Wall clock time and date at job start Sat Apr 11 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35346 * 117.00391 * 2 1 4 4 C 1.39000 * 126.40819 * 266.65669 * 3 2 1 5 5 C 1.46924 * 126.49329 * 0.02562 * 4 3 2 6 6 O 1.21666 * 119.99956 * 317.85818 * 5 4 3 7 7 N 1.34776 * 119.99740 * 137.85449 * 5 4 3 8 8 C 1.46927 * 120.63079 * 354.94017 * 7 5 4 9 9 C 1.53187 * 108.77497 * 233.58564 * 8 7 5 10 10 C 1.53043 * 109.31445 * 305.36237 * 9 8 7 11 11 C 1.53053 * 109.52259 * 61.37169 * 10 9 8 12 12 H 1.09004 * 109.49273 * 58.58270 * 11 10 9 13 13 C 1.52995 * 109.49442 * 178.67758 * 11 10 9 14 14 H 1.09005 * 109.47396 * 304.99803 * 13 11 10 15 15 C 1.52998 * 109.47416 * 65.00044 * 13 11 10 16 16 N 1.46500 * 109.47316 * 185.00232 * 13 11 10 17 17 C 1.36935 * 120.00563 * 155.00204 * 16 13 11 18 18 H 1.08001 * 119.99651 * 359.97438 * 17 16 13 19 19 C 1.38814 * 120.00186 * 180.02562 * 17 16 13 20 20 N 1.31623 * 119.99700 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46803 * 89.99800 * 21 19 17 23 23 H 1.48506 * 109.47243 * 209.99807 * 21 19 17 24 24 H 1.48505 * 109.47195 * 329.99923 * 21 19 17 25 25 C 1.46922 * 120.62909 * 174.91446 * 7 5 4 26 26 C 1.41465 * 107.00853 * 179.74774 * 4 3 2 27 27 N 1.30318 * 108.13341 * 0.22167 * 26 4 3 28 28 N 1.34659 * 126.40468 * 86.78862 * 3 2 1 29 29 C 1.46502 * 125.74442 * 0.02562 * 28 3 2 30 30 H 1.08995 * 109.47211 * 184.41322 * 1 2 3 31 31 H 1.08996 * 109.46942 * 304.41670 * 1 2 3 32 32 H 1.08996 * 109.46687 * 64.41307 * 1 2 3 33 33 H 1.09001 * 109.58576 * 113.79444 * 8 7 5 34 34 H 1.09000 * 109.58746 * 353.37135 * 8 7 5 35 35 H 1.09000 * 109.49867 * 185.41702 * 9 8 7 36 36 H 1.08995 * 109.50114 * 65.31278 * 9 8 7 37 37 H 1.08999 * 109.46358 * 181.38179 * 10 9 8 38 38 H 1.08998 * 109.46202 * 301.36411 * 10 9 8 39 39 H 1.09005 * 109.47035 * 59.99538 * 15 13 11 40 40 H 1.08995 * 109.47596 * 179.97438 * 15 13 11 41 41 H 1.08999 * 109.47015 * 300.00013 * 15 13 11 42 42 H 0.97001 * 119.99395 * 335.00156 * 16 13 11 43 43 H 0.96998 * 119.99300 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.58984 * 246.20630 * 25 7 5 45 45 H 1.09003 * 109.58790 * 6.62996 * 25 7 5 46 46 H 1.07992 * 125.92816 * 180.18575 * 26 4 3 47 47 H 1.08999 * 109.47266 * 276.07049 * 29 28 3 48 48 H 1.08992 * 109.46903 * 36.07587 * 29 28 3 49 49 H 1.09004 * 109.46797 * 156.07368 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4763 1.9113 -1.1168 5 6 2.3526 1.4895 -2.5187 6 8 2.5790 0.3350 -2.8288 7 7 1.9884 2.3815 -3.4612 8 6 1.6048 3.7499 -3.0883 9 6 0.2276 4.0559 -3.6852 10 6 0.2620 3.8018 -5.1940 11 6 0.5864 2.3294 -5.4574 12 1 -0.1648 1.7004 -4.9799 13 6 0.5882 2.0689 -6.9650 14 1 -0.3641 2.3866 -7.3899 15 6 1.7259 2.8567 -7.6175 16 7 0.7802 0.6379 -7.2131 17 6 0.3252 0.0775 -8.3767 18 1 -0.1756 0.6904 -9.1115 19 6 0.5067 -1.2786 -8.6115 20 7 1.1167 -2.0256 -7.7157 21 14 -0.1146 -2.0431 -10.1985 22 1 0.9506 -1.9751 -11.2309 23 1 -0.4783 -3.4623 -9.9552 24 1 -1.3102 -1.2998 -10.6712 25 6 1.9679 2.0041 -4.8809 26 6 3.0524 3.1153 -0.6480 27 7 2.9730 3.1235 0.6527 28 7 2.3523 1.9455 1.0821 29 6 2.0793 1.5806 2.4744 30 1 -0.3633 -1.0246 0.0791 31 1 -0.3633 0.5808 0.8477 32 1 -0.3632 0.4438 -0.9269 33 1 2.3380 4.4546 -3.4807 34 1 1.5593 3.8337 -2.0025 35 1 -0.0265 5.0991 -3.4977 36 1 -0.5201 3.4103 -3.2246 37 1 -0.7098 4.0422 -5.6250 38 1 1.0272 4.4295 -5.6506 39 1 2.6782 2.5390 -7.1927 40 1 1.7275 2.6708 -8.6915 41 1 1.5830 3.9214 -7.4330 42 1 1.2297 0.0873 -6.5530 43 1 1.2438 -2.9731 -7.8800 44 1 2.7306 2.5663 -5.4196 45 1 2.1619 0.9358 -4.9779 46 1 3.4837 3.8924 -1.2616 47 1 1.0570 1.8600 2.7295 48 1 2.2039 0.5051 2.5992 49 1 2.7738 2.1054 3.1304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715325200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:50 Heat of formation + Delta-G solvation = 29.486760 kcal Electronic energy + Delta-G solvation = -30516.993128 eV Core-core repulsion = 26482.225219 eV Total energy + Delta-G solvation = -4034.767909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81621 -39.74092 -38.36847 -37.56064 -35.34176 -33.72187 -32.75624 -31.79370 -30.31832 -29.66205 -28.10897 -27.45645 -27.01861 -25.35342 -24.36760 -23.11157 -22.42025 -21.36813 -20.98236 -19.65218 -18.62509 -17.91153 -17.21335 -16.86420 -16.66279 -16.04912 -15.55612 -14.98939 -14.82573 -14.68095 -14.66957 -14.54855 -14.02934 -13.88747 -13.67197 -13.47202 -13.13267 -13.08539 -12.83334 -12.76098 -12.54786 -12.37748 -12.19067 -11.83297 -11.58881 -11.44003 -11.05098 -10.94200 -10.80364 -10.57087 -10.48535 -10.35823 -10.18308 -10.14787 -9.82336 -9.68270 -9.57203 -9.44789 -8.82894 -8.77930 -8.27415 -6.86119 -5.65290 -2.94869 1.09938 1.85149 2.02777 3.07671 3.22027 3.45086 3.49288 3.53794 3.56065 4.13646 4.64535 4.67116 4.71498 4.75127 4.83166 4.86925 4.98358 4.99326 5.01391 5.08552 5.14175 5.28758 5.31992 5.39434 5.43169 5.56668 5.66888 5.74919 5.81715 5.84106 5.92213 5.95163 6.04041 6.10906 6.18197 6.20750 6.31789 6.45393 6.50867 6.66946 6.74566 6.87774 6.97902 7.09397 7.20295 7.23882 7.67095 7.78529 8.50429 8.52341 9.63052 10.22075 10.56183 11.56717 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.003110 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.709728 B = 8999.629037 C =10139.249770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.297 6.297 3 C 0.309 3.691 4 C -0.283 4.283 5 C 0.588 3.412 6 O -0.521 6.521 7 N -0.606 5.606 8 C 0.104 3.896 9 C -0.133 4.133 10 C -0.114 4.114 11 C -0.103 4.103 12 H 0.073 0.927 13 C 0.181 3.819 14 H 0.048 0.952 15 C -0.170 4.170 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.928 5.928 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.118 3.882 26 C 0.090 3.910 27 N -0.280 5.280 28 N -0.372 5.372 29 C 0.095 3.905 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.196 0.804 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 14.872 20.769 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.206 6.206 3 C 0.137 3.863 4 C -0.299 4.299 5 C 0.375 3.625 6 O -0.397 6.397 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.171 4.171 10 C -0.152 4.152 11 C -0.123 4.123 12 H 0.091 0.909 13 C 0.070 3.930 14 H 0.066 0.934 15 C -0.229 4.229 16 N -0.367 5.367 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.577 5.577 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.209 1.209 25 C -0.004 4.004 26 C -0.097 4.097 27 N -0.103 5.103 28 N -0.162 5.162 29 C -0.046 4.046 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.118 0.882 46 H 0.213 0.787 47 H 0.095 0.905 48 H 0.109 0.891 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.403 14.505 21.620 26.038 hybrid contribution -0.534 -0.965 -1.300 1.705 sum -0.937 13.540 20.319 24.435 Atomic orbital electron populations 1.23198 0.76777 1.04565 1.01420 1.86081 1.21238 1.20358 1.92895 1.19259 0.95976 0.84784 0.86269 1.20042 1.17944 0.98376 0.93530 1.17079 0.77162 0.84879 0.83349 1.90885 1.49479 1.17801 1.81517 1.47973 1.66925 1.11720 1.07352 1.21868 0.96367 0.83289 1.00404 1.21908 0.96885 1.01282 0.97043 1.21609 1.01967 0.96816 0.94768 1.21776 0.96992 0.95673 0.97876 0.90902 1.20168 0.96095 0.86439 0.90295 0.93437 1.22577 1.00637 0.98026 1.01710 1.42507 1.70014 1.02665 1.21552 1.19207 1.30394 0.91782 0.95602 0.91317 1.24749 1.01567 0.96489 0.98179 1.69683 1.47509 1.05845 1.34614 0.86242 0.78274 0.78588 0.83375 1.21834 1.21882 1.20895 1.21846 0.97241 1.03287 0.78001 1.23916 0.97676 0.96377 0.91704 1.77191 1.19036 1.00806 1.13269 1.48878 1.46162 1.14544 1.06649 1.21971 1.02756 1.02422 0.77481 0.87309 0.93380 0.92177 0.91409 0.89856 0.91106 0.91856 0.91764 0.91470 0.93169 0.92951 0.94332 0.78013 0.93541 0.91090 0.88171 0.78744 0.90517 0.89104 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.13 101.05 1.12 1.46 16 2 O -0.30 -4.00 10.45 -17.73 -0.19 -4.19 16 3 C 0.31 4.10 7.02 -16.03 -0.11 3.99 16 4 C -0.28 -3.96 5.17 -104.87 -0.54 -4.50 16 5 C 0.59 10.02 7.55 -12.74 -0.10 9.93 16 6 O -0.52 -11.51 16.51 5.22 0.09 -11.42 16 7 N -0.61 -8.91 2.97 -174.22 -0.52 -9.42 16 8 C 0.10 1.08 5.54 -3.71 -0.02 1.06 16 9 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 10 C -0.11 -1.40 4.89 -26.68 -0.13 -1.53 16 11 C -0.10 -1.70 2.27 -90.50 -0.21 -1.91 16 12 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 13 C 0.18 3.55 2.67 -67.93 -0.18 3.36 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 C -0.17 -2.99 8.76 37.16 0.33 -2.67 16 16 N -0.73 -18.48 5.06 -53.43 -0.27 -18.75 16 17 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 21 Si 0.90 22.91 29.55 -169.99 -5.02 17.88 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.12 2.00 5.18 -3.71 -0.02 1.98 16 26 C 0.09 0.99 9.63 -16.97 -0.16 0.82 16 27 N -0.28 -3.17 12.47 30.88 0.39 -2.79 16 28 N -0.37 -4.02 3.99 -67.67 -0.27 -4.29 16 29 C 0.09 0.59 11.38 59.85 0.68 1.27 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.77 4.83 -51.93 -0.25 0.52 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.77 6.63 -51.93 -0.34 0.43 16 39 H 0.05 0.89 6.23 -51.93 -0.32 0.57 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.55 6.60 -51.93 -0.34 0.21 16 42 H 0.39 10.66 6.48 -40.82 -0.26 10.40 16 43 H 0.25 7.74 8.31 -40.82 -0.34 7.41 16 44 H 0.07 1.14 6.06 -51.93 -0.31 0.82 16 45 H 0.10 2.15 5.81 -51.93 -0.30 1.84 16 46 H 0.20 1.52 7.46 -52.49 -0.39 1.13 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -36.75 390.11 -6.51 -43.26 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.57 Total: 7.81 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 0.25 Total: 4.38 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.05 Total: -63.60 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.10 Total: -15.61 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.75 -6.51 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715325200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.746 kcal (2) G-P(sol) polarization free energy of solvation -36.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds