Wall clock time and date at job start Sat Apr 11 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47186 * 2 1 4 4 N 1.39938 * 125.75229 * 269.68751 * 3 2 1 5 5 C 1.30452 * 108.89396 * 179.80742 * 4 3 2 6 6 C 1.41287 * 108.02751 * 0.44874 * 5 4 3 7 7 C 1.47422 * 126.41970 * 179.71690 * 6 5 4 8 8 O 1.21609 * 119.99942 * 246.02816 * 7 6 5 9 9 N 1.34777 * 120.00314 * 66.02264 * 7 6 5 10 10 C 1.46502 * 119.99488 * 5.40098 * 9 7 6 11 11 C 1.46497 * 120.00089 * 185.40167 * 9 7 6 12 12 C 1.52999 * 109.47200 * 90.00404 * 11 9 7 13 13 H 1.08999 * 109.47616 * 59.99224 * 12 11 9 14 14 O 1.42906 * 109.47080 * 299.99650 * 12 11 9 15 15 C 1.53002 * 109.47296 * 179.97438 * 12 11 9 16 16 N 1.46500 * 109.47025 * 184.99450 * 15 12 11 17 17 C 1.36944 * 119.99746 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99666 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00530 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99800 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47055 * 89.99764 * 21 19 17 23 23 H 1.48503 * 109.47332 * 210.00071 * 21 19 17 24 24 H 1.48501 * 109.47187 * 329.99936 * 21 19 17 25 25 C 1.34262 * 125.75910 * 89.99522 * 3 2 1 26 26 C 1.50702 * 126.28476 * 0.02562 * 25 3 2 27 27 C 1.53008 * 117.49638 * 196.28910 * 26 25 3 28 28 C 1.53005 * 117.49894 * 127.63380 * 26 25 3 29 29 H 1.08994 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46674 * 60.00395 * 1 2 3 31 31 H 1.08997 * 109.47034 * 300.00481 * 1 2 3 32 32 H 1.09003 * 109.46674 * 119.99605 * 2 1 3 33 33 H 1.08996 * 109.47548 * 239.99623 * 2 1 3 34 34 H 1.08002 * 125.98645 * 180.15666 * 5 4 3 35 35 H 1.09004 * 109.47126 * 84.59364 * 10 9 7 36 36 H 1.09002 * 109.46840 * 204.58965 * 10 9 7 37 37 H 1.08995 * 109.47540 * 324.59278 * 10 9 7 38 38 H 1.09009 * 109.46684 * 209.99626 * 11 9 7 39 39 H 1.08992 * 109.47454 * 329.99928 * 11 9 7 40 40 H 0.96696 * 113.99831 * 300.00551 * 14 12 11 41 41 H 1.09002 * 109.46859 * 304.99882 * 15 12 11 42 42 H 1.09001 * 109.46704 * 64.99831 * 15 12 11 43 43 H 0.96993 * 120.00075 * 0.02562 * 16 15 12 44 44 H 0.97001 * 120.00298 * 180.02562 * 20 19 17 45 45 H 1.09003 * 115.55518 * 341.95785 * 26 25 3 46 46 H 1.09003 * 117.49798 * 0.02562 * 27 26 25 47 47 H 1.08994 * 117.49742 * 145.01757 * 27 26 25 48 48 H 1.08997 * 117.49950 * 214.97411 * 28 26 25 49 49 H 1.09000 * 117.49419 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2967 2.1500 -1.1356 5 6 2.7070 3.3291 -0.7574 6 6 2.7166 3.3563 0.6552 7 6 3.1179 4.4914 1.5060 8 8 4.1084 4.4060 2.2064 9 7 2.3871 5.6239 1.5076 10 6 1.1307 5.6858 0.7566 11 6 2.8490 6.7927 2.2603 12 6 3.7272 7.6643 1.3603 13 1 3.1490 7.9934 0.4969 14 8 4.8552 6.9068 0.9174 15 6 4.2092 8.8855 2.1461 16 7 4.9503 9.7795 1.2530 17 6 5.4804 10.9457 1.7372 18 1 5.3524 11.2060 2.7775 19 6 6.1821 11.7931 0.8909 20 7 6.3376 11.4761 -0.3770 21 14 6.9057 13.3835 1.5515 22 1 8.2858 13.1340 2.0401 23 1 6.9400 14.3992 0.4686 24 1 6.0668 13.8816 2.6710 25 6 2.2798 2.1209 1.0895 26 6 2.1253 1.6828 2.5231 27 6 2.1067 2.7727 3.5968 28 6 3.3289 1.8628 3.4505 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 2.9941 4.1406 -1.4097 35 1 0.3229 5.2800 1.3657 36 1 0.9094 6.7227 0.5037 37 1 1.2250 5.1008 -0.1582 38 1 1.9887 7.3707 2.5980 39 1 3.4273 6.4637 3.1236 40 1 5.4161 6.5810 1.6345 41 1 3.3500 9.4143 2.5587 42 1 4.8604 8.5612 2.9578 43 1 5.0649 9.5459 0.3186 44 1 6.8283 12.0681 -0.9683 45 1 1.4937 0.8088 2.6822 46 1 2.2058 3.8067 3.2662 47 1 1.4631 2.6156 4.4623 48 1 3.4889 1.1075 4.2198 49 1 4.2326 2.2978 3.0235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725713232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:22 Heat of formation + Delta-G solvation = 39.675275 kcal Electronic energy + Delta-G solvation = -29962.961326 eV Core-core repulsion = 25928.635225 eV Total energy + Delta-G solvation = -4034.326101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.82169 -39.57366 -37.49283 -36.89569 -35.11850 -34.82186 -33.92584 -31.29684 -30.49803 -30.25132 -28.97910 -26.83570 -25.70224 -24.37788 -23.67418 -22.78469 -22.59263 -21.61081 -21.07726 -20.14752 -18.92752 -17.66794 -17.09644 -16.78323 -16.47302 -15.87177 -15.54507 -15.17278 -14.90413 -14.82048 -14.74313 -14.55701 -14.34273 -13.82182 -13.56757 -13.44889 -13.13963 -12.90392 -12.87731 -12.57416 -12.50014 -12.26578 -12.03905 -11.89772 -11.78839 -11.64661 -11.42519 -11.27382 -11.16865 -10.89347 -10.77722 -10.66399 -10.55970 -10.11843 -9.86946 -9.71513 -9.51850 -9.45096 -8.84505 -8.65726 -8.37791 -6.86396 -5.69899 -2.99082 1.40597 2.07461 2.24361 2.84769 3.13216 3.47375 3.51860 3.53870 3.62382 4.03247 4.12737 4.48728 4.51636 4.56157 4.60490 4.63441 4.71781 4.73523 4.85854 4.98499 5.09358 5.09657 5.15324 5.22600 5.28622 5.39318 5.43010 5.44743 5.50756 5.56720 5.60184 5.65260 5.68108 5.74446 5.81614 5.86915 6.04245 6.08714 6.27461 6.32042 6.56090 6.60372 6.63882 6.81427 7.41927 7.43414 7.73579 8.25485 8.30678 8.48544 9.59640 10.18312 10.53862 11.52558 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002368 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.948426 B =11821.262723 C =12285.614565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.359 5.359 4 N -0.295 5.295 5 C 0.088 3.912 6 C -0.280 4.280 7 C 0.608 3.392 8 O -0.532 6.532 9 N -0.604 5.604 10 C 0.082 3.918 11 C 0.084 3.916 12 C 0.086 3.914 13 H 0.095 0.905 14 O -0.548 6.548 15 C 0.126 3.874 16 N -0.725 5.725 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.166 3.834 26 C -0.121 4.121 27 C -0.160 4.160 28 C -0.150 4.150 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.191 0.809 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.374 0.626 41 H 0.024 0.976 42 H 0.021 0.979 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.117 0.883 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.310 -26.151 4.902 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.139 5.139 4 N -0.114 5.114 5 C -0.099 4.099 6 C -0.295 4.295 7 C 0.396 3.604 8 O -0.409 6.409 9 N -0.337 5.337 10 C -0.062 4.062 11 C -0.039 4.039 12 C 0.026 3.974 13 H 0.113 0.887 14 O -0.353 6.353 15 C -0.003 4.003 16 N -0.370 5.370 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.035 3.965 26 C -0.141 4.141 27 C -0.198 4.198 28 C -0.188 4.188 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.207 0.793 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.221 0.779 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.222 0.778 44 H 0.065 0.935 45 H 0.134 0.866 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.326 -26.832 3.743 31.630 hybrid contribution 0.674 1.307 1.034 1.797 sum -15.652 -25.524 4.777 30.320 Atomic orbital electron populations 1.22195 0.94022 1.03200 1.03422 1.21732 0.95382 0.77743 1.04686 1.48353 1.50370 1.12165 1.03007 1.77193 1.22683 1.04404 1.07167 1.23934 0.97090 0.95555 0.93332 1.19881 1.19764 0.95716 0.94146 1.17090 0.82028 0.81024 0.80297 1.90734 1.26115 1.81906 1.42174 1.47608 1.22926 1.12536 1.50606 1.21762 0.85065 1.03013 0.96325 1.22276 0.99716 0.86470 0.95446 1.22487 0.87233 0.90159 0.97557 0.88693 1.86545 1.39076 1.72314 1.37347 1.21240 0.95128 0.90430 0.93463 1.42254 1.64075 1.21286 1.09391 1.19220 1.27151 0.96379 0.94470 0.91288 1.24757 1.01369 0.99169 0.95720 1.69680 1.46324 1.38181 1.03669 0.86190 0.79132 0.83333 0.77512 1.21726 1.21790 1.20808 1.20361 0.96949 0.90266 0.88913 1.20512 1.05685 1.02471 0.85421 1.23182 1.01487 0.96604 0.98503 1.23246 0.93611 1.01968 0.99964 0.90350 0.91399 0.91933 0.88837 0.88360 0.79259 0.93019 0.90706 0.91161 0.89676 0.89309 0.77901 0.95844 0.96119 0.77751 0.93532 0.86553 0.87628 0.88126 0.88267 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.24 37.16 0.38 -0.44 16 2 C 0.13 0.77 6.84 -4.04 -0.03 0.75 16 3 N -0.36 -3.66 3.58 -56.60 -0.20 -3.86 16 4 N -0.30 -3.63 12.50 30.86 0.39 -3.25 16 5 C 0.09 1.09 10.45 -16.98 -0.18 0.91 16 6 C -0.28 -3.54 4.69 -105.07 -0.49 -4.04 16 7 C 0.61 8.38 3.97 -12.52 -0.05 8.33 16 8 O -0.53 -8.63 12.98 3.89 0.05 -8.58 16 9 N -0.60 -7.41 2.77 -182.85 -0.51 -7.91 16 10 C 0.08 0.79 10.23 59.85 0.61 1.40 16 11 C 0.08 1.10 5.15 -4.04 -0.02 1.07 16 12 C 0.09 1.45 3.27 -26.73 -0.09 1.36 16 13 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 14 O -0.55 -10.39 12.21 -36.61 -0.45 -10.83 16 15 C 0.13 2.55 5.90 -4.04 -0.02 2.52 16 16 N -0.73 -19.07 5.55 -59.91 -0.33 -19.40 16 17 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.42 5.50 -17.44 -0.10 -0.51 16 20 N -0.93 -29.10 13.06 55.49 0.72 -28.37 16 21 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 C 0.17 1.81 6.66 -81.60 -0.54 1.26 16 26 C -0.12 -1.05 5.79 -91.76 -0.53 -1.58 16 27 C -0.16 -1.48 9.58 -26.69 -0.26 -1.74 16 28 C -0.15 -1.41 9.71 -26.69 -0.26 -1.67 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.40 7.49 -51.93 -0.39 0.01 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 37 H 0.07 0.68 5.78 -51.93 -0.30 0.38 16 38 H 0.08 0.92 8.07 -51.92 -0.42 0.50 16 39 H 0.09 1.21 7.35 -51.93 -0.38 0.82 16 40 H 0.37 6.69 8.63 45.56 0.39 7.08 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.39 11.01 7.67 -40.82 -0.31 10.69 16 44 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.12 0.71 7.64 -51.93 -0.40 0.31 16 46 H 0.11 1.22 4.75 -51.93 -0.25 0.97 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.12 1.47 6.51 -51.93 -0.34 1.14 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -35.72 399.02 -8.07 -43.78 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -7.00 Total: 14.00 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.72 Total: 0.53 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.07 Total: -62.80 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.40 Total: -19.41 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.72 -8.07 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725713232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.460 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds