Wall clock time and date at job start Sat Apr 11 2020 04:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35348 * 117.00226 * 2 1 4 4 C 1.38996 * 126.40805 * 94.90908 * 3 2 1 5 5 C 1.46927 * 126.49265 * 359.71880 * 4 3 2 6 6 O 1.21663 * 120.00223 * 40.88364 * 5 4 3 7 7 N 1.34783 * 119.99640 * 220.87669 * 5 4 3 8 8 C 1.46926 * 120.63126 * 5.68240 * 7 5 4 9 9 C 1.53196 * 108.77765 * 126.36396 * 8 7 5 10 10 C 1.53038 * 109.30806 * 54.63340 * 9 8 7 11 11 C 1.53041 * 109.54238 * 298.63460 * 10 9 8 12 12 H 1.09000 * 109.49667 * 301.38289 * 11 10 9 13 13 C 1.52991 * 109.49943 * 181.31984 * 11 10 9 14 14 H 1.08999 * 109.47693 * 59.99817 * 13 11 10 15 15 C 1.53000 * 109.47110 * 299.99856 * 13 11 10 16 16 N 1.46505 * 109.47275 * 180.02562 * 13 11 10 17 17 C 1.36939 * 120.00116 * 204.99923 * 16 13 11 18 18 H 1.08002 * 119.99811 * 0.02562 * 17 16 13 19 19 C 1.38806 * 120.00094 * 179.97438 * 17 16 13 20 20 N 1.31625 * 119.99862 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00051 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47094 * 60.00452 * 21 19 17 23 23 H 1.48504 * 109.46898 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47097 * 300.00183 * 21 19 17 25 25 C 1.46924 * 120.62929 * 185.39579 * 7 5 4 26 26 C 1.41457 * 107.00707 * 179.97438 * 4 3 2 27 27 N 1.30308 * 108.14110 * 359.97438 * 26 4 3 28 28 N 1.34652 * 126.40434 * 274.88672 * 3 2 1 29 29 C 1.46504 * 125.74247 * 0.03792 * 28 3 2 30 30 H 1.08998 * 109.47086 * 298.86505 * 1 2 3 31 31 H 1.09002 * 109.46599 * 58.86133 * 1 2 3 32 32 H 1.08997 * 109.47092 * 178.86166 * 1 2 3 33 33 H 1.09004 * 109.58615 * 246.15317 * 8 7 5 34 34 H 1.09003 * 109.58437 * 6.43285 * 8 7 5 35 35 H 1.08993 * 109.49865 * 174.58712 * 9 8 7 36 36 H 1.09003 * 109.49637 * 294.68426 * 9 8 7 37 37 H 1.08998 * 109.46410 * 58.66068 * 10 9 8 38 38 H 1.09006 * 109.46018 * 178.63076 * 10 9 8 39 39 H 1.08996 * 109.47326 * 299.99958 * 15 13 11 40 40 H 1.09006 * 109.47238 * 60.00411 * 15 13 11 41 41 H 1.09010 * 109.47214 * 179.97438 * 15 13 11 42 42 H 0.96995 * 119.99587 * 24.99418 * 16 13 11 43 43 H 0.96998 * 119.99732 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.58624 * 353.42372 * 25 7 5 45 45 H 1.09005 * 109.58483 * 113.84600 * 25 7 5 46 46 H 1.08006 * 125.93104 * 179.97438 * 26 4 3 47 47 H 1.09005 * 109.46863 * 84.91949 * 29 28 3 48 48 H 1.09000 * 109.47005 * 204.91462 * 29 28 3 49 49 H 1.08996 * 109.46932 * 324.91415 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 6 2.5034 1.8975 1.1146 5 6 2.4092 1.4607 2.5142 6 8 2.6157 0.2971 2.8036 7 7 2.0942 2.3491 3.4776 8 6 1.7211 3.7275 3.1319 9 6 0.3708 4.0501 3.7796 10 6 0.4535 3.7797 5.2836 11 6 0.7620 2.2997 5.5215 12 1 -0.0162 1.6880 5.0650 13 6 0.8119 2.0238 7.0254 14 1 -0.1512 2.2703 7.4723 15 6 1.9054 2.8815 7.6653 16 7 1.1079 0.6070 7.2525 17 6 0.7161 0.0039 8.4178 18 1 0.1886 0.5725 9.1694 19 6 0.9960 -1.3386 8.6327 20 7 1.6384 -2.0317 7.7165 21 14 0.4623 -2.1612 10.2227 22 1 -1.0147 -2.0777 10.3516 23 1 0.8784 -3.5866 10.2064 24 1 1.0994 -1.4730 11.3741 25 6 2.1112 1.9557 4.8931 26 6 3.0739 3.1043 0.6463 27 7 2.9624 3.1290 -0.6517 28 7 2.3241 1.9599 -1.0798 29 6 2.0137 1.6140 -2.4692 30 1 -0.3633 0.4961 0.9000 31 1 -0.3632 0.5314 -0.8796 32 1 -0.3633 -1.0274 -0.0204 33 1 2.4793 4.4158 3.5054 34 1 1.6417 3.8238 2.0490 35 1 0.1280 5.0992 3.6113 36 1 -0.4034 3.4218 3.3390 37 1 1.2444 4.3901 5.7194 38 1 -0.4986 4.0316 5.7507 39 1 2.8686 2.6350 7.2185 40 1 1.6857 3.9357 7.4965 41 1 1.9407 2.6852 8.7370 42 1 1.5812 0.0962 6.5773 43 1 1.8344 -2.9698 7.8669 44 1 2.2866 0.8829 4.9722 45 1 2.9019 2.4966 5.4132 46 1 3.5239 3.8720 1.2585 47 1 0.9909 1.9135 -2.6983 48 1 2.7023 2.1335 -3.1355 49 1 2.1168 0.5377 -2.6073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715325196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:48 Heat of formation + Delta-G solvation = 30.173795 kcal Electronic energy + Delta-G solvation = -30524.880683 eV Core-core repulsion = 26490.142566 eV Total energy + Delta-G solvation = -4034.738117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81566 -39.74366 -38.36797 -37.56643 -35.33801 -33.71859 -32.75975 -31.76806 -30.31763 -29.65625 -28.14144 -27.45192 -27.01401 -25.36119 -24.32876 -23.12128 -22.40814 -21.36411 -21.00340 -19.65710 -18.58990 -17.91066 -17.22231 -16.85453 -16.66868 -16.03733 -15.52530 -14.99359 -14.82731 -14.66866 -14.66643 -14.55178 -14.01811 -13.88767 -13.66594 -13.47194 -13.15078 -13.08933 -12.82422 -12.78117 -12.55846 -12.33428 -12.19134 -11.81705 -11.58996 -11.44431 -11.04937 -10.92544 -10.78236 -10.56466 -10.48678 -10.36378 -10.19992 -10.13261 -9.82390 -9.67712 -9.55798 -9.43256 -8.81964 -8.77552 -8.26588 -6.85790 -5.64556 -2.94342 1.10369 1.85472 2.02957 3.09128 3.22232 3.46279 3.50034 3.54054 3.55798 4.13564 4.65024 4.67316 4.71254 4.74938 4.83920 4.87382 4.97332 4.99343 5.01207 5.08774 5.14605 5.28712 5.32049 5.39596 5.43970 5.57282 5.67265 5.76252 5.81476 5.84627 5.93011 5.95477 6.04469 6.10995 6.18402 6.21079 6.33026 6.45348 6.52257 6.67693 6.76120 6.89174 6.97477 7.09938 7.20833 7.23929 7.68468 7.78534 8.51780 8.53145 9.63619 10.22507 10.56535 11.57338 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003127 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.906179 B = 8952.087457 C =10113.759485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.296 6.296 3 C 0.310 3.690 4 C -0.283 4.283 5 C 0.588 3.412 6 O -0.521 6.521 7 N -0.606 5.606 8 C 0.104 3.896 9 C -0.133 4.133 10 C -0.114 4.114 11 C -0.103 4.103 12 H 0.071 0.929 13 C 0.181 3.819 14 H 0.048 0.952 15 C -0.169 4.169 16 N -0.725 5.725 17 C -0.240 4.240 18 H 0.068 0.932 19 C -0.013 4.013 20 N -0.929 5.929 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C 0.118 3.882 26 C 0.090 3.910 27 N -0.280 5.280 28 N -0.373 5.373 29 C 0.094 3.906 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.196 0.804 47 H 0.076 0.924 48 H 0.097 0.903 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 14.927 -20.636 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.205 6.205 3 C 0.137 3.863 4 C -0.298 4.298 5 C 0.375 3.625 6 O -0.396 6.396 7 N -0.340 5.340 8 C -0.020 4.020 9 C -0.171 4.171 10 C -0.152 4.152 11 C -0.123 4.123 12 H 0.090 0.910 13 C 0.070 3.930 14 H 0.066 0.934 15 C -0.229 4.229 16 N -0.368 5.368 17 C -0.371 4.371 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.576 5.576 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.003 4.003 26 C -0.097 4.097 27 N -0.103 5.103 28 N -0.163 5.163 29 C -0.047 4.047 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.088 0.912 46 H 0.213 0.787 47 H 0.095 0.905 48 H 0.116 0.884 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.716 14.553 -21.494 26.014 hybrid contribution -0.476 -0.979 1.294 1.691 sum -2.192 13.574 -20.201 24.436 Atomic orbital electron populations 1.23200 0.76853 1.04729 1.01223 1.86099 1.21200 1.20316 1.92853 1.19277 0.96037 0.84658 0.86292 1.20036 1.17860 0.98379 0.93558 1.17076 0.77102 0.85036 0.83276 1.90888 1.49183 1.17167 1.82362 1.47959 1.68027 1.11026 1.06964 1.21877 0.96588 0.83039 1.00459 1.21908 0.97085 1.01205 0.96920 1.21622 1.02010 0.96764 0.94811 1.21684 0.97335 0.95533 0.97761 0.91030 1.20163 0.96075 0.86350 0.90408 0.93442 1.22576 1.00622 0.98014 1.01702 1.42521 1.68945 1.04705 1.20602 1.19163 1.30184 0.92754 0.95012 0.91371 1.24747 1.01372 0.96745 0.98061 1.69671 1.45557 1.08436 1.33983 0.86317 0.78084 0.78611 0.83436 1.21418 1.21776 1.21388 1.21715 0.97366 1.03218 0.78024 1.23925 0.97741 0.96270 0.91729 1.77189 1.18389 1.01410 1.13323 1.48886 1.45867 1.14671 1.06877 1.21973 1.02434 1.02602 0.77641 0.92253 0.93388 0.87269 0.91427 0.89847 0.91107 0.91874 0.91368 0.91788 0.93252 0.94274 0.92963 0.77960 0.93475 0.88059 0.91197 0.78723 0.90506 0.88438 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.13 101.05 1.12 1.46 16 2 O -0.30 -3.99 10.46 -17.74 -0.19 -4.18 16 3 C 0.31 4.11 7.01 -16.03 -0.11 4.00 16 4 C -0.28 -3.97 5.20 -104.87 -0.55 -4.52 16 5 C 0.59 10.09 7.55 -12.74 -0.10 10.00 16 6 O -0.52 -11.57 16.51 5.22 0.09 -11.48 16 7 N -0.61 -8.99 2.98 -174.48 -0.52 -9.51 16 8 C 0.10 1.09 5.50 -3.71 -0.02 1.07 16 9 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 10 C -0.11 -1.41 4.78 -26.69 -0.13 -1.53 16 11 C -0.10 -1.71 2.32 -90.73 -0.21 -1.92 16 12 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 13 C 0.18 3.56 2.72 -67.93 -0.19 3.37 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 C -0.17 -2.99 8.79 37.16 0.33 -2.66 16 16 N -0.73 -18.51 5.04 -53.43 -0.27 -18.78 16 17 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 21 Si 0.90 22.94 29.55 -169.99 -5.02 17.91 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 C 0.12 2.04 5.21 -3.93 -0.02 2.02 16 26 C 0.09 0.99 9.62 -16.97 -0.16 0.83 16 27 N -0.28 -3.18 12.48 30.88 0.39 -2.80 16 28 N -0.37 -4.04 3.99 -67.67 -0.27 -4.31 16 29 C 0.09 0.58 11.38 59.85 0.68 1.27 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.78 4.80 -51.93 -0.25 0.53 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.79 6.50 -51.93 -0.34 0.45 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.88 6.32 -51.93 -0.33 0.55 16 40 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 41 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 42 H 0.39 10.66 6.16 -40.82 -0.25 10.41 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.10 2.20 5.57 -51.93 -0.29 1.91 16 45 H 0.07 1.15 6.16 -51.93 -0.32 0.83 16 46 H 0.20 1.54 7.40 -52.48 -0.39 1.15 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -36.81 389.40 -6.50 -43.31 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.54 Total: 7.92 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.24 Total: 4.45 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.05 Total: -63.79 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.10 Total: -15.66 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.81 -6.50 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715325196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.481 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds