Wall clock time and date at job start Sat Apr 11 2020 04:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46923 * 2 1 4 4 C 1.53001 * 109.47290 * 239.99376 * 2 1 3 5 5 N 1.46499 * 109.46869 * 185.00518 * 4 2 1 6 6 C 1.36942 * 120.00093 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.38807 * 119.99993 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00293 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99568 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47109 * 60.00217 * 10 8 6 12 12 H 1.48504 * 109.46828 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47353 * 299.99663 * 10 8 6 14 14 N 1.46504 * 109.46474 * 119.99341 * 2 1 3 15 15 C 1.46496 * 120.00003 * 60.00451 * 14 2 1 16 16 C 1.34782 * 119.99985 * 239.99731 * 14 2 1 17 17 O 1.21569 * 119.99947 * 3.51275 * 16 14 2 18 18 C 1.47702 * 119.99840 * 183.51155 * 16 14 2 19 19 C 1.41508 * 126.51875 * 173.48732 * 18 16 14 20 20 C 1.35360 * 105.50481 * 179.76107 * 19 18 16 21 21 N 1.35033 * 107.23071 * 0.37217 * 20 19 18 22 22 C 1.46503 * 124.88979 * 179.86650 * 21 20 19 23 23 C 1.53175 * 109.54126 * 325.17138 * 22 21 20 24 24 C 1.53093 * 109.16447 * 176.83979 * 23 22 21 25 25 O 1.42907 * 109.41471 * 302.39676 * 24 23 22 26 26 C 1.42901 * 114.09835 * 61.15472 * 25 24 23 27 27 C 1.53091 * 109.41456 * 298.84117 * 26 25 24 28 28 N 1.28475 * 110.22933 * 359.60758 * 21 20 19 29 29 H 1.09004 * 109.46428 * 60.00400 * 1 2 3 30 30 H 1.08995 * 109.47706 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47667 * 300.00955 * 1 2 3 32 32 H 1.09002 * 109.47040 * 304.99895 * 4 2 1 33 33 H 1.08994 * 109.46960 * 65.00768 * 4 2 1 34 34 H 0.97005 * 120.00273 * 0.02562 * 5 4 2 35 35 H 0.96997 * 119.99857 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47310 * 264.09813 * 15 14 2 37 37 H 1.09001 * 109.47103 * 24.10179 * 15 14 2 38 38 H 1.09002 * 109.47229 * 144.10222 * 15 14 2 39 39 H 1.07997 * 127.24443 * 0.02562 * 19 18 16 40 40 H 1.07997 * 126.38592 * 180.26303 * 20 19 18 41 41 H 1.08996 * 109.62122 * 204.94836 * 22 21 20 42 42 H 1.09000 * 109.52284 * 296.75018 * 23 22 21 43 43 H 1.09011 * 109.52292 * 56.94103 * 23 22 21 44 44 H 1.08996 * 109.48427 * 182.40846 * 24 23 22 45 45 H 1.09003 * 109.47491 * 62.37599 * 24 23 22 46 46 H 1.09004 * 109.47881 * 178.85767 * 26 25 24 47 47 H 1.09002 * 109.48235 * 58.82639 * 26 25 24 48 48 H 1.09002 * 109.52110 * 297.70226 * 27 26 25 49 49 H 1.08999 * 109.57257 * 177.54996 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8266 -1.1903 6 6 4.1840 -1.4382 -2.2069 7 1 3.6470 -1.8434 -3.0517 8 6 5.5674 -1.5374 -2.1514 9 7 6.2219 -1.0431 -1.1220 10 14 6.5002 -2.3724 -3.5378 11 1 6.2429 -1.6530 -4.8112 12 1 7.9551 -2.3474 -3.2409 13 1 6.0445 -3.7801 -3.6636 14 7 2.0182 -0.6905 1.1963 15 6 1.6642 -2.0930 1.4282 16 6 2.7931 -0.0355 2.0835 17 8 3.0343 1.1454 1.9243 18 6 3.3491 -0.7523 3.2491 19 6 4.2753 -0.2410 4.1888 20 6 4.4868 -1.2451 5.0716 21 7 3.7355 -2.2936 4.6722 22 6 3.6754 -3.5892 5.3535 23 6 5.0500 -3.9235 5.9409 24 6 4.9581 -5.2396 6.7175 25 8 3.9647 -5.1207 7.7379 26 6 2.6502 -4.8553 7.2444 27 6 2.6494 -3.5237 6.4890 28 7 3.0768 -1.9899 3.6118 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.6054 -1.7200 -1.2949 33 1 1.7518 -0.1585 -2.1369 34 1 3.9824 -0.4629 -0.4313 35 1 7.1886 -1.1128 -1.0831 36 1 0.7971 -2.1449 2.0867 37 1 1.4273 -2.5700 0.4772 38 1 2.5049 -2.6078 1.8934 39 1 4.7168 0.7446 4.2017 40 1 5.1368 -1.2141 5.9335 41 1 3.3843 -4.3631 4.6433 42 1 5.7756 -4.0265 5.1340 43 1 5.3628 -3.1248 6.6136 44 1 5.9230 -5.4608 7.1735 45 1 4.6846 -6.0453 6.0361 46 1 1.9525 -4.7996 8.0801 47 1 2.3465 -5.6560 6.5700 48 1 2.9136 -2.7170 7.1727 49 1 1.6583 -3.3397 6.0743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753689622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:23 Heat of formation + Delta-G solvation = 26.625116 kcal Electronic energy + Delta-G solvation = -30233.431765 eV Core-core repulsion = 26198.539766 eV Total energy + Delta-G solvation = -4034.891999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.62527 -39.75998 -39.17601 -36.21068 -35.04944 -33.87756 -32.00739 -31.73731 -30.86254 -30.35228 -29.71484 -26.45596 -25.79996 -25.45088 -24.20698 -23.22572 -22.32259 -22.07540 -20.27541 -20.06122 -18.78288 -17.70424 -16.98359 -16.70086 -16.61056 -16.25296 -15.86516 -15.64106 -15.27828 -14.81502 -14.63138 -14.20200 -13.98837 -13.64534 -13.54238 -13.37712 -13.14388 -13.08216 -12.86617 -12.57783 -12.20310 -12.11540 -12.01534 -11.97284 -11.87826 -11.77809 -11.41573 -11.37237 -10.97157 -10.78811 -10.70698 -10.47147 -10.26445 -10.22366 -10.00603 -9.62577 -9.52888 -9.06169 -8.87884 -8.79685 -8.07543 -6.81891 -5.65684 -2.94962 1.84408 2.34608 2.37206 3.36002 3.44810 3.47870 3.51710 3.53126 3.88685 3.93237 4.15449 4.36123 4.47011 4.61883 4.64922 4.69302 4.71551 4.91536 5.02179 5.08931 5.18245 5.20845 5.26628 5.42639 5.47579 5.51563 5.54504 5.61869 5.62915 5.67902 5.76858 5.86039 5.94971 5.97852 6.09932 6.20460 6.28076 6.32717 6.47368 6.59933 6.64640 6.65340 6.82875 6.88103 7.17778 7.75715 7.85824 8.09149 8.51432 8.69728 9.62602 10.22628 10.58023 11.56255 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.003386 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.439612 B = 8267.946498 C = 9635.378467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.240 4.240 7 H 0.068 0.932 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.583 5.583 15 C 0.084 3.916 16 C 0.604 3.396 17 O -0.537 6.537 18 C 0.002 3.998 19 C -0.174 4.174 20 C -0.022 4.022 21 N -0.285 5.285 22 C 0.151 3.849 23 C -0.168 4.168 24 C 0.066 3.934 25 O -0.381 6.381 26 C 0.065 3.935 27 C -0.166 4.166 28 N -0.256 5.256 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.029 0.971 34 H 0.386 0.614 35 H 0.254 0.746 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 -7.871 19.540 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.315 5.315 15 C -0.060 4.060 16 C 0.391 3.609 17 O -0.412 6.412 18 C -0.159 4.159 19 C -0.202 4.202 20 C -0.164 4.164 21 N -0.073 5.073 22 C 0.050 3.950 23 C -0.207 4.207 24 C -0.011 4.011 25 O -0.299 6.299 26 C -0.012 4.012 27 C -0.205 4.205 28 N -0.091 5.091 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.221 0.779 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.178 0.822 40 H 0.193 0.807 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.181 -8.376 19.236 22.901 hybrid contribution 1.269 0.278 -0.711 1.481 sum -7.911 -8.098 18.524 21.710 Atomic orbital electron populations 1.22043 0.95133 1.02032 1.01966 1.21424 0.93335 0.98511 0.84501 0.88141 1.21009 0.87129 0.96743 0.93594 1.42298 0.99689 1.70109 1.25086 1.19162 0.89423 1.29453 0.99070 0.91381 1.24737 0.96437 1.01750 0.97974 1.69689 1.07070 1.50724 1.30151 0.86304 0.79034 0.79209 0.81829 1.21309 1.21772 1.21441 1.47485 1.49534 1.12608 1.21851 1.21944 1.01288 0.81571 1.01181 1.16907 0.77781 0.85620 0.80641 1.90760 1.60000 1.15054 1.75425 1.21954 1.02868 0.91558 0.99485 1.21746 1.01949 1.01123 0.95375 1.22658 1.02209 0.88230 1.03282 1.45678 1.31331 1.11606 1.18645 1.21493 0.97124 0.82282 0.94129 1.22645 0.96009 1.00396 1.01626 1.22578 0.93060 0.94947 0.90524 1.87976 1.17133 1.91945 1.32843 1.22582 0.84952 0.94584 0.99085 1.22663 1.00196 1.00285 0.97350 1.73721 1.18385 1.15833 1.01163 0.91433 0.92439 0.92666 0.96200 0.95369 0.77936 0.93623 0.93766 0.91264 0.89034 0.82200 0.80737 0.87253 0.89090 0.89571 0.87713 0.92336 0.87951 0.92407 0.89988 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.19 37.16 0.34 -1.81 16 2 C 0.13 2.34 2.79 -67.93 -0.19 2.15 16 3 H 0.10 2.09 6.90 -51.93 -0.36 1.73 16 4 C 0.14 3.07 5.52 -4.04 -0.02 3.05 16 5 N -0.73 -19.69 5.43 -59.91 -0.33 -20.02 16 6 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -29.46 13.06 55.49 0.72 -28.74 16 10 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 N -0.58 -11.05 2.24 -175.10 -0.39 -11.44 16 15 C 0.08 1.37 8.65 59.84 0.52 1.89 16 16 C 0.60 12.60 7.38 -12.39 -0.09 12.51 16 17 O -0.54 -12.65 16.26 5.31 0.09 -12.56 16 18 C 0.00 0.03 6.82 -82.77 -0.56 -0.54 16 19 C -0.17 -2.78 10.81 -39.36 -0.43 -3.21 16 20 C -0.02 -0.27 10.54 -17.17 -0.18 -0.45 16 21 N -0.29 -3.61 3.22 -54.65 -0.18 -3.79 16 22 C 0.15 1.34 3.16 -67.75 -0.21 1.12 16 23 C -0.17 -1.21 5.10 -26.59 -0.14 -1.35 16 24 C 0.07 0.41 6.84 37.21 0.25 0.66 16 25 O -0.38 -2.92 10.77 -35.23 -0.38 -3.30 16 26 C 0.07 0.39 6.84 37.20 0.25 0.65 16 27 C -0.17 -1.20 5.75 -26.59 -0.15 -1.35 16 28 N -0.26 -4.07 8.50 33.42 0.28 -3.78 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.02 0.42 6.87 -51.93 -0.36 0.06 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.39 11.42 7.06 -40.82 -0.29 11.13 16 35 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 38 H 0.09 1.62 5.35 -51.93 -0.28 1.34 16 39 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.18 1.51 7.09 -52.49 -0.37 1.14 16 41 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.58 6.91 -51.92 -0.36 0.23 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -36.64 391.55 -7.95 -44.59 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.79 Total: 9.38 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.85 Total: 5.68 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: 0.11 Total: -67.78 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.29 Total: -15.86 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.64 -7.95 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753689622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.216 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds