Wall clock time and date at job start Sat Apr 11 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47270 * 2 1 4 4 C 1.53006 * 109.46788 * 240.00349 * 2 1 3 5 5 C 1.50704 * 109.47120 * 65.00125 * 4 2 1 6 6 O 1.21284 * 119.99713 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99766 * 180.02562 * 5 4 2 8 8 C 1.47152 * 120.98570 * 0.02562 * 7 5 4 9 9 C 1.53299 * 108.38652 * 129.44139 * 8 7 5 10 10 O 1.42964 * 109.22101 * 52.30233 * 9 8 7 11 11 C 1.42964 * 114.16742 * 297.41924 * 10 9 8 12 12 H 1.09004 * 109.51066 * 302.66108 * 11 10 9 13 13 C 1.52998 * 109.51163 * 182.50546 * 11 10 9 14 14 N 1.46507 * 109.47006 * 64.99977 * 13 11 10 15 15 C 1.36934 * 119.99741 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99929 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99997 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47063 * 89.99987 * 19 17 15 21 21 H 1.48501 * 109.46897 * 209.99762 * 19 17 15 22 22 H 1.48496 * 109.47207 * 330.00065 * 19 17 15 23 23 C 1.47153 * 120.98115 * 179.71632 * 7 5 4 24 24 C 1.50699 * 109.47393 * 120.00417 * 2 1 3 25 25 C 1.39875 * 126.03728 * 59.97213 * 24 2 1 26 26 N 1.30839 * 108.20184 * 180.02562 * 25 24 2 27 27 N 1.40085 * 108.20364 * 0.02562 * 26 25 24 28 28 C 1.46506 * 126.03688 * 180.02562 * 27 26 25 29 29 C 1.34949 * 107.93019 * 359.97438 * 27 26 25 30 30 H 1.08993 * 109.47205 * 59.99419 * 1 2 3 31 31 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46656 * 299.99587 * 1 2 3 33 33 H 1.09005 * 109.46979 * 184.99862 * 4 2 1 34 34 H 1.08999 * 109.47058 * 304.99976 * 4 2 1 35 35 H 1.09006 * 109.68224 * 249.16777 * 8 7 5 36 36 H 1.08995 * 109.67844 * 9.67781 * 8 7 5 37 37 H 1.08996 * 109.50958 * 172.22804 * 9 8 7 38 38 H 1.08998 * 109.50975 * 292.32655 * 9 8 7 39 39 H 1.08999 * 109.46739 * 184.99780 * 13 11 10 40 40 H 1.08994 * 109.47443 * 304.99791 * 13 11 10 41 41 H 0.96995 * 119.99710 * 0.02562 * 14 13 11 42 42 H 0.96988 * 119.99932 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.67772 * 350.28376 * 23 7 5 44 44 H 1.08995 * 109.68387 * 110.83282 * 23 7 5 45 45 H 1.08003 * 125.89835 * 359.76152 * 25 24 2 46 46 H 1.09006 * 109.46733 * 269.99752 * 28 27 26 47 47 H 1.08996 * 109.47043 * 29.99734 * 28 27 26 48 48 H 1.09000 * 109.46815 * 150.00063 * 28 27 26 49 49 H 1.07997 * 126.13040 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 8 1.0116 1.0876 -2.3632 7 7 1.9843 -0.3917 -3.7002 8 6 2.7474 -1.6393 -3.8629 9 6 2.0243 -2.5179 -4.8902 10 8 1.7899 -1.7575 -6.0779 11 6 0.9388 -0.6245 -5.8891 12 1 -0.0173 -0.9515 -5.4803 13 6 0.7102 0.0724 -7.2319 14 7 -0.0286 -0.8220 -8.1267 15 6 -0.3508 -0.4109 -9.3925 16 1 -0.0600 0.5724 -9.7313 17 6 -1.0514 -1.2580 -10.2401 18 7 -1.4054 -2.4567 -9.8273 19 14 -1.4903 -0.6975 -11.9671 20 1 -0.3982 -1.0713 -12.9014 21 1 -2.7528 -1.3524 -12.3941 22 1 -1.6687 0.7766 -11.9787 23 6 1.6010 0.3478 -4.9133 24 6 2.0324 -0.7105 1.2304 25 6 1.7731 -2.0408 1.5760 26 7 2.3769 -2.2940 2.7087 27 7 3.0400 -1.1308 3.1207 28 6 3.8396 -0.9801 4.3390 29 6 2.8132 -0.1739 2.1965 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 3.1263 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2953 35 1 3.7526 -1.4113 -4.2177 36 1 2.8049 -2.1616 -2.9080 37 1 2.6424 -3.3836 -5.1281 38 1 1.0726 -2.8525 -4.4774 39 1 0.1353 0.9849 -7.0743 40 1 1.6719 0.3216 -7.6802 41 1 -0.2902 -1.7050 -7.8221 42 1 -1.8946 -3.0487 -10.4197 43 1 0.8991 1.1404 -4.6537 44 1 2.4884 0.7797 -5.3758 45 1 1.1740 -2.7374 1.0081 46 1 3.1987 -0.6463 5.1552 47 1 4.2898 -1.9381 4.5990 48 1 4.6250 -0.2436 4.1693 49 1 3.1880 0.8386 2.2231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327003708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:12 Heat of formation + Delta-G solvation = -10.304871 kcal Electronic energy + Delta-G solvation = -28939.769134 eV Core-core repulsion = 24903.275731 eV Total energy + Delta-G solvation = -4036.493403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18453 -41.38551 -39.61044 -36.66064 -36.28597 -35.66727 -33.94810 -33.58840 -31.95140 -30.63825 -29.61439 -28.71840 -27.34221 -26.80923 -24.92539 -24.07889 -23.38354 -22.25661 -21.93013 -20.70095 -19.82532 -19.22385 -18.36704 -17.69575 -17.37055 -17.03777 -16.76757 -16.51662 -16.24516 -15.98587 -15.87878 -15.48923 -15.23289 -15.01055 -14.86682 -14.54502 -14.25634 -14.16957 -13.93795 -13.73564 -13.63571 -13.41178 -13.31586 -13.17490 -12.95710 -12.76948 -12.60612 -12.39037 -12.22946 -12.05360 -12.03823 -11.90036 -11.84357 -11.55412 -11.31842 -11.09958 -10.94731 -10.67660 -10.32681 -9.55592 -9.26399 -9.00355 -7.93414 -5.23023 1.00170 1.48283 1.50978 1.59290 1.63159 1.73160 1.80448 1.97480 2.57348 2.78952 3.40448 3.46742 3.61218 3.72431 3.92824 3.97024 4.02548 4.10329 4.11973 4.17767 4.24791 4.34900 4.38420 4.44406 4.46683 4.47807 4.57071 4.67882 4.71203 4.72736 4.75371 4.78223 4.80178 4.89051 4.91378 4.97205 5.06718 5.10845 5.23142 5.34715 5.44415 5.49138 5.52061 5.76623 6.18366 6.25910 6.29007 6.38763 6.78965 7.16785 7.34017 8.07845 8.32762 9.30305 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.001892 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.693103 B =14797.942406 C =14988.718950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 H 0.074 0.926 4 C -0.122 4.122 5 C 0.513 3.487 6 O -0.573 6.573 7 N -0.618 5.618 8 C 0.077 3.923 9 C 0.035 3.965 10 O -0.390 6.390 11 C 0.088 3.912 12 H 0.046 0.954 13 C 0.160 3.840 14 N -0.740 5.740 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.978 3.022 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.095 3.905 24 C -0.239 4.239 25 C 0.049 3.951 26 N -0.337 5.337 27 N -0.383 5.383 28 C 0.093 3.907 29 C 0.060 3.940 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.030 0.970 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.193 0.807 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.114 0.886 49 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.477 2.717 30.105 33.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.005 4.005 3 H 0.093 0.907 4 C -0.161 4.161 5 C 0.303 3.697 6 O -0.453 6.453 7 N -0.351 5.351 8 C -0.045 4.045 9 C -0.041 4.041 10 O -0.309 6.309 11 C 0.029 3.971 12 H 0.064 0.936 13 C 0.033 3.967 14 N -0.383 5.383 15 C -0.380 4.380 16 H 0.096 0.904 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.806 3.194 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.193 1.193 23 C -0.028 4.028 24 C -0.250 4.250 25 C -0.136 4.136 26 N -0.159 5.159 27 N -0.165 5.165 28 C -0.047 4.047 29 C -0.087 4.087 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.210 0.790 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.132 0.868 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 14.580 2.481 30.940 34.293 hybrid contribution -0.944 0.369 -1.472 1.787 sum 13.636 2.850 29.468 32.595 Atomic orbital electron populations 1.21877 0.95185 1.01634 1.01523 1.18969 0.95025 0.97860 0.88600 0.90741 1.21798 1.04215 1.00226 0.89867 1.21392 0.77964 0.85425 0.84881 1.90660 1.41536 1.26571 1.86523 1.48315 1.55706 1.25643 1.05465 1.22664 0.95559 0.84139 1.02159 1.23239 1.00528 0.94723 0.85660 1.88095 1.68377 1.40761 1.33620 1.22351 0.92357 0.87036 0.95313 0.93646 1.20768 0.95029 0.92698 0.88241 1.42418 1.66726 1.16758 1.12386 1.19680 1.28227 0.99428 0.90664 0.90385 1.25625 1.01955 0.96579 1.02734 1.69841 1.45635 1.09152 1.37381 0.85078 0.76851 0.77794 0.79640 1.21318 1.22111 1.19295 1.21917 1.01155 0.94779 0.84990 1.20012 1.08952 0.95218 1.00838 1.24025 0.99004 0.96716 0.93859 1.77314 1.14896 1.07704 1.16031 1.48777 1.40035 1.07792 1.19882 1.22156 0.94872 1.05006 0.82645 1.22835 0.99322 0.96543 0.89957 0.93064 0.92516 0.93102 0.86723 0.87008 0.89204 0.85268 0.85652 0.93094 0.93969 0.95191 0.79378 0.94011 0.89104 0.89855 0.79035 0.89951 0.89332 0.86801 0.78289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.82 71.98 0.64 -2.12 16 2 C 0.02 0.25 2.40 -11.54 -0.03 0.22 16 3 H 0.07 1.29 7.92 -2.39 -0.02 1.28 16 4 C -0.12 -1.73 3.41 29.85 0.10 -1.62 16 5 C 0.51 11.63 7.43 87.66 0.65 12.28 16 6 O -0.57 -17.36 13.44 -3.04 -0.04 -17.40 16 7 N -0.62 -14.06 3.03 -818.22 -2.48 -16.53 16 8 C 0.08 1.26 6.54 86.36 0.57 1.83 16 9 C 0.04 0.80 6.99 72.08 0.50 1.31 16 10 O -0.39 -13.41 10.33 -148.98 -1.54 -14.95 16 11 C 0.09 3.06 2.80 30.54 0.09 3.15 16 12 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 13 C 0.16 6.71 5.93 86.38 0.51 7.22 16 14 N -0.74 -39.72 5.55 -343.45 -1.91 -41.62 16 15 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 16 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 17 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 18 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 19 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 C 0.10 2.69 5.90 86.20 0.51 3.20 16 24 C -0.24 -3.47 4.80 -20.14 -0.10 -3.57 16 25 C 0.05 0.79 11.54 85.24 0.98 1.78 16 26 N -0.34 -6.42 12.58 -57.02 -0.72 -7.14 16 27 N -0.38 -5.25 4.01 -369.55 -1.48 -6.73 16 28 C 0.09 0.50 11.47 127.77 1.47 1.96 16 29 C 0.06 0.73 11.38 83.54 0.95 1.68 16 30 H 0.05 1.26 5.95 -2.39 -0.01 1.25 16 31 H 0.06 0.96 8.02 -2.39 -0.02 0.94 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.17 8.02 -2.38 -0.02 1.16 16 34 H 0.11 1.22 7.66 -2.39 -0.02 1.20 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.13 1.17 6.05 -2.39 -0.01 1.15 16 37 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.37 21.59 7.67 -92.71 -0.71 20.88 16 42 H 0.25 15.24 8.31 -92.72 -0.77 14.47 16 43 H 0.09 2.76 7.08 -2.38 -0.02 2.74 16 44 H 0.08 2.21 8.13 -2.39 -0.02 2.19 16 45 H 0.19 2.31 8.06 -2.91 -0.02 2.28 16 46 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 47 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 49 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -80.74 397.94 2.53 -78.21 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.23 Total: 28.07 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 8.15 Total: 9.69 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -6.30 Total: -132.80 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.58 Total: -32.35 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -80.74 2.53 -78.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327003708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.908 kcal (2) G-P(sol) polarization free energy of solvation -80.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds