Wall clock time and date at job start Sat Apr 11 2020 04:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46795 * 2 1 4 4 C 1.47204 * 109.46824 * 240.00151 * 2 1 3 5 5 N 2.60799 * 109.46813 * 239.99955 * 2 1 3 6 6 C 1.50695 * 109.47222 * 120.00099 * 2 1 3 7 7 O 1.21279 * 120.00349 * 119.99435 * 6 2 1 8 8 N 1.34776 * 120.00164 * 299.99806 * 6 2 1 9 9 C 1.46501 * 120.00408 * 179.97438 * 8 6 2 10 10 C 1.53002 * 109.47483 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.52006 * 59.87502 * 10 9 8 12 12 C 1.53120 * 109.52114 * 299.68748 * 10 9 8 13 13 C 1.53036 * 109.27887 * 182.43883 * 12 10 9 14 14 N 1.46850 * 109.52309 * 59.17622 * 13 12 10 15 15 C 1.46900 * 111.00185 * 174.15886 * 14 13 12 16 16 C 1.50695 * 109.47195 * 190.59908 * 15 14 13 17 17 O 1.21293 * 120.00146 * 6.27733 * 16 15 14 18 18 N 1.34772 * 120.00000 * 186.26912 * 16 15 14 19 19 C 1.37104 * 120.00309 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99721 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00241 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00095 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00136 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46836 * 60.00059 * 23 21 19 25 25 H 1.48503 * 109.47506 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47141 * 300.00300 * 23 21 19 27 27 C 1.46848 * 111.19781 * 298.26376 * 14 13 12 28 28 C 1.53028 * 109.52813 * 61.74088 * 27 14 13 29 29 H 1.09009 * 109.46864 * 300.00272 * 1 2 3 30 30 H 1.08996 * 109.47278 * 59.99625 * 1 2 3 31 31 H 1.08992 * 109.47290 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99802 * 0.02562 * 8 6 2 33 33 H 1.08995 * 109.47092 * 300.00628 * 9 8 6 34 34 H 1.09000 * 109.46731 * 60.00207 * 9 8 6 35 35 H 1.08997 * 109.47411 * 59.99889 * 11 10 9 36 36 H 1.09001 * 109.47168 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47347 * 299.99984 * 11 10 9 38 38 H 1.08999 * 109.50121 * 302.37851 * 12 10 9 39 39 H 1.08999 * 109.50305 * 62.49612 * 12 10 9 40 40 H 1.08996 * 109.46520 * 299.16752 * 13 12 10 41 41 H 1.08998 * 109.46525 * 179.19001 * 13 12 10 42 42 H 1.08993 * 109.46983 * 310.60514 * 15 14 13 43 43 H 1.09002 * 109.46702 * 70.60545 * 15 14 13 44 44 H 0.96995 * 120.00351 * 0.02562 * 18 16 15 45 45 H 0.97004 * 120.00051 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.45875 * 301.71769 * 27 14 13 47 47 H 1.08999 * 109.45878 * 181.75596 * 27 14 13 48 48 H 1.08992 * 109.50727 * 180.88100 * 28 27 14 49 49 H 1.09000 * 109.53695 * 60.77580 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3992 -1.2295 -2.1294 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6965 1.1192 8 7 1.7069 -0.2500 2.4545 9 6 2.1947 -0.9409 3.6507 10 6 1.6844 -0.2199 4.9000 11 6 0.1544 -0.2165 4.8991 12 6 2.2006 1.2216 4.9057 13 6 1.7377 1.9190 6.1868 14 7 2.2512 1.1916 7.3546 15 6 1.9433 1.9091 8.5989 16 6 2.6996 1.2811 9.7411 17 8 3.5094 0.4048 9.5233 18 7 2.4763 1.6934 11.0047 19 6 3.1647 1.1224 12.0439 20 1 3.8857 0.3420 11.8499 21 6 2.9341 1.5471 13.3465 22 7 2.0565 2.4963 13.5826 23 14 3.8715 0.7687 14.7624 24 1 5.3283 0.9819 14.5682 25 1 3.4464 1.3937 16.0407 26 1 3.5857 -0.6879 14.8040 27 6 1.7310 -0.1810 7.3959 28 6 2.1937 -0.9412 6.1510 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.1489 0.5385 2.5435 33 1 1.8311 -1.9684 3.6505 34 1 3.2847 -0.9413 3.6508 35 1 -0.2113 -1.2433 4.8978 36 1 -0.2083 0.2977 5.7891 37 1 -0.2073 0.2991 4.0094 38 1 3.2899 1.2181 4.8665 39 1 1.8064 1.7527 4.0393 40 1 0.6483 1.9343 6.2187 41 1 2.1157 2.9413 6.2007 42 1 2.2381 2.9536 8.4985 43 1 0.8729 1.8510 8.7965 44 1 1.8285 2.3940 11.1790 45 1 1.8952 2.7925 14.4921 46 1 0.6416 -0.1559 7.4222 47 1 2.1041 -0.6840 8.2881 48 1 1.7945 -1.9551 6.1743 49 1 3.2829 -0.9792 6.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754716607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:47 Heat of formation + Delta-G solvation = -49.244439 kcal Electronic energy + Delta-G solvation = -28989.980511 eV Core-core repulsion = 24951.798562 eV Total energy + Delta-G solvation = -4038.181950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.75521 -39.67793 -38.07335 -36.97818 -35.77498 -34.25333 -33.83813 -32.96485 -31.23252 -30.82420 -28.82906 -27.38807 -26.22277 -25.54416 -24.07574 -23.28747 -21.83630 -21.11306 -19.18663 -18.85492 -18.23347 -17.86005 -17.70834 -16.24831 -15.98588 -15.79329 -15.57228 -15.06455 -14.89359 -14.64444 -14.54340 -14.35286 -14.13110 -13.90682 -13.68641 -13.53299 -13.38138 -13.17175 -13.07027 -12.83820 -12.56096 -12.35208 -12.30355 -12.05476 -12.02857 -11.91893 -11.65244 -11.51136 -11.38250 -11.10068 -11.01160 -10.71744 -10.48538 -10.45071 -10.31238 -10.21571 -10.17460 -9.46839 -9.45887 -8.42661 -7.97370 -7.83352 -6.42220 -3.82991 2.06267 2.07538 2.39426 2.90634 3.19526 3.25311 3.29622 3.32286 3.90690 3.95534 4.14932 4.22705 4.24028 4.40440 4.43438 4.49035 4.61568 4.89138 5.00155 5.03087 5.07491 5.21513 5.22239 5.26453 5.38252 5.39029 5.41163 5.48894 5.51868 5.62339 5.69730 5.73349 5.79269 5.82946 5.93435 5.95811 6.00054 6.05558 6.18501 6.27522 6.41115 6.45076 6.94381 7.15524 7.28902 7.41942 7.54498 7.70158 8.06040 8.61685 9.17924 9.54422 10.06456 10.75423 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.036977 B = 0.001835 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.047242 B =15257.030105 C =15573.753436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 H 0.141 0.859 4 C 0.221 3.779 5 N -0.412 5.412 6 C 0.520 3.480 7 O -0.527 6.527 8 N -0.718 5.718 9 C 0.130 3.870 10 C -0.074 4.074 11 C -0.146 4.146 12 C -0.103 4.103 13 C 0.054 3.946 14 N -0.514 5.514 15 C 0.047 3.953 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.056 3.944 28 C -0.099 4.099 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.402 0.598 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.391 0.609 45 H 0.272 0.728 46 H 0.025 0.975 47 H 0.098 0.902 48 H 0.066 0.934 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 1.764 -21.789 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 H 0.159 0.841 4 C -0.099 4.099 5 N -0.086 5.086 6 C 0.303 3.697 7 O -0.403 6.403 8 N -0.370 5.370 9 C 0.007 3.993 10 C -0.075 4.075 11 C -0.203 4.203 12 C -0.141 4.141 13 C -0.074 4.074 14 N -0.238 5.238 15 C -0.084 4.084 16 C 0.228 3.772 17 O -0.460 6.460 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.071 4.071 28 C -0.138 4.138 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.043 0.957 47 H 0.116 0.884 48 H 0.085 0.915 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.234 -0.304 -23.260 24.361 hybrid contribution -1.251 0.888 1.465 2.121 sum -8.486 0.584 -21.796 23.397 Atomic orbital electron populations 1.21813 0.89541 1.04424 1.04485 1.18856 0.98805 1.00290 0.85724 0.84109 1.28070 0.93862 0.93976 0.93977 1.81206 1.07581 1.07753 1.12110 1.19954 0.80744 0.84785 0.84200 1.90811 1.37133 1.25817 1.86517 1.45953 1.53587 1.32223 1.05281 1.21523 0.99679 0.95956 0.82126 1.20897 0.95884 0.96186 0.94511 1.21990 0.94345 1.02172 1.01811 1.21628 1.02088 0.93851 0.96517 1.22118 0.97042 0.97678 0.90594 1.61477 1.59597 1.01956 1.00805 1.21836 0.97924 0.98545 0.90131 1.19762 0.87034 0.86866 0.83537 1.90509 1.37882 1.33656 1.83917 1.41877 1.38004 1.35598 1.04744 1.19644 1.19856 1.18597 0.84747 0.87986 1.25244 0.97251 0.96670 0.98739 1.69604 1.34036 1.28726 1.22035 0.85930 0.79675 0.79117 0.79568 1.19912 1.21010 1.19944 1.22174 0.95963 0.89316 0.99658 1.21534 1.02223 0.97849 0.92153 0.89856 0.90148 0.90933 0.76152 0.91059 0.90771 0.92337 0.91722 0.93012 0.90536 0.92020 0.95003 0.90902 0.89393 0.93738 0.77556 0.91864 0.95656 0.88425 0.91510 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.26 9.04 37.16 0.34 0.07 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.35 16 3 H 0.14 0.11 8.14 -51.93 -0.42 -0.31 16 4 C 0.22 1.95 13.88 -20.76 -0.29 1.66 16 5 N -0.41 -5.00 18.54 42.15 0.78 -4.22 16 6 C 0.52 3.94 7.14 -10.99 -0.08 3.86 16 7 O -0.53 -6.80 16.03 5.56 0.09 -6.71 16 8 N -0.72 -3.99 4.87 -60.30 -0.29 -4.28 16 9 C 0.13 1.03 4.57 -4.04 -0.02 1.01 16 10 C -0.07 -0.60 0.53 -154.39 -0.08 -0.68 16 11 C -0.15 -0.99 7.73 37.15 0.29 -0.70 16 12 C -0.10 -0.85 4.68 -26.65 -0.12 -0.97 16 13 C 0.05 0.57 5.21 -3.83 -0.02 0.55 16 14 N -0.51 -7.65 4.35 -236.13 -1.03 -8.68 16 15 C 0.05 0.78 5.45 -4.98 -0.03 0.76 16 16 C 0.44 10.03 7.31 -10.99 -0.08 9.95 16 17 O -0.58 -14.99 14.29 5.55 0.08 -14.91 16 18 N -0.57 -13.92 5.29 -10.97 -0.06 -13.98 16 19 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 20 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 23 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 C 0.06 0.81 4.87 -3.84 -0.02 0.79 16 28 C -0.10 -1.13 4.88 -26.65 -0.13 -1.26 16 29 H 0.08 -0.02 7.56 -51.92 -0.39 -0.42 16 30 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.40 1.08 5.62 -40.82 -0.23 0.85 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.52 4.93 -51.93 -0.26 0.27 16 37 H 0.05 0.23 6.86 -51.92 -0.36 -0.13 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.33 6.96 -51.93 -0.36 -0.03 16 40 H 0.03 0.30 6.52 -51.93 -0.34 -0.03 16 41 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 42 H 0.09 1.33 7.97 -51.93 -0.41 0.92 16 43 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 44 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.03 0.33 6.51 -51.93 -0.34 0.00 16 47 H 0.10 1.81 6.06 -51.93 -0.31 1.49 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -35.48 392.61 -7.07 -42.54 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.48 Total: 5.08 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.78 Total: 6.89 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.13 Total: -54.55 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.48 -7.07 -42.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754716607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.702 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds