Wall clock time and date at job start Sat Apr 11 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47576 * 2 1 4 4 C 1.53006 * 109.47024 * 120.00118 * 2 1 3 5 5 N 1.46500 * 109.46698 * 175.00133 * 4 2 1 6 6 C 1.36936 * 119.99850 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00096 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00116 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00079 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47183 * 59.99721 * 10 8 6 12 12 H 1.48499 * 109.46967 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47047 * 299.99919 * 10 8 6 14 14 N 1.46496 * 109.47055 * 239.99904 * 2 1 3 15 15 C 1.46500 * 120.00375 * 299.99822 * 14 2 1 16 16 C 1.34781 * 120.00187 * 120.00264 * 14 2 1 17 17 O 1.21569 * 119.99893 * 3.49498 * 16 14 2 18 18 C 1.47710 * 120.00120 * 183.50019 * 16 14 2 19 19 C 1.41502 * 126.51525 * 173.47885 * 18 16 14 20 20 C 1.35370 * 105.49817 * 179.76469 * 19 18 16 21 21 N 1.35029 * 107.22941 * 0.37231 * 20 19 18 22 22 C 1.46510 * 124.88334 * 179.87629 * 21 20 19 23 23 C 1.53173 * 109.54124 * 34.27660 * 22 21 20 24 24 C 1.53100 * 109.15894 * 183.15584 * 23 22 21 25 25 O 1.42901 * 109.41471 * 57.60681 * 24 23 22 26 26 C 1.42901 * 114.09594 * 298.83831 * 25 24 23 27 27 C 1.53092 * 109.41399 * 61.16621 * 26 25 24 28 28 N 1.28469 * 110.23403 * 359.60846 * 21 20 19 29 29 H 1.08995 * 109.47291 * 60.00120 * 1 2 3 30 30 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47093 * 299.99582 * 1 2 3 32 32 H 1.09001 * 109.47007 * 294.99205 * 4 2 1 33 33 H 1.09000 * 109.47078 * 55.00246 * 4 2 1 34 34 H 0.97003 * 120.00554 * 359.97438 * 5 4 2 35 35 H 0.97000 * 120.00470 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47531 * 264.10491 * 15 14 2 37 37 H 1.09009 * 109.47089 * 24.09868 * 15 14 2 38 38 H 1.09000 * 109.47598 * 144.09558 * 15 14 2 39 39 H 1.07990 * 127.25201 * 359.97438 * 19 18 16 40 40 H 1.08005 * 126.38411 * 180.26200 * 20 19 18 41 41 H 1.08997 * 109.61335 * 154.49479 * 22 21 20 42 42 H 1.09004 * 109.52094 * 303.05604 * 23 22 21 43 43 H 1.08995 * 109.52655 * 63.25004 * 23 22 21 44 44 H 1.08995 * 109.47836 * 297.62183 * 24 23 22 45 45 H 1.09004 * 109.47478 * 177.59190 * 24 23 22 46 46 H 1.08990 * 109.48373 * 301.17935 * 26 25 24 47 47 H 1.09004 * 109.47800 * 181.13918 * 26 25 24 48 48 H 1.08996 * 109.52395 * 182.48374 * 27 26 25 49 49 H 1.08997 * 109.57496 * 62.32214 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.1838 -1.4388 2.2067 7 1 3.6468 -1.8441 3.0515 8 6 5.5672 -1.5389 2.1508 9 7 6.2217 -1.0455 1.1210 10 14 6.5001 -2.3738 3.5373 11 1 6.0434 -3.7811 3.6641 12 1 7.9547 -2.3508 3.2394 13 1 6.2436 -1.6536 4.8104 14 7 2.0183 -0.6906 -1.1961 15 6 1.6645 -2.0932 -1.4280 16 6 2.7932 -0.0357 -2.0833 17 8 3.1395 1.1081 -1.8600 18 6 3.2217 -0.7075 -3.3271 19 6 3.9211 -0.1160 -4.4056 20 6 4.0980 -1.1080 -5.3095 21 7 3.5281 -2.2206 -4.7990 22 6 3.4939 -3.5254 -5.4644 23 6 4.7809 -3.7229 -6.2712 24 6 4.7020 -5.0530 -7.0254 25 8 3.5476 -5.0537 -7.8677 26 6 2.3114 -4.9199 -7.1634 27 6 2.2942 -3.5845 -6.4149 28 7 3.0251 -1.9719 -3.6433 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7199 1.2951 34 1 3.9824 -0.4628 0.4316 35 1 7.1883 -1.1157 1.0817 36 1 2.4667 -2.7353 -1.0643 37 1 0.7421 -2.3279 -0.8965 38 1 1.5211 -2.2601 -2.4955 39 1 4.2483 0.9098 -4.4885 40 1 4.5997 -1.0247 -6.2624 41 1 3.4069 -4.3148 -4.7178 42 1 4.8928 -2.9060 -6.9842 43 1 5.6359 -3.7376 -5.5955 44 1 4.6308 -5.8725 -6.3104 45 1 5.5969 -5.1788 -7.6349 46 1 2.2090 -5.7376 -6.4502 47 1 1.4841 -4.9497 -7.8724 48 1 1.3710 -3.5000 -5.8418 49 1 2.3553 -2.7642 -7.1301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753689623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:26 Heat of formation + Delta-G solvation = 27.241360 kcal Electronic energy + Delta-G solvation = -30191.573139 eV Core-core repulsion = 26156.707862 eV Total energy + Delta-G solvation = -4034.865276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.65417 -39.77171 -39.17373 -36.19299 -35.06611 -33.87130 -32.00518 -31.75254 -30.88793 -30.35314 -29.71728 -26.47215 -25.82031 -25.41746 -24.22546 -23.23296 -22.30082 -22.09745 -20.28279 -20.07825 -18.78910 -17.71741 -16.96590 -16.71949 -16.60721 -16.31049 -15.82621 -15.65240 -15.28763 -14.84018 -14.60538 -14.21499 -13.99612 -13.65141 -13.55277 -13.39035 -13.12421 -13.09625 -12.87636 -12.57077 -12.24239 -12.13257 -12.02722 -11.98294 -11.89663 -11.75519 -11.41628 -11.34874 -10.98828 -10.77468 -10.70326 -10.43477 -10.28673 -10.23792 -9.99403 -9.60320 -9.52993 -9.09069 -8.91078 -8.77926 -8.05091 -6.79556 -5.63384 -2.92662 1.82841 2.31498 2.34495 3.34687 3.46658 3.49271 3.52869 3.54521 3.85192 3.92169 4.13682 4.34468 4.45703 4.60073 4.66185 4.67627 4.71051 4.89549 5.00497 5.07339 5.16884 5.18815 5.24860 5.40601 5.45120 5.49266 5.52410 5.59968 5.62328 5.68900 5.70911 5.82293 5.89963 6.06680 6.10926 6.19339 6.29071 6.41481 6.49435 6.55119 6.62651 6.63790 6.84875 6.85317 7.18024 7.77515 7.85922 8.07612 8.53700 8.70687 9.64817 10.25524 10.60964 11.58515 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010969 B = 0.003285 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.018509 B = 8522.425034 C = 9773.368688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.239 4.239 7 H 0.068 0.932 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.286 1.286 14 N -0.583 5.583 15 C 0.081 3.919 16 C 0.603 3.397 17 O -0.534 6.534 18 C 0.001 3.999 19 C -0.177 4.177 20 C -0.022 4.022 21 N -0.285 5.285 22 C 0.150 3.850 23 C -0.168 4.168 24 C 0.066 3.934 25 O -0.380 6.380 26 C 0.065 3.935 27 C -0.166 4.166 28 N -0.254 5.254 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.387 0.613 35 H 0.254 0.746 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.029 -7.417 -20.366 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.119 0.881 4 C 0.017 3.983 5 N -0.372 5.372 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.213 1.213 14 N -0.315 5.315 15 C -0.062 4.062 16 C 0.389 3.611 17 O -0.409 6.409 18 C -0.159 4.159 19 C -0.205 4.205 20 C -0.164 4.164 21 N -0.073 5.073 22 C 0.049 3.951 23 C -0.206 4.206 24 C -0.011 4.011 25 O -0.299 6.299 26 C -0.012 4.012 27 C -0.205 4.205 28 N -0.089 5.089 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.178 0.822 40 H 0.193 0.807 41 H 0.128 0.872 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.076 0.924 47 H 0.121 0.879 48 H 0.105 0.895 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.265 -7.998 -19.933 23.805 hybrid contribution 1.228 0.307 0.657 1.426 sum -9.037 -7.690 -19.277 22.636 Atomic orbital electron populations 1.22068 0.95205 1.02037 1.02014 1.21418 0.93183 0.98535 0.84645 0.88148 1.20993 0.87163 0.96679 0.93513 1.42304 0.99696 1.70047 1.25141 1.19163 0.89427 1.29408 0.99085 0.91407 1.24743 0.96447 1.01784 0.97971 1.69694 1.07063 1.50750 1.30123 0.86303 0.79040 0.79207 0.81825 1.21450 1.21780 1.21318 1.47474 1.49846 1.12525 1.21696 1.21981 1.00400 0.81405 1.02404 1.16893 0.77961 0.85055 0.81227 1.90774 1.55837 1.17757 1.76536 1.21988 1.05592 0.90573 0.97751 1.21746 1.04424 1.00914 0.93392 1.22670 1.05027 0.86657 1.02044 1.45699 1.39734 1.09339 1.12488 1.21507 0.96632 0.82260 0.94695 1.22641 0.97131 1.00641 1.00226 1.22579 0.89369 0.94981 0.94196 1.87975 1.14054 1.93871 1.33989 1.22583 0.87182 0.94986 0.96465 1.22661 0.98472 1.00324 0.99027 1.73748 1.18353 1.17570 0.99224 0.92644 0.92366 0.91362 0.95501 0.96282 0.77824 0.93634 0.92130 0.92030 0.89629 0.82216 0.80728 0.87197 0.89583 0.89121 0.92314 0.87716 0.92372 0.87932 0.89504 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.18 37.16 0.34 -1.80 16 2 C 0.13 2.33 2.79 -67.93 -0.19 2.14 16 3 H 0.10 2.09 6.90 -51.93 -0.36 1.73 16 4 C 0.15 3.13 5.56 -4.04 -0.02 3.11 16 5 N -0.73 -19.94 5.43 -59.90 -0.33 -20.26 16 6 C -0.24 -7.07 9.99 -15.06 -0.15 -7.22 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -29.84 13.06 55.49 0.72 -29.12 16 10 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 N -0.58 -11.04 2.24 -175.09 -0.39 -11.43 16 15 C 0.08 1.33 8.75 59.85 0.52 1.86 16 16 C 0.60 12.54 7.38 -12.39 -0.09 12.44 16 17 O -0.53 -12.69 16.26 5.31 0.09 -12.60 16 18 C 0.00 0.02 6.82 -82.76 -0.56 -0.54 16 19 C -0.18 -2.73 10.81 -39.36 -0.43 -3.15 16 20 C -0.02 -0.26 10.53 -17.17 -0.18 -0.44 16 21 N -0.29 -3.54 3.23 -54.65 -0.18 -3.71 16 22 C 0.15 1.30 3.16 -67.74 -0.21 1.09 16 23 C -0.17 -1.16 5.09 -26.59 -0.14 -1.30 16 24 C 0.07 0.39 6.84 37.21 0.25 0.65 16 25 O -0.38 -2.86 10.77 -35.23 -0.38 -3.24 16 26 C 0.07 0.38 6.84 37.20 0.25 0.63 16 27 C -0.17 -1.16 5.75 -26.59 -0.15 -1.31 16 28 N -0.25 -4.01 8.50 33.42 0.28 -3.72 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.74 6.67 -51.93 -0.35 0.39 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 34 H 0.39 11.61 7.06 -40.82 -0.29 11.32 16 35 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.86 6.44 -51.92 -0.33 0.53 16 38 H 0.09 1.29 5.35 -51.93 -0.28 1.01 16 39 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.18 1.43 7.08 -52.48 -0.37 1.06 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.09 0.55 6.90 -51.93 -0.36 0.20 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 391.52 15.07 5.90 5.90 Total: -1.00 -37.29 391.52 -7.94 -45.23 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.78 Total: 9.02 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.85 Total: 5.65 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: 0.11 Total: -68.25 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.29 Total: -15.84 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.29 -7.94 -45.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753689623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.469 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds