Wall clock time and date at job start Sat Apr 11 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42888 * 109.47576 * 2 1 4 4 C 1.42902 * 114.00135 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.42966 * 27.46466 * 4 3 2 6 6 C 1.54891 * 110.59924 * 264.84307 * 4 3 2 7 7 C 1.54899 * 102.74611 * 203.32172 * 6 4 3 8 8 C 1.54266 * 104.19319 * 37.94376 * 7 6 4 9 9 C 1.53869 * 106.60080 * 336.39001 * 8 7 6 10 10 H 1.09001 * 110.03290 * 119.28917 * 9 8 7 11 11 N 1.46508 * 110.03177 * 240.71362 * 9 8 7 12 12 C 1.34777 * 120.00036 * 272.17115 * 11 9 8 13 13 O 1.21596 * 120.00074 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99898 * 179.97438 * 12 11 9 15 15 C 1.40199 * 120.00021 * 179.97438 * 14 12 11 16 16 C 1.40399 * 125.96883 * 0.02562 * 15 14 12 17 17 C 1.35249 * 107.86504 * 179.97438 * 16 15 14 18 18 C 1.50696 * 126.07013 * 179.97438 * 17 16 15 19 19 N 1.34961 * 107.85754 * 0.02562 * 17 16 15 20 20 C 1.46501 * 125.97671 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47202 * 89.99582 * 20 19 17 22 22 H 1.08001 * 119.99949 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00119 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99808 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00039 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47151 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46832 * 120.00230 * 25 23 21 28 28 H 1.48493 * 109.46988 * 239.99957 * 25 23 21 29 29 N 1.31199 * 125.97117 * 179.69004 * 15 14 12 30 30 H 1.09005 * 109.46698 * 299.99913 * 1 2 3 31 31 H 1.09004 * 109.47133 * 59.99392 * 1 2 3 32 32 H 1.08993 * 109.47631 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46698 * 240.00087 * 2 1 3 34 34 H 1.08997 * 109.46867 * 120.00853 * 2 1 3 35 35 H 1.08997 * 110.75776 * 321.63810 * 6 4 3 36 36 H 1.08994 * 110.75338 * 85.01097 * 6 4 3 37 37 H 1.08998 * 110.47995 * 156.61949 * 7 6 4 38 38 H 1.08993 * 110.48304 * 279.13227 * 7 6 4 39 39 H 1.08999 * 110.03333 * 217.10101 * 8 7 6 40 40 H 1.09009 * 110.02965 * 95.67370 * 8 7 6 41 41 H 0.97000 * 119.99349 * 92.16390 * 11 9 8 42 42 H 0.97000 * 119.99794 * 359.97438 * 14 12 11 43 43 H 1.08004 * 126.06940 * 359.97438 * 16 15 14 44 44 H 1.09000 * 109.47163 * 89.97562 * 18 17 16 45 45 H 1.09002 * 109.47341 * 209.97433 * 18 17 16 46 46 H 1.09006 * 109.47225 * 329.97483 * 18 17 16 47 47 H 1.09000 * 109.47519 * 209.99759 * 20 19 17 48 48 H 1.09001 * 109.47022 * 330.00164 * 20 19 17 49 49 H 0.96996 * 120.00031 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4599 0.0006 5 1 3.8820 0.5864 -0.4702 6 6 3.9634 1.6330 1.4448 7 6 5.3321 2.3237 1.2240 8 6 5.0795 3.2992 0.0559 9 6 3.8708 2.7500 -0.7219 10 1 3.0594 3.4778 -0.7135 11 7 4.2582 2.4454 -2.1016 12 6 4.1908 3.4031 -3.0476 13 8 3.8080 4.5198 -2.7560 14 7 4.5476 3.1230 -4.3166 15 6 4.4770 4.1190 -5.3008 16 6 4.0555 5.4438 -5.1045 17 6 4.1319 6.0839 -6.2934 18 6 3.7751 7.5255 -6.5495 19 7 4.5832 5.2021 -7.2100 20 6 4.8141 5.4791 -8.6300 21 6 6.2305 5.9554 -8.8251 22 1 6.8926 6.0426 -7.9763 23 6 6.6812 6.2798 -10.0871 24 7 5.8747 6.1740 -11.1206 25 14 8.4370 6.8694 -10.3290 26 1 9.1336 6.9011 -9.0180 27 1 9.1484 5.9429 -11.2459 28 1 8.4247 8.2336 -10.9155 29 7 4.7991 3.9777 -6.5647 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.2986 2.2704 2.0277 36 1 4.0929 0.6644 1.9274 37 1 5.6327 2.8693 2.1184 38 1 6.0906 1.5893 0.9531 39 1 5.9543 3.3391 -0.5931 40 1 4.8547 4.2936 0.4419 41 1 4.5632 1.5545 -2.3342 42 1 4.8533 2.2322 -4.5491 43 1 3.7284 5.8752 -4.1700 44 1 4.6558 8.1499 -6.3997 45 1 3.4216 7.6358 -7.5747 46 1 2.9896 7.8335 -5.8593 47 1 4.6538 4.5693 -9.2084 48 1 4.1218 6.2506 -8.9669 49 1 6.1918 6.4018 -12.0085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455115708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:47:41 Heat of formation + Delta-G solvation = -6.193701 kcal Electronic energy + Delta-G solvation = -28831.985345 eV Core-core repulsion = 24795.670215 eV Total energy + Delta-G solvation = -4036.315130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79860 -40.04756 -38.90214 -36.74063 -34.71980 -33.86160 -33.23051 -31.55787 -31.33880 -30.73735 -28.18625 -27.58906 -26.45743 -26.22833 -23.27831 -23.07780 -21.91368 -21.38909 -20.37108 -19.81630 -19.52127 -17.93479 -17.27912 -16.71198 -16.59942 -15.95992 -15.80321 -15.43481 -15.15008 -14.90516 -14.59130 -14.20671 -14.04184 -13.84480 -13.72459 -13.36447 -13.06891 -12.90833 -12.46179 -12.42089 -12.33565 -12.23280 -12.01199 -11.80523 -11.62769 -11.54987 -11.44553 -11.36135 -11.06899 -11.01141 -10.87540 -10.82618 -10.39262 -10.23250 -10.01154 -9.91245 -9.61297 -9.48737 -9.15529 -8.62731 -7.86776 -7.35914 -6.23347 -4.30617 2.37998 2.69628 3.14382 3.21386 3.24478 3.29218 3.35504 3.64366 3.87434 4.10404 4.24856 4.32485 4.41706 4.55048 4.68257 4.75236 4.84380 4.99072 5.08315 5.10285 5.10496 5.23649 5.24255 5.37194 5.44882 5.50353 5.55413 5.66430 5.69802 5.75512 5.81023 5.89368 5.93829 5.98274 6.16003 6.25635 6.36063 6.50528 6.64346 6.67088 6.89572 6.98921 7.08976 7.17622 7.57341 7.69977 7.91787 7.99190 8.11281 8.64776 8.71578 8.79497 9.35510 10.83836 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002119 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.623723 B =13208.645638 C =13697.158565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.374 6.374 4 C 0.079 3.921 5 H 0.071 0.929 6 C -0.142 4.142 7 C -0.123 4.123 8 C -0.134 4.134 9 C 0.163 3.837 10 H 0.106 0.894 11 N -0.739 5.739 12 C 0.714 3.286 13 O -0.563 6.563 14 N -0.644 5.644 15 C 0.283 3.717 16 C -0.288 4.288 17 C 0.090 3.910 18 C -0.083 4.083 19 N -0.319 5.319 20 C 0.259 3.741 21 C -0.533 4.533 22 H 0.065 0.935 23 C 0.064 3.936 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 N -0.325 5.325 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.394 0.606 42 H 0.405 0.595 43 H 0.160 0.840 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -11.552 24.362 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.293 6.293 4 C 0.020 3.980 5 H 0.089 0.911 6 C -0.180 4.180 7 C -0.160 4.160 8 C -0.173 4.173 9 C 0.058 3.942 10 H 0.124 0.876 11 N -0.395 5.395 12 C 0.414 3.586 13 O -0.438 6.438 14 N -0.294 5.294 15 C 0.029 3.971 16 C -0.319 4.319 17 C -0.041 4.041 18 C -0.142 4.142 19 N -0.101 5.101 20 C 0.141 3.859 21 C -0.572 4.572 22 H 0.083 0.917 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.207 1.207 29 N -0.155 5.155 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.227 0.773 42 H 0.240 0.760 43 H 0.178 0.822 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.089 -11.112 23.412 26.621 hybrid contribution 1.249 -0.486 -0.011 1.340 sum -4.840 -11.598 23.401 26.562 Atomic orbital electron populations 1.21750 0.93641 1.02243 1.03347 1.22512 0.95782 0.83729 0.99888 1.87978 1.20079 1.26409 1.94884 1.23207 0.81665 0.97421 0.95677 0.91059 1.22911 0.97331 1.01400 0.96340 1.22298 0.96559 0.98467 0.98726 1.22555 0.98133 0.99580 0.97006 1.21448 0.97478 0.96476 0.78804 0.87574 1.45157 1.72613 1.13408 1.08312 1.15609 0.78635 0.84682 0.79721 1.90874 1.52049 1.20528 1.80324 1.41396 1.68946 1.13206 1.05859 1.18658 1.01368 0.88922 0.88140 1.21236 1.18754 0.92806 0.99154 1.21055 0.99352 0.94108 0.89583 1.20326 1.01873 0.89283 1.02684 1.48950 1.46646 1.04641 1.09902 1.19672 0.97960 0.98180 0.70097 1.21371 0.96386 1.45406 0.94022 0.91723 1.24935 0.98412 0.95146 0.95390 1.69930 1.35787 1.47880 0.99441 0.86306 0.83664 0.78375 0.78375 1.19597 1.20691 1.20659 1.77238 1.28317 1.05813 1.04160 0.91809 0.91665 0.91138 0.93391 0.93455 0.89963 0.91125 0.90996 0.91394 0.90640 0.90397 0.77251 0.76050 0.82222 0.90475 0.90917 0.90835 0.93071 0.92807 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.40 6.49 37.16 0.24 0.64 16 3 O -0.37 -3.56 10.06 -35.23 -0.35 -3.91 16 4 C 0.08 0.61 3.05 -25.07 -0.08 0.54 16 5 H 0.07 0.44 7.41 -51.93 -0.38 0.06 16 6 C -0.14 -0.90 6.62 -24.73 -0.16 -1.06 16 7 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 8 C -0.13 -1.17 6.59 -25.62 -0.17 -1.34 16 9 C 0.16 1.62 3.00 -66.81 -0.20 1.42 16 10 H 0.11 1.35 7.49 -51.93 -0.39 0.96 16 11 N -0.74 -7.79 4.99 -57.58 -0.29 -8.08 16 12 C 0.71 10.89 8.53 -86.92 -0.74 10.15 16 13 O -0.56 -10.56 13.12 5.28 0.07 -10.49 16 14 N -0.64 -10.32 5.46 -15.51 -0.08 -10.41 16 15 C 0.28 5.92 8.11 -154.37 -1.25 4.66 16 16 C -0.29 -6.14 9.52 -39.83 -0.38 -6.52 16 17 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 18 C -0.08 -1.47 10.11 36.00 0.36 -1.10 16 19 N -0.32 -7.72 3.59 -58.33 -0.21 -7.93 16 20 C 0.26 6.73 5.99 -5.19 -0.03 6.70 16 21 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 22 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 25 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 N -0.32 -7.64 12.59 31.44 0.40 -7.24 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.31 8.11 -51.93 -0.42 -0.11 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 40 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.39 2.95 8.37 -40.82 -0.34 2.61 16 42 H 0.41 5.17 8.84 -40.82 -0.36 4.81 16 43 H 0.16 3.36 5.91 -52.48 -0.31 3.05 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 49 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -33.66 402.83 -9.84 -43.50 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.97 Total: 6.34 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -3.19 Total: 0.42 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.55 Total: -58.18 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.29 Total: -14.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.66 -9.84 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455115708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.306 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds