Wall clock time and date at job start Sat Apr 11 2020 04:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47137 * 2 1 4 4 C 1.52995 * 109.47743 * 239.99566 * 2 1 3 5 5 N 1.46492 * 109.47460 * 185.00484 * 4 2 1 6 6 C 1.46504 * 119.99614 * 269.99857 * 5 4 2 7 7 C 1.36933 * 120.00450 * 89.99577 * 5 4 2 8 8 H 1.07997 * 119.99826 * 22.03111 * 7 5 4 9 9 C 1.38818 * 120.00282 * 202.02802 * 7 5 4 10 10 N 1.31614 * 119.99628 * 11.44638 * 9 7 5 11 11 Si 1.86797 * 120.00117 * 191.44295 * 9 7 5 12 12 H 1.48504 * 109.47080 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46998 * 119.99782 * 11 9 7 14 14 H 1.48497 * 109.47108 * 240.00265 * 11 9 7 15 15 N 1.46502 * 109.46917 * 119.99363 * 2 1 3 16 16 C 1.34776 * 120.00223 * 275.00385 * 15 2 1 17 17 O 1.21283 * 120.00033 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00372 * 179.97438 * 16 15 2 19 19 C 1.52999 * 109.47334 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.46864 * 180.02562 * 19 18 16 21 21 C 1.50709 * 109.46519 * 180.02562 * 20 19 18 22 22 N 1.31129 * 126.55395 * 90.00266 * 21 20 19 23 23 C 1.34488 * 105.61383 * 179.97438 * 22 21 20 24 24 C 1.50709 * 126.28466 * 179.73273 * 23 22 21 25 25 C 1.52998 * 117.49594 * 188.62357 * 24 23 22 26 26 C 1.52997 * 60.00196 * 252.51216 * 25 24 23 27 27 N 1.29940 * 107.42722 * 0.02562 * 23 22 21 28 28 O 1.21301 * 110.25456 * 359.97438 * 27 23 22 29 29 H 1.08997 * 109.48051 * 300.00682 * 1 2 3 30 30 H 1.09005 * 109.47119 * 60.00670 * 1 2 3 31 31 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46571 * 305.00342 * 4 2 1 33 33 H 1.09003 * 109.47105 * 64.99738 * 4 2 1 34 34 H 1.08997 * 109.46959 * 94.04163 * 6 5 4 35 35 H 1.09000 * 109.47034 * 214.03945 * 6 5 4 36 36 H 1.09002 * 109.47439 * 334.03856 * 6 5 4 37 37 H 0.97001 * 119.99916 * 179.97438 * 10 9 7 38 38 H 0.96997 * 119.99841 * 94.99717 * 15 2 1 39 39 H 1.09003 * 109.46659 * 59.99710 * 18 16 15 40 40 H 1.08999 * 109.46810 * 300.00297 * 18 16 15 41 41 H 1.08994 * 109.46934 * 60.00027 * 19 18 16 42 42 H 1.08993 * 109.46992 * 300.00066 * 19 18 16 43 43 H 1.08994 * 109.47475 * 60.00172 * 20 19 18 44 44 H 1.09000 * 109.47147 * 299.99309 * 20 19 18 45 45 H 1.08999 * 115.54674 * 334.33413 * 24 23 22 46 46 H 1.08998 * 117.50238 * 0.02562 * 25 24 23 47 47 H 1.09006 * 117.49524 * 145.01970 * 25 24 23 48 48 H 1.09003 * 117.50156 * 252.51719 * 26 25 24 49 49 H 1.09003 * 117.51611 * 107.48193 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1903 6 6 4.3344 0.2340 -1.7610 7 6 4.0850 -1.9158 -0.6019 8 1 3.5321 -2.8384 -0.5037 9 6 5.3885 -1.8345 -0.1316 10 7 5.9842 -0.6642 -0.0429 11 14 6.2972 -3.3858 0.3752 12 1 5.4132 -4.5632 0.1807 13 1 7.5166 -3.5399 -0.4582 14 1 6.6842 -3.2879 1.8055 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0181 2.3572 17 8 1.8589 1.1588 2.4115 18 6 2.6486 -0.7285 3.5879 19 6 2.6995 0.2546 4.7592 20 6 3.2095 -0.4666 6.0085 21 6 3.2590 0.5017 7.1623 22 7 2.2954 0.7483 8.0168 23 6 2.7882 1.6713 8.8617 24 6 2.0618 2.2917 10.0273 25 6 2.7374 3.4674 10.7359 26 6 2.6669 2.1005 11.4195 27 7 4.0036 1.9345 8.4847 28 8 4.2935 1.2730 7.5101 29 1 -0.3635 0.5139 0.8898 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7199 -1.2949 33 1 1.7518 -0.1584 -2.1369 34 1 4.5995 0.9473 -0.9807 35 1 5.2420 -0.2025 -2.1779 36 1 3.7824 0.7461 -2.5492 37 1 6.8949 -0.6072 0.2860 38 1 2.2489 -1.6316 1.1528 39 1 3.6478 -1.1210 3.3988 40 1 1.9757 -1.5503 3.8327 41 1 1.7002 0.6467 4.9480 42 1 3.3721 1.0766 4.5146 43 1 4.2089 -0.8584 5.8194 44 1 2.5371 -1.2888 6.2533 45 1 0.9748 2.3082 9.9488 46 1 3.7071 3.7925 10.3588 47 1 2.0948 4.2579 11.1237 48 1 1.9778 1.9915 12.2571 49 1 3.5902 1.5256 11.4924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483395413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:00 Heat of formation + Delta-G solvation = 65.544837 kcal Electronic energy + Delta-G solvation = -28901.703244 eV Core-core repulsion = 24868.498931 eV Total energy + Delta-G solvation = -4033.204313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.68360 -39.20069 -37.98684 -36.53032 -35.85872 -34.72739 -33.91939 -32.06442 -31.29806 -30.11170 -27.97530 -26.17939 -25.62544 -25.48854 -23.89851 -22.81638 -22.56648 -21.60763 -20.44545 -20.11785 -19.56432 -18.11723 -17.83799 -16.92807 -16.37164 -15.93579 -15.71619 -15.46194 -15.20850 -14.85134 -14.55977 -13.96227 -13.73570 -13.37349 -13.18172 -13.00114 -12.85560 -12.73478 -12.39234 -12.30426 -12.12890 -12.02375 -11.93319 -11.67009 -11.51526 -11.39849 -11.27755 -11.19871 -10.93375 -10.89849 -10.83049 -10.72476 -10.69919 -10.40560 -10.24916 -10.05336 -9.86087 -9.81888 -9.15523 -8.61199 -8.22749 -6.81195 -5.77138 -3.23360 1.02097 2.00078 2.70250 3.27451 3.29107 3.34973 3.38106 3.39869 3.42966 3.88218 3.96849 4.38677 4.42104 4.45228 4.54741 4.85332 4.91961 4.99980 5.19893 5.23116 5.32046 5.34170 5.45440 5.46306 5.49660 5.57716 5.61074 5.66083 5.69364 5.69933 5.82156 5.88493 5.95822 6.00536 6.17026 6.18667 6.25945 6.32334 6.45766 6.53519 6.74392 6.89900 7.33031 7.37363 7.67565 7.77696 8.05991 8.32065 8.35274 8.99586 9.17037 9.81255 10.31632 11.26856 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.002432 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.656273 B =11510.027622 C =12742.318511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.005 3.995 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.688 5.688 16 C 0.517 3.483 17 O -0.565 6.565 18 C -0.139 4.139 19 C -0.097 4.097 20 C -0.031 4.031 21 C 0.197 3.803 22 N -0.482 5.482 23 C 0.198 3.802 24 C -0.078 4.078 25 C -0.159 4.159 26 C -0.157 4.157 27 N -0.387 5.387 28 O 0.078 5.922 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.045 0.955 36 H -0.005 1.005 37 H 0.252 0.748 38 H 0.404 0.596 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.135 0.865 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 0.829 15.166 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.543 5.543 11 Si 0.727 3.273 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 N -0.337 5.337 16 C 0.303 3.697 17 O -0.445 6.445 18 C -0.179 4.179 19 C -0.136 4.136 20 C -0.070 4.070 21 C -0.023 4.023 22 N -0.215 5.215 23 C -0.074 4.074 24 C -0.098 4.098 25 C -0.197 4.197 26 C -0.196 4.196 27 N -0.095 5.095 28 O 0.021 5.979 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.062 0.938 38 H 0.239 0.761 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.153 0.847 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.326 2.220 15.781 17.980 hybrid contribution 0.853 -1.313 0.136 1.572 sum -7.472 0.906 15.917 17.607 Atomic orbital electron populations 1.22153 0.97032 1.01155 1.01468 1.21784 0.91671 0.98369 0.87167 0.90688 1.21180 0.85949 0.97852 0.93662 1.43897 0.98908 1.22650 1.66632 1.20792 0.92978 0.90462 0.93806 1.19119 0.96970 0.89492 1.32862 0.91540 1.25006 0.98613 0.96149 0.99613 1.70088 1.13127 1.21548 1.49567 0.86317 0.80109 0.82926 0.77957 1.20371 1.21731 1.21680 1.45713 1.65072 1.14319 1.08604 1.20296 0.77369 0.87138 0.84877 1.90632 1.51923 1.16242 1.85682 1.21578 1.04120 0.99082 0.93159 1.21282 1.03180 0.98336 0.90847 1.20415 1.05525 0.93694 0.87398 1.28893 0.81844 0.94259 0.97342 1.71844 1.28301 1.15823 1.05528 1.24765 0.89022 0.95145 0.98490 1.20057 0.98618 1.03263 0.87826 1.23082 1.02959 0.91523 1.02113 1.23072 1.02964 0.99936 0.93588 1.74565 1.17329 1.15884 1.01735 1.85319 1.38977 1.40196 1.33457 0.93014 0.92396 0.93071 0.93387 0.93100 0.95439 0.93656 0.98646 0.93796 0.76086 0.88020 0.89160 0.90475 0.90277 0.87511 0.87023 0.84676 0.87775 0.87415 0.87375 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.01 16 2 C 0.12 2.15 2.88 -67.93 -0.20 1.95 16 3 H 0.07 1.61 7.58 -51.93 -0.39 1.21 16 4 C 0.14 2.65 5.36 -4.05 -0.02 2.63 16 5 N -0.60 -13.83 2.82 -181.12 -0.51 -14.34 16 6 C 0.16 3.94 9.01 59.85 0.54 4.48 16 7 C -0.25 -6.21 8.02 -15.06 -0.12 -6.33 16 8 H 0.07 1.56 7.84 -52.49 -0.41 1.15 16 9 C 0.01 0.13 5.13 -17.43 -0.09 0.04 16 10 N -0.90 -24.62 10.57 55.49 0.59 -24.04 16 11 Si 0.90 20.05 29.57 -169.99 -5.03 15.02 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 15 N -0.69 -12.46 4.49 -53.81 -0.24 -12.70 16 16 C 0.52 9.47 7.79 -10.99 -0.09 9.39 16 17 O -0.56 -12.25 15.64 5.55 0.09 -12.17 16 18 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 19 C -0.10 -1.26 4.49 -26.73 -0.12 -1.38 16 20 C -0.03 -0.32 5.84 -27.88 -0.16 -0.48 16 21 C 0.20 2.51 7.77 -13.06 -0.10 2.40 16 22 N -0.48 -6.63 11.55 -9.87 -0.11 -6.75 16 23 C 0.20 2.62 7.74 -156.38 -1.21 1.41 16 24 C -0.08 -0.76 6.33 -91.77 -0.58 -1.34 16 25 C -0.16 -1.27 10.14 -26.73 -0.27 -1.54 16 26 C -0.16 -1.20 10.23 -26.73 -0.27 -1.47 16 27 N -0.39 -5.51 11.76 30.90 0.36 -5.15 16 28 O 0.08 1.10 11.31 18.10 0.20 1.30 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 34 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 35 H 0.04 1.17 7.16 -51.93 -0.37 0.80 16 36 H 0.00 -0.11 7.85 -51.93 -0.41 -0.51 16 37 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.40 7.06 7.40 -40.82 -0.30 6.76 16 39 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 43 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.10 0.96 7.91 -51.93 -0.41 0.55 16 47 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 408.09 15.07 6.15 6.15 Total: -1.00 -31.83 408.09 -9.14 -40.96 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.14 Total: 6.00 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.50 Total: 5.70 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.08 Total: -62.97 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.29 Total: -10.87 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.83 -9.14 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483395413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.509 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds