.31363 -13.80729 -13.67167 -13.38170 -13.26965 -13.13099 -13.04304 -12.89110 -12.68023 -12.48961 -12.42156 -12.14060 -11.68272 -11.57081 -11.36792 -11.17270 -10.97665 -10.85982 -10.78105 -10.67187 -10.39994 -10.03506 -9.86290 -9.76406 -9.75079 -9.62494 -8.84144 -8.68923 -8.49803 -6.86498 -5.70392 -2.98980 1.54686 2.16874 2.45603 2.55669 2.85051 3.47996 3.52636 3.54566 3.96900 4.09315 4.37306 4.46520 4.60935 4.64161 4.68228 4.76133 4.80518 4.84905 4.93598 4.94987 5.06342 5.11597 5.18872 5.31374 5.33004 5.35055 5.45177 5.49771 5.53109 5.62497 5.68834 5.73292 5.73602 5.90177 5.96879 5.99105 6.13575 6.24646 6.29784 6.34565 6.41209 6.59024 6.64274 6.72467 7.29643 7.36079 7.48919 7.74439 8.09810 8.47747 9.59412 10.16637 10.52527 11.52462 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.001892 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.693103 B =14797.942406 C =14988.718950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 H 0.082 0.918 4 C -0.130 4.130 5 C 0.516 3.484 6 O -0.537 6.537 7 N -0.615 5.615 8 C 0.072 3.928 9 C 0.045 3.955 10 O -0.358 6.358 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.163 3.837 14 N -0.726 5.726 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.085 3.915 24 C -0.227 4.227 25 C 0.055 3.945 26 N -0.299 5.299 27 N -0.380 5.380 28 C 0.102 3.898 29 C 0.056 3.944 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.181 0.819 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.672 2.360 28.810 31.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 H 0.100 0.900 4 C -0.170 4.170 5 C 0.305 3.695 6 O -0.414 6.414 7 N -0.349 5.349 8 C -0.052 4.052 9 C -0.033 4.033 10 O -0.276 6.276 11 C 0.015 3.985 12 H 0.081 0.919 13 C 0.035 3.965 14 N -0.371 5.371 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.038 4.038 24 C -0.239 4.239 25 C -0.131 4.131 26 N -0.120 5.120 27 N -0.162 5.162 28 C -0.039 4.039 29 C -0.090 4.090 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.198 0.802 46 H 0.092 0.908 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 12.733 2.112 29.605 32.296 hybrid contribution -0.428 0.466 -1.176 1.336 sum 12.305 2.578 28.429 31.084 Atomic orbital electron populations 1.21935 0.94005 1.01636 1.02964 1.19126 0.96118 0.98082 0.88055 0.90010 1.21766 1.02788 1.00251 0.92234 1.20709 0.78924 0.85694 0.84201 1.90667 1.39971 1.24748 1.86031 1.48210 1.55573 1.24985 1.06160 1.22515 0.96035 0.85542 1.01076 1.22912 0.99790 0.94071 0.86532 1.88162 1.68579 1.40400 1.30470 1.22707 0.92498 0.86349 0.96956 0.91920 1.20618 0.95826 0.92900 0.87150 1.42227 1.66126 1.16556 1.12162 1.19233 1.28970 0.99200 0.89615 0.91130 1.24742 1.01380 0.96337 0.98546 1.69674 1.44443 1.07913 1.36039 0.86174 0.77533 0.77657 0.84730 1.21750 1.21820 1.20768 1.22225 1.01369 0.95715 0.84478 1.20084 1.07897 0.95311 1.00580 1.23763 0.99150 0.96178 0.93999 1.77369 1.13505 1.05995 1.15121 1.48453 1.40338 1.08348 1.19051 1.21844 0.94374 1.04071 0.83640 1.22358 1.00299 0.95642 0.90696 0.90405 0.93237 0.92990 0.89009 0.88849 0.90442 0.89029 0.87845 0.92797 0.94655 0.95302 0.77920 0.93581 0.88029 0.90625 0.80187 0.90822 0.89330 0.89504 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.82 37.16 0.33 -1.12 16 2 C 0.01 0.06 2.40 -91.77 -0.22 -0.16 16 3 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 4 C -0.13 -1.10 3.41 -27.88 -0.09 -1.19 16 5 C 0.52 6.23 7.43 -10.99 -0.08 6.15 16 6 O -0.54 -8.17 13.44 5.55 0.07 -8.10 16 7 N -0.61 -7.50 3.03 -172.55 -0.52 -8.02 16 8 C 0.07 0.69 6.54 -3.53 -0.02 0.67 16 9 C 0.05 0.55 6.99 37.31 0.26 0.81 16 10 O -0.36 -6.20 10.33 -35.23 -0.36 -6.57 16 11 C 0.07 1.26 2.80 -26.82 -0.07 1.19 16 12 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 13 C 0.16 3.38 5.93 -4.04 -0.02 3.36 16 14 N -0.73 -19.08 5.55 -59.91 -0.33 -19.42 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 19 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.08 1.21 5.90 -3.77 -0.02 1.19 16 24 C -0.23 -1.89 4.80 -105.05 -0.50 -2.40 16 25 C 0.06 0.49 11.54 -17.36 -0.20 0.29 16 26 N -0.30 -3.05 12.58 30.63 0.39 -2.67 16 27 N -0.38 -3.00 4.01 -68.16 -0.27 -3.27 16 28 C 0.10 0.39 11.47 59.85 0.69 1.07 16 29 C 0.06 0.41 11.38 -17.22 -0.20 0.21 16 30 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 31 H 0.05 0.44 8.02 -51.93 -0.42 0.02 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.66 8.02 -51.93 -0.42 0.24 16 34 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.61 6.05 -51.93 -0.31 0.30 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.39 10.80 7.67 -40.82 -0.31 10.49 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 44 H 0.08 1.04 8.13 -51.93 -0.42 0.61 16 45 H 0.18 1.24 8.06 -52.48 -0.42 0.81 16 46 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 49 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -36.55 397.94 -7.73 -44.29 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.99 Total: 5.53 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.41 Total: 2.53 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.02 Total: -61.45 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.29 Total: -14.66 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.55 -7.73 -44.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327003708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.584 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds