Wall clock time and date at job start Sat Apr 11 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35350 * 117.00324 * 2 1 4 4 C 1.38992 * 126.40477 * 92.01621 * 3 2 1 5 5 C 1.46923 * 126.49747 * 359.94871 * 4 3 2 6 6 O 1.21669 * 120.00113 * 29.35765 * 5 4 3 7 7 N 1.34769 * 119.99916 * 209.36449 * 5 4 3 8 8 C 1.46931 * 120.63303 * 357.11978 * 7 5 4 9 9 C 1.53187 * 108.89371 * 126.34689 * 8 7 5 10 10 C 1.53351 * 109.15155 * 54.57699 * 9 8 7 11 11 C 1.53042 * 109.60765 * 298.71302 * 10 9 8 12 12 H 1.09000 * 109.52178 * 301.40850 * 11 10 9 13 13 C 1.52997 * 109.49642 * 181.32624 * 11 10 9 14 14 H 1.09001 * 109.47165 * 300.16474 * 13 11 10 15 15 C 1.52999 * 109.47072 * 60.16028 * 13 11 10 16 16 N 1.46499 * 109.46997 * 180.16369 * 13 11 10 17 17 C 1.36941 * 120.00090 * 155.00249 * 16 13 11 18 18 H 1.07997 * 119.99551 * 359.97438 * 17 16 13 19 19 C 1.38809 * 119.99906 * 179.97438 * 17 16 13 20 20 N 1.31614 * 120.00200 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99671 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47306 * 90.00287 * 21 19 17 23 23 H 1.48503 * 109.47064 * 210.00055 * 21 19 17 24 24 H 1.48496 * 109.47494 * 329.99769 * 21 19 17 25 25 C 1.46929 * 120.63126 * 177.14597 * 7 5 4 26 26 C 1.41459 * 107.00779 * 180.20415 * 4 3 2 27 27 N 1.30321 * 108.13391 * 359.62025 * 26 4 3 28 28 N 1.34661 * 126.40481 * 271.99696 * 3 2 1 29 29 C 1.46500 * 125.74521 * 0.04926 * 28 3 2 30 30 H 1.08999 * 109.47473 * 184.97693 * 1 2 3 31 31 H 1.09002 * 109.47191 * 304.98749 * 1 2 3 32 32 H 1.09009 * 109.47172 * 64.97883 * 1 2 3 33 33 H 1.09006 * 109.58596 * 246.20616 * 8 7 5 34 34 H 1.09002 * 109.58112 * 6.48489 * 8 7 5 35 35 H 1.09000 * 109.49485 * 174.66221 * 9 8 7 36 36 H 1.08999 * 109.49443 * 294.75024 * 9 8 7 37 37 H 1.09001 * 109.41466 * 178.67580 * 10 9 8 38 38 H 1.08999 * 109.41752 * 58.75257 * 10 9 8 39 39 H 1.09003 * 109.47025 * 180.02562 * 15 13 11 40 40 H 1.09000 * 109.47626 * 300.00142 * 15 13 11 41 41 H 1.08999 * 109.47030 * 60.00664 * 15 13 11 42 42 H 0.97001 * 119.99915 * 334.99724 * 16 13 11 43 43 H 0.97007 * 119.99990 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58331 * 353.37180 * 25 7 5 45 45 H 1.08997 * 109.58784 * 113.79560 * 25 7 5 46 46 H 1.07997 * 125.93613 * 179.73885 * 26 4 3 47 47 H 1.09007 * 109.46741 * 84.93652 * 29 28 3 48 48 H 1.08996 * 109.47347 * 204.93546 * 29 28 3 49 49 H 1.09006 * 109.47030 * 324.94094 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4531 1.9230 1.1180 5 6 2.3001 1.5162 2.5214 6 8 2.2891 0.3355 2.8149 7 7 2.1717 2.4509 3.4838 8 6 2.2460 3.8807 3.1534 9 6 0.9960 4.5807 3.6959 10 6 0.8643 4.2849 5.1948 11 6 0.7085 2.7776 5.4091 12 1 -0.1701 2.4221 4.8708 13 6 0.5442 2.4884 6.9025 14 1 1.4224 2.8453 7.4405 15 6 -0.7014 3.2059 7.4268 16 7 0.3990 1.0451 7.1073 17 6 0.7434 0.4860 8.3090 18 1 1.1225 1.1091 9.1055 19 6 0.6054 -0.8815 8.5032 20 7 0.1430 -1.6406 7.5326 21 14 1.0759 -1.6442 10.1421 22 1 -0.1043 -1.6483 11.0433 23 1 1.5376 -3.0388 9.9247 24 1 2.1687 -0.8520 10.7613 25 6 1.9555 2.0596 4.8834 26 6 3.0399 3.1216 0.6486 27 7 2.9910 3.1143 -0.6536 28 7 2.3727 1.9352 -1.0832 29 6 2.1246 1.5576 -2.4767 30 1 -0.3634 -1.0238 0.0892 31 1 -0.3634 0.5893 0.8420 32 1 -0.3634 0.4347 -0.9313 33 1 3.1354 4.3155 3.6098 34 1 2.2933 4.0037 2.0714 35 1 1.0848 5.6559 3.5401 36 1 0.1150 4.2085 3.1731 37 1 -0.0110 4.8003 5.5902 38 1 1.7570 4.6351 5.7131 39 1 -0.8182 3.0002 8.4908 40 1 -0.5934 4.2798 7.2744 41 1 -1.5796 2.8490 6.8889 42 1 0.0588 0.4855 6.3917 43 1 0.0468 -2.5964 7.6682 44 1 1.8084 0.9812 4.9427 45 1 2.8210 2.3459 5.4808 46 1 3.4578 3.9055 1.2627 47 1 1.1135 1.8518 -2.7583 48 1 2.8430 2.0617 -3.1232 49 1 2.2326 0.4783 -2.5855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715325184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:43 Heat of formation + Delta-G solvation = 40.333903 kcal Electronic energy + Delta-G solvation = -30499.207543 eV Core-core repulsion = 26464.910002 eV Total energy + Delta-G solvation = -4034.297541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84041 -39.65197 -38.34390 -37.46429 -35.37746 -33.76865 -32.74229 -31.64906 -30.35553 -29.74709 -28.34644 -27.46573 -27.00759 -25.44986 -23.96180 -23.03011 -22.33631 -21.36914 -20.81468 -19.59196 -19.29773 -17.73655 -17.21497 -16.87862 -16.65930 -16.02131 -15.39045 -14.98334 -14.88802 -14.79377 -14.74963 -14.42246 -13.88346 -13.73600 -13.60992 -13.47520 -13.07035 -13.05302 -12.91627 -12.60910 -12.53009 -12.22961 -12.13286 -11.87702 -11.55368 -11.24020 -10.97625 -10.88157 -10.80467 -10.64379 -10.52143 -10.41735 -10.19779 -10.07823 -9.77809 -9.65647 -9.51977 -9.41782 -8.82735 -8.79468 -8.25171 -6.85336 -5.65313 -2.94311 1.09588 1.86333 1.97866 3.17364 3.26966 3.50141 3.54097 3.55022 3.57261 4.14474 4.65461 4.66938 4.72926 4.80301 4.81858 4.87965 4.99667 5.02278 5.03219 5.06513 5.16492 5.28609 5.36036 5.40853 5.45907 5.58440 5.66663 5.78790 5.82684 5.88947 5.89675 6.00976 6.07887 6.12960 6.21508 6.27878 6.29493 6.50732 6.57550 6.62492 6.81538 6.89864 6.99119 7.11904 7.16891 7.24006 7.73387 7.79317 8.52287 8.56158 9.63416 10.21669 10.56017 11.56911 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.003238 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.047194 B = 8645.454505 C = 9890.498567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.315 3.685 4 C -0.285 4.285 5 C 0.587 3.413 6 O -0.523 6.523 7 N -0.606 5.606 8 C 0.082 3.918 9 C -0.132 4.132 10 C -0.115 4.115 11 C -0.102 4.102 12 H 0.068 0.932 13 C 0.180 3.820 14 H 0.047 0.953 15 C -0.164 4.164 16 N -0.724 5.724 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.929 5.929 21 Si 0.903 3.097 22 H -0.292 1.292 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.125 3.875 26 C 0.077 3.923 27 N -0.280 5.280 28 N -0.371 5.371 29 C 0.094 3.906 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.044 0.956 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.207 0.793 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 14.035 -20.333 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.142 3.858 4 C -0.301 4.301 5 C 0.375 3.625 6 O -0.399 6.399 7 N -0.339 5.339 8 C -0.041 4.041 9 C -0.171 4.171 10 C -0.153 4.153 11 C -0.122 4.122 12 H 0.086 0.914 13 C 0.070 3.930 14 H 0.065 0.935 15 C -0.224 4.224 16 N -0.365 5.365 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.577 5.577 21 Si 0.735 3.265 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.208 1.208 25 C 0.004 3.996 26 C -0.108 4.108 27 N -0.103 5.103 28 N -0.161 5.161 29 C -0.047 4.047 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.125 0.875 45 H 0.082 0.918 46 H 0.223 0.777 47 H 0.095 0.905 48 H 0.115 0.885 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.168 13.639 -21.182 25.286 hybrid contribution -0.355 -0.922 1.336 1.662 sum 1.814 12.717 -19.846 23.641 Atomic orbital electron populations 1.23188 0.76634 1.04992 1.00951 1.86063 1.21313 1.20205 1.92840 1.19281 0.95548 0.84738 0.86224 1.20096 1.18050 0.98300 0.93644 1.17029 0.76881 0.85373 0.83264 1.90890 1.49844 1.16745 1.82416 1.47930 1.72034 1.05584 1.08339 1.22393 0.98515 0.81255 1.01917 1.21961 0.98097 0.99804 0.97215 1.21680 1.02164 0.96427 0.94985 1.21751 0.98021 0.94296 0.98151 0.91370 1.20171 0.95455 0.86473 0.90935 0.93528 1.22481 1.00250 0.98052 1.01652 1.42449 1.77984 1.01050 1.15046 1.19186 1.35629 0.90888 0.91165 0.91328 1.24724 1.02229 0.96345 0.97570 1.69667 1.51824 1.04712 1.31484 0.86247 0.77912 0.78685 0.83676 1.21933 1.21863 1.20842 1.21677 0.96891 1.02705 0.78328 1.24254 0.98169 0.96727 0.91691 1.77204 1.19051 1.00753 1.13316 1.48909 1.45986 1.14646 1.06594 1.21980 1.03032 1.02265 0.77394 0.87213 0.92235 0.93452 0.91320 0.88460 0.91084 0.91821 0.91379 0.91863 0.92942 0.94313 0.93694 0.78200 0.93590 0.87509 0.91820 0.77719 0.90471 0.88451 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.13 101.05 1.12 1.50 16 2 O -0.30 -4.08 10.20 -17.74 -0.18 -4.27 16 3 C 0.31 4.27 6.98 -16.03 -0.11 4.16 16 4 C -0.29 -4.08 5.74 -104.88 -0.60 -4.68 16 5 C 0.59 10.24 7.63 -12.75 -0.10 10.14 16 6 O -0.52 -11.67 16.21 5.22 0.08 -11.59 16 7 N -0.61 -9.20 2.97 -174.21 -0.52 -9.72 16 8 C 0.08 0.87 5.53 -3.71 -0.02 0.85 16 9 C -0.13 -1.35 6.11 -26.45 -0.16 -1.51 16 10 C -0.11 -1.41 4.86 -26.53 -0.13 -1.54 16 11 C -0.10 -1.67 1.98 -90.50 -0.18 -1.85 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C 0.18 3.52 2.47 -67.93 -0.17 3.35 16 14 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 15 C -0.16 -2.93 9.14 37.16 0.34 -2.59 16 16 N -0.72 -18.20 4.52 -53.43 -0.24 -18.44 16 17 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 21 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.13 2.23 5.46 -3.71 -0.02 2.21 16 26 C 0.08 0.86 9.71 -16.97 -0.16 0.69 16 27 N -0.28 -3.22 12.47 30.88 0.39 -2.83 16 28 N -0.37 -4.09 3.99 -67.67 -0.27 -4.36 16 29 C 0.09 0.60 11.38 59.85 0.68 1.28 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.88 3.21 -51.93 -0.17 0.71 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.56 6.41 -51.93 -0.33 0.23 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.38 10.52 7.61 -40.82 -0.31 10.21 16 43 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.11 2.41 6.52 -51.93 -0.34 2.07 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.21 1.61 5.91 -52.49 -0.31 1.30 16 47 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -36.36 392.08 -6.56 -42.92 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.67 Total: 7.83 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 0.25 Total: 4.76 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.08 Total: -63.48 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.10 Total: -15.85 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.36 -6.56 -42.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715325184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.258 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds