Wall clock time and date at job start Sat Apr 11 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46795 * 2 1 4 4 C 1.47204 * 109.46824 * 240.00151 * 2 1 3 5 5 N 2.60799 * 109.46813 * 239.99955 * 2 1 3 6 6 C 1.50695 * 109.47222 * 120.00099 * 2 1 3 7 7 O 1.21279 * 120.00349 * 119.99435 * 6 2 1 8 8 N 1.34776 * 120.00164 * 299.99806 * 6 2 1 9 9 C 1.46501 * 120.00408 * 179.97438 * 8 6 2 10 10 C 1.53002 * 109.47483 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.52006 * 59.87502 * 10 9 8 12 12 C 1.53120 * 109.52114 * 299.68748 * 10 9 8 13 13 C 1.53036 * 109.27887 * 182.43883 * 12 10 9 14 14 N 1.46850 * 109.52309 * 59.17622 * 13 12 10 15 15 C 1.46900 * 111.00185 * 174.15886 * 14 13 12 16 16 C 1.50695 * 109.47195 * 190.59908 * 15 14 13 17 17 O 1.21293 * 120.00146 * 6.27733 * 16 15 14 18 18 N 1.34772 * 120.00000 * 186.26912 * 16 15 14 19 19 C 1.37104 * 120.00309 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99721 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00241 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00095 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00136 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46836 * 60.00059 * 23 21 19 25 25 H 1.48503 * 109.47506 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47141 * 300.00300 * 23 21 19 27 27 C 1.46848 * 111.19781 * 298.26376 * 14 13 12 28 28 C 1.53028 * 109.52813 * 61.74088 * 27 14 13 29 29 H 1.09009 * 109.46864 * 300.00272 * 1 2 3 30 30 H 1.08996 * 109.47278 * 59.99625 * 1 2 3 31 31 H 1.08992 * 109.47290 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99802 * 0.02562 * 8 6 2 33 33 H 1.08995 * 109.47092 * 300.00628 * 9 8 6 34 34 H 1.09000 * 109.46731 * 60.00207 * 9 8 6 35 35 H 1.08997 * 109.47411 * 59.99889 * 11 10 9 36 36 H 1.09001 * 109.47168 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47347 * 299.99984 * 11 10 9 38 38 H 1.08999 * 109.50121 * 302.37851 * 12 10 9 39 39 H 1.08999 * 109.50305 * 62.49612 * 12 10 9 40 40 H 1.08996 * 109.46520 * 299.16752 * 13 12 10 41 41 H 1.08998 * 109.46525 * 179.19001 * 13 12 10 42 42 H 1.08993 * 109.46983 * 310.60514 * 15 14 13 43 43 H 1.09002 * 109.46702 * 70.60545 * 15 14 13 44 44 H 0.96995 * 120.00351 * 0.02562 * 18 16 15 45 45 H 0.97004 * 120.00051 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.45875 * 301.71769 * 27 14 13 47 47 H 1.08999 * 109.45878 * 181.75596 * 27 14 13 48 48 H 1.08992 * 109.50727 * 180.88100 * 28 27 14 49 49 H 1.09000 * 109.53695 * 60.77580 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3992 -1.2295 -2.1294 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6965 1.1192 8 7 1.7069 -0.2500 2.4545 9 6 2.1947 -0.9409 3.6507 10 6 1.6844 -0.2199 4.9000 11 6 0.1544 -0.2165 4.8991 12 6 2.2006 1.2216 4.9057 13 6 1.7377 1.9190 6.1868 14 7 2.2512 1.1916 7.3546 15 6 1.9433 1.9091 8.5989 16 6 2.6996 1.2811 9.7411 17 8 3.5094 0.4048 9.5233 18 7 2.4763 1.6934 11.0047 19 6 3.1647 1.1224 12.0439 20 1 3.8857 0.3420 11.8499 21 6 2.9341 1.5471 13.3465 22 7 2.0565 2.4963 13.5826 23 14 3.8715 0.7687 14.7624 24 1 5.3283 0.9819 14.5682 25 1 3.4464 1.3937 16.0407 26 1 3.5857 -0.6879 14.8040 27 6 1.7310 -0.1810 7.3959 28 6 2.1937 -0.9412 6.1510 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.1489 0.5385 2.5435 33 1 1.8311 -1.9684 3.6505 34 1 3.2847 -0.9413 3.6508 35 1 -0.2113 -1.2433 4.8978 36 1 -0.2083 0.2977 5.7891 37 1 -0.2073 0.2991 4.0094 38 1 3.2899 1.2181 4.8665 39 1 1.8064 1.7527 4.0393 40 1 0.6483 1.9343 6.2187 41 1 2.1157 2.9413 6.2007 42 1 2.2381 2.9536 8.4985 43 1 0.8729 1.8510 8.7965 44 1 1.8285 2.3940 11.1790 45 1 1.8952 2.7925 14.4921 46 1 0.6416 -0.1559 7.4222 47 1 2.1041 -0.6840 8.2881 48 1 1.7945 -1.9551 6.1743 49 1 3.2829 -0.9792 6.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754716607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:46 Heat of formation + Delta-G solvation = -76.838096 kcal Electronic energy + Delta-G solvation = -28991.177062 eV Core-core repulsion = 24951.798562 eV Total energy + Delta-G solvation = -4039.378500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45796 -40.66416 -39.63689 -37.72303 -36.77979 -35.82975 -34.81713 -33.64845 -33.19454 -31.72102 -29.92847 -27.99694 -27.45400 -26.13837 -25.52209 -24.18575 -22.75201 -21.83067 -20.94870 -19.84353 -19.53174 -18.92249 -18.20198 -17.67566 -16.81734 -16.69640 -16.48216 -16.40222 -16.15130 -15.81987 -15.46678 -15.31327 -15.23136 -15.11540 -14.78498 -14.37936 -14.17423 -14.08008 -13.83989 -13.72923 -13.44910 -13.36492 -13.16835 -13.05200 -12.85229 -12.78773 -12.71867 -12.44868 -12.42073 -12.38276 -12.35881 -12.11763 -11.96675 -11.53375 -11.49019 -11.27899 -11.09133 -10.89979 -10.20926 -10.08971 -9.96241 -9.01165 -8.43953 -5.92093 1.40544 1.42327 1.44749 1.51921 1.52757 1.74596 2.10861 2.30383 2.33898 2.83376 2.86726 3.23326 3.44710 3.68592 3.72784 3.81043 3.89363 3.99186 4.23166 4.28326 4.32518 4.39499 4.39935 4.52848 4.55634 4.62557 4.72327 4.76822 4.86254 4.87318 4.88406 4.90974 4.93643 5.06953 5.13783 5.21017 5.24589 5.33391 5.35170 5.41374 5.43274 5.44944 5.60460 5.96645 6.18922 6.40585 6.41948 6.58589 6.65021 7.16808 7.20716 7.61470 8.18158 8.73122 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.036977 B = 0.001835 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.047242 B =15257.030105 C =15573.753436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 H 0.190 0.810 4 C 0.241 3.759 5 N -0.482 5.482 6 C 0.521 3.479 7 O -0.589 6.589 8 N -0.696 5.696 9 C 0.138 3.862 10 C -0.061 4.061 11 C -0.144 4.144 12 C -0.100 4.100 13 C 0.051 3.949 14 N -0.537 5.537 15 C 0.060 3.940 16 C 0.440 3.560 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.062 3.938 28 C -0.097 4.097 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.422 0.578 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.041 0.959 47 H 0.045 0.955 48 H 0.071 0.929 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 4.109 -22.920 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 H 0.207 0.793 4 C -0.077 4.077 5 N -0.158 5.158 6 C 0.306 3.694 7 O -0.469 6.469 8 N -0.350 5.350 9 C 0.014 3.986 10 C -0.061 4.061 11 C -0.201 4.201 12 C -0.137 4.137 13 C -0.075 4.075 14 N -0.262 5.262 15 C -0.072 4.072 16 C 0.227 3.773 17 O -0.501 6.501 18 N -0.214 5.214 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.066 4.066 28 C -0.135 4.135 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.128 0.872 43 H 0.083 0.917 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.090 0.910 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.571 2.099 -24.398 26.292 hybrid contribution -0.531 0.145 1.815 1.897 sum -10.102 2.244 -22.582 24.841 Atomic orbital electron populations 1.21921 0.86982 1.04202 1.06943 1.19210 1.00496 1.01246 0.81735 0.79345 1.29002 0.92091 0.92588 0.94041 1.81214 1.09951 1.09934 1.14666 1.20496 0.79606 0.83962 0.85357 1.90806 1.40005 1.28681 1.87361 1.45699 1.53019 1.32317 1.03962 1.21250 0.98534 0.95858 0.82959 1.20731 0.97177 0.95748 0.92460 1.21985 0.92402 1.02595 1.03104 1.21663 1.01132 0.93822 0.97116 1.22288 0.98315 0.97738 0.89199 1.61440 1.61035 1.02322 1.01439 1.21699 0.97867 0.98949 0.88636 1.20916 0.86275 0.85764 0.84316 1.90485 1.39642 1.35307 1.84674 1.41948 1.38319 1.36013 1.05148 1.19590 1.20838 1.19311 0.86417 0.90545 1.25972 0.97865 0.96935 1.00401 1.69661 1.34508 1.29132 1.22813 0.85037 0.78301 0.78279 0.77003 1.19906 1.19467 1.19859 1.22010 0.96573 0.89307 0.98719 1.21474 1.00658 0.98422 0.92992 0.86516 0.88588 0.92564 0.73810 0.92006 0.92807 0.92531 0.92551 0.89472 0.92481 0.87595 0.92865 0.89940 0.87229 0.91726 0.77070 0.91382 0.94066 0.93652 0.91004 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.13 9.04 71.98 0.65 0.78 16 2 C 0.00 -0.01 3.10 -13.34 -0.04 -0.06 16 3 H 0.19 -0.79 8.14 -2.39 -0.02 -0.81 16 4 C 0.24 3.96 13.88 89.44 1.24 5.21 16 5 N -0.48 -11.83 18.54 20.01 0.37 -11.46 16 6 C 0.52 6.60 7.14 87.66 0.63 7.23 16 7 O -0.59 -15.06 16.03 -3.03 -0.05 -15.11 16 8 N -0.70 -5.20 4.87 -463.07 -2.26 -7.46 16 9 C 0.14 1.95 4.57 86.38 0.39 2.35 16 10 C -0.06 -0.84 0.53 -52.10 -0.03 -0.86 16 11 C -0.14 -1.36 7.73 71.98 0.56 -0.80 16 12 C -0.10 -1.29 4.68 30.65 0.14 -1.15 16 13 C 0.05 0.90 5.21 86.32 0.45 1.35 16 14 N -0.54 -15.48 4.35 -900.97 -3.92 -19.40 16 15 C 0.06 1.93 5.45 85.56 0.47 2.40 16 16 C 0.44 20.48 7.31 87.66 0.64 21.12 16 17 O -0.62 -33.67 14.29 -3.07 -0.04 -33.71 16 18 N -0.58 -29.14 5.29 -306.99 -1.62 -30.76 16 19 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 20 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 21 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 22 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 23 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.06 1.79 4.87 86.32 0.42 2.21 16 28 C -0.10 -2.22 4.88 30.64 0.15 -2.08 16 29 H 0.12 -0.84 7.56 -2.38 -0.02 -0.85 16 30 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.42 -0.28 5.62 -92.70 -0.52 -0.80 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.68 4.93 -2.39 -0.01 0.66 16 37 H 0.09 0.22 6.86 -2.38 -0.02 0.20 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.47 6.96 -2.39 -0.02 0.45 16 40 H 0.05 0.75 6.52 -2.39 -0.02 0.74 16 41 H 0.08 1.33 8.01 -2.39 -0.02 1.31 16 42 H 0.11 3.09 7.97 -2.39 -0.02 3.07 16 43 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 44 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 45 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 46 H 0.04 1.04 6.51 -2.39 -0.02 1.03 16 47 H 0.04 1.79 6.06 -2.39 -0.01 1.77 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -85.27 392.61 1.48 -83.79 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.26 Total: 18.47 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.95 Total: 19.60 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -7.14 Total: -117.90 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.09 Total: -48.82 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -85.27 1.48 -83.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754716607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.947 kcal (2) G-P(sol) polarization free energy of solvation -85.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds