Wall clock time and date at job start Sat Apr 11 2020 04:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35353 * 117.00067 * 2 1 4 4 C 1.38992 * 126.40559 * 265.22155 * 3 2 1 5 5 C 1.46921 * 126.50205 * 359.97438 * 4 3 2 6 6 O 1.21671 * 119.99484 * 307.03368 * 5 4 3 7 7 N 1.34769 * 120.00536 * 127.02521 * 5 4 3 8 8 C 1.46928 * 120.63093 * 3.85785 * 7 5 4 9 9 C 1.53189 * 108.77898 * 233.58312 * 8 7 5 10 10 C 1.53041 * 109.31168 * 305.36322 * 9 8 7 11 11 C 1.53039 * 109.53870 * 61.36147 * 10 9 8 12 12 H 1.09005 * 109.49935 * 58.61956 * 11 10 9 13 13 C 1.52994 * 109.49944 * 178.68312 * 11 10 9 14 14 H 1.09005 * 109.47316 * 60.00174 * 13 11 10 15 15 C 1.52998 * 109.47371 * 300.00558 * 13 11 10 16 16 N 1.46506 * 109.47590 * 180.02562 * 13 11 10 17 17 C 1.36931 * 120.00421 * 205.00227 * 16 13 11 18 18 H 1.07995 * 120.00102 * 359.97438 * 17 16 13 19 19 C 1.38812 * 120.00061 * 179.97438 * 17 16 13 20 20 N 1.31620 * 119.99843 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00016 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47080 * 60.00073 * 21 19 17 23 23 H 1.48498 * 109.47149 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46930 * 299.99991 * 21 19 17 25 25 C 1.46927 * 120.63542 * 183.56924 * 7 5 4 26 26 C 1.41466 * 107.00599 * 180.25266 * 4 3 2 27 27 N 1.30313 * 108.13647 * 359.74573 * 26 4 3 28 28 N 1.34661 * 126.40345 * 85.03368 * 3 2 1 29 29 C 1.46500 * 125.74351 * 0.02562 * 28 3 2 30 30 H 1.09001 * 109.47579 * 304.98806 * 1 2 3 31 31 H 1.09003 * 109.46944 * 64.99191 * 1 2 3 32 32 H 1.09003 * 109.47132 * 184.98667 * 1 2 3 33 33 H 1.09004 * 109.58350 * 353.36966 * 8 7 5 34 34 H 1.09003 * 109.58789 * 113.78634 * 8 7 5 35 35 H 1.09000 * 109.49882 * 65.31059 * 9 8 7 36 36 H 1.08999 * 109.49987 * 185.37854 * 9 8 7 37 37 H 1.08994 * 109.46182 * 181.38138 * 10 9 8 38 38 H 1.09004 * 109.45598 * 301.35911 * 10 9 8 39 39 H 1.09001 * 109.46807 * 299.99337 * 15 13 11 40 40 H 1.08996 * 109.47108 * 59.99379 * 15 13 11 41 41 H 1.09000 * 109.47201 * 179.97438 * 15 13 11 42 42 H 0.97004 * 119.99174 * 24.99762 * 16 13 11 43 43 H 0.97006 * 119.99750 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.59074 * 246.20921 * 25 7 5 45 45 H 1.09007 * 109.58068 * 6.63673 * 25 7 5 46 46 H 1.07997 * 125.93094 * 179.72501 * 26 4 3 47 47 H 1.09003 * 109.46949 * 264.74356 * 29 28 3 48 48 H 1.08994 * 109.46916 * 24.74818 * 29 28 3 49 49 H 1.08998 * 109.46584 * 144.74300 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.5010 1.8987 -1.1148 5 6 2.4096 1.4606 -2.5142 6 8 2.8297 0.3654 -2.8373 7 7 1.8604 2.2716 -3.4398 8 6 1.4255 3.6288 -3.0825 9 6 -0.0364 3.8054 -3.5049 10 6 -0.1775 3.4712 -4.9917 11 6 0.2210 2.0127 -5.2285 12 1 -0.4129 1.3602 -4.6279 13 6 0.0482 1.6702 -6.7096 14 1 0.6831 2.3221 -7.3098 15 6 -1.4141 1.8709 -7.1124 16 7 0.4293 0.2737 -6.9356 17 6 0.8520 -0.1288 -8.1743 18 1 0.9041 0.5830 -8.9848 19 6 1.2135 -1.4519 -8.3882 20 7 1.1504 -2.3193 -7.4003 21 14 1.7908 -2.0008 -10.0779 22 1 3.0018 -1.2315 -10.4613 23 1 2.1144 -3.4497 -10.0438 24 1 0.7146 -1.7577 -11.0718 25 6 1.6910 1.8179 -4.8269 26 6 3.0772 3.1027 -0.6460 27 7 2.9655 3.1273 0.6521 28 7 2.3227 1.9607 1.0798 29 6 2.0117 1.6150 2.4690 30 1 -0.3634 0.5893 0.8419 31 1 -0.3633 0.4345 -0.9314 32 1 -0.3633 -1.0238 0.0893 33 1 1.5141 3.7691 -2.0052 34 1 2.0465 4.3598 -3.6004 35 1 -0.6674 3.1361 -2.9201 36 1 -0.3428 4.8372 -3.3327 37 1 -1.2122 3.6197 -5.3006 38 1 0.4727 4.1242 -5.5739 39 1 -2.0489 1.2190 -6.5123 40 1 -1.6979 2.9097 -6.9441 41 1 -1.5370 1.6273 -8.1676 42 1 0.3821 -0.3657 -6.2077 43 1 1.4027 -3.2439 -7.5500 44 1 2.3330 2.4041 -5.4843 45 1 1.9547 0.7628 -4.9009 46 1 3.5311 3.8682 -1.2578 47 1 1.0644 2.0729 2.7540 48 1 1.9355 0.5321 2.5656 49 1 2.8039 1.9831 3.1210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715325190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:45 Heat of formation + Delta-G solvation = 26.730177 kcal Electronic energy + Delta-G solvation = -30567.624523 eV Core-core repulsion = 26532.737080 eV Total energy + Delta-G solvation = -4034.887443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79074 -39.65184 -38.36329 -37.49829 -35.33215 -33.69329 -32.77125 -31.66587 -30.37510 -29.67563 -28.32630 -27.51793 -27.01364 -25.31141 -23.99291 -22.97268 -22.33063 -21.33586 -20.84951 -19.56497 -19.23027 -17.88782 -17.17727 -16.85824 -16.63134 -16.03264 -15.57439 -14.98742 -14.82924 -14.75447 -14.64443 -14.38389 -14.04927 -13.76390 -13.60079 -13.47476 -13.05950 -13.03842 -12.92377 -12.71160 -12.55950 -12.27025 -12.15041 -11.94316 -11.54889 -11.26985 -11.04292 -10.92670 -10.78938 -10.65532 -10.54970 -10.46583 -10.22179 -10.10227 -9.80466 -9.66709 -9.55117 -9.46259 -8.82240 -8.73593 -8.28396 -6.85598 -5.65065 -2.94278 1.14551 1.87092 2.09488 3.02093 3.23456 3.43352 3.50710 3.54931 3.56405 4.15894 4.65208 4.68920 4.73481 4.75181 4.84750 4.87683 4.97668 4.99530 5.02163 5.11340 5.15642 5.29946 5.31588 5.42034 5.44778 5.57636 5.66492 5.76930 5.82503 5.87679 5.88211 5.99973 6.07335 6.15169 6.19517 6.26232 6.28525 6.49544 6.56079 6.61082 6.79979 6.88048 6.98001 7.10792 7.15978 7.25846 7.70496 7.78766 8.52357 8.52727 9.63445 10.21569 10.55932 11.57024 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014643 B = 0.003199 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.660258 B = 8750.571827 C = 9614.423303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.298 6.298 3 C 0.304 3.696 4 C -0.279 4.279 5 C 0.589 3.411 6 O -0.520 6.520 7 N -0.606 5.606 8 C 0.104 3.896 9 C -0.132 4.132 10 C -0.114 4.114 11 C -0.102 4.102 12 H 0.068 0.932 13 C 0.180 3.820 14 H 0.047 0.953 15 C -0.164 4.164 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.068 0.932 19 C -0.012 4.012 20 N -0.929 5.929 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.288 1.288 25 C 0.125 3.875 26 C 0.089 3.911 27 N -0.279 5.279 28 N -0.373 5.373 29 C 0.095 3.905 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.052 0.948 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.195 0.805 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 14.936 20.009 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.207 6.207 3 C 0.132 3.868 4 C -0.295 4.295 5 C 0.376 3.624 6 O -0.395 6.395 7 N -0.339 5.339 8 C -0.019 4.019 9 C -0.170 4.170 10 C -0.152 4.152 11 C -0.122 4.122 12 H 0.086 0.914 13 C 0.070 3.930 14 H 0.065 0.935 15 C -0.224 4.224 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.003 3.997 26 C -0.097 4.097 27 N -0.102 5.102 28 N -0.163 5.163 29 C -0.046 4.046 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.125 0.875 46 H 0.212 0.788 47 H 0.096 0.904 48 H 0.111 0.889 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.603 14.637 20.830 25.592 hybrid contribution -0.150 -0.901 -1.308 1.595 sum -2.753 13.736 19.523 24.029 Atomic orbital electron populations 1.23218 0.76890 1.04543 1.01491 1.86103 1.21226 1.20439 1.92894 1.19228 0.96527 0.84762 0.86266 1.20010 1.17516 0.98367 0.93585 1.17082 0.77909 0.84142 0.83309 1.90888 1.46744 1.21084 1.80760 1.48038 1.61011 1.14417 1.10468 1.21821 0.95449 0.83748 1.00904 1.21902 0.96184 1.01352 0.97597 1.21629 1.01903 0.96703 0.95015 1.21830 0.96025 0.95766 0.98557 0.91369 1.20172 0.93385 0.88250 0.91239 0.93522 1.22482 0.99589 0.98667 1.01699 1.42439 1.78844 1.04175 1.11058 1.19137 1.36304 0.93262 0.88313 0.91382 1.24728 1.02481 0.96307 0.97297 1.69659 1.54335 1.03236 1.30437 0.86324 0.78534 0.77500 0.84132 1.21327 1.21797 1.21467 1.21786 0.95821 1.03133 0.78941 1.23860 0.97878 0.96267 0.91721 1.77172 1.18204 1.01573 1.13286 1.48853 1.45842 1.14738 1.06847 1.21962 1.02685 1.02372 0.77614 0.93329 0.92170 0.87322 0.89950 0.91399 0.91984 0.91176 0.91346 0.91818 0.93704 0.94332 0.92929 0.78193 0.93516 0.91732 0.87499 0.78791 0.90412 0.88945 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.13 101.05 1.12 1.44 16 2 O -0.30 -4.03 10.36 -17.75 -0.18 -4.21 16 3 C 0.30 4.07 7.02 -16.03 -0.11 3.96 16 4 C -0.28 -3.97 5.01 -104.87 -0.53 -4.49 16 5 C 0.59 10.24 7.54 -12.75 -0.10 10.15 16 6 O -0.52 -11.75 16.53 5.21 0.09 -11.67 16 7 N -0.61 -9.13 2.97 -173.95 -0.52 -9.64 16 8 C 0.10 1.11 6.01 -3.71 -0.02 1.09 16 9 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 10 C -0.11 -1.40 4.85 -26.69 -0.13 -1.53 16 11 C -0.10 -1.65 1.99 -90.28 -0.18 -1.83 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 13 C 0.18 3.49 2.47 -67.93 -0.17 3.32 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 C -0.16 -2.91 9.14 37.16 0.34 -2.57 16 16 N -0.72 -18.15 4.52 -53.43 -0.24 -18.39 16 17 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 21 Si 0.90 22.92 29.55 -169.99 -5.02 17.90 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C 0.12 2.20 5.49 -3.48 -0.02 2.18 16 26 C 0.09 1.01 9.74 -16.97 -0.17 0.84 16 27 N -0.28 -3.23 12.48 30.88 0.39 -2.84 16 28 N -0.37 -4.08 3.99 -67.67 -0.27 -4.35 16 29 C 0.09 0.60 11.42 59.85 0.68 1.28 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.79 4.80 -51.93 -0.25 0.54 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.56 6.40 -51.93 -0.33 0.22 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.38 10.50 7.64 -40.82 -0.31 10.19 16 43 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.11 2.40 6.56 -51.92 -0.34 2.06 16 46 H 0.20 1.58 7.90 -52.49 -0.41 1.16 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.50 8.01 -51.93 -0.42 0.09 16 49 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -36.36 395.81 -6.61 -42.97 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.86 Total: 7.34 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 0.32 Total: 5.08 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.08 Total: -63.37 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.10 Total: -15.88 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.36 -6.61 -42.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715325190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.701 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds