Wall clock time and date at job start Sat Apr 11 2020 04:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42888 * 109.47576 * 2 1 4 4 C 1.42902 * 114.00135 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.42966 * 27.46466 * 4 3 2 6 6 C 1.54891 * 110.59924 * 264.84307 * 4 3 2 7 7 C 1.54899 * 102.74611 * 203.32172 * 6 4 3 8 8 C 1.54266 * 104.19319 * 37.94376 * 7 6 4 9 9 C 1.53869 * 106.60080 * 336.39001 * 8 7 6 10 10 H 1.09001 * 110.03290 * 119.28917 * 9 8 7 11 11 N 1.46508 * 110.03177 * 240.71362 * 9 8 7 12 12 C 1.34777 * 120.00036 * 272.17115 * 11 9 8 13 13 O 1.21596 * 120.00074 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99898 * 179.97438 * 12 11 9 15 15 C 1.40199 * 120.00021 * 179.97438 * 14 12 11 16 16 C 1.40399 * 125.96883 * 0.02562 * 15 14 12 17 17 C 1.35249 * 107.86504 * 179.97438 * 16 15 14 18 18 C 1.50696 * 126.07013 * 179.97438 * 17 16 15 19 19 N 1.34961 * 107.85754 * 0.02562 * 17 16 15 20 20 C 1.46501 * 125.97671 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47202 * 89.99582 * 20 19 17 22 22 H 1.08001 * 119.99949 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00119 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99808 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00039 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47151 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46832 * 120.00230 * 25 23 21 28 28 H 1.48493 * 109.46988 * 239.99957 * 25 23 21 29 29 N 1.31199 * 125.97117 * 179.69004 * 15 14 12 30 30 H 1.09005 * 109.46698 * 299.99913 * 1 2 3 31 31 H 1.09004 * 109.47133 * 59.99392 * 1 2 3 32 32 H 1.08993 * 109.47631 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46698 * 240.00087 * 2 1 3 34 34 H 1.08997 * 109.46867 * 120.00853 * 2 1 3 35 35 H 1.08997 * 110.75776 * 321.63810 * 6 4 3 36 36 H 1.08994 * 110.75338 * 85.01097 * 6 4 3 37 37 H 1.08998 * 110.47995 * 156.61949 * 7 6 4 38 38 H 1.08993 * 110.48304 * 279.13227 * 7 6 4 39 39 H 1.08999 * 110.03333 * 217.10101 * 8 7 6 40 40 H 1.09009 * 110.02965 * 95.67370 * 8 7 6 41 41 H 0.97000 * 119.99349 * 92.16390 * 11 9 8 42 42 H 0.97000 * 119.99794 * 359.97438 * 14 12 11 43 43 H 1.08004 * 126.06940 * 359.97438 * 16 15 14 44 44 H 1.09000 * 109.47163 * 89.97562 * 18 17 16 45 45 H 1.09002 * 109.47341 * 209.97433 * 18 17 16 46 46 H 1.09006 * 109.47225 * 329.97483 * 18 17 16 47 47 H 1.09000 * 109.47519 * 209.99759 * 20 19 17 48 48 H 1.09001 * 109.47022 * 330.00164 * 20 19 17 49 49 H 0.96996 * 120.00031 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4599 0.0006 5 1 3.8820 0.5864 -0.4702 6 6 3.9634 1.6330 1.4448 7 6 5.3321 2.3237 1.2240 8 6 5.0795 3.2992 0.0559 9 6 3.8708 2.7500 -0.7219 10 1 3.0594 3.4778 -0.7135 11 7 4.2582 2.4454 -2.1016 12 6 4.1908 3.4031 -3.0476 13 8 3.8080 4.5198 -2.7560 14 7 4.5476 3.1230 -4.3166 15 6 4.4770 4.1190 -5.3008 16 6 4.0555 5.4438 -5.1045 17 6 4.1319 6.0839 -6.2934 18 6 3.7751 7.5255 -6.5495 19 7 4.5832 5.2021 -7.2100 20 6 4.8141 5.4791 -8.6300 21 6 6.2305 5.9554 -8.8251 22 1 6.8926 6.0426 -7.9763 23 6 6.6812 6.2798 -10.0871 24 7 5.8747 6.1740 -11.1206 25 14 8.4370 6.8694 -10.3290 26 1 9.1336 6.9011 -9.0180 27 1 9.1484 5.9429 -11.2459 28 1 8.4247 8.2336 -10.9155 29 7 4.7991 3.9777 -6.5647 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.2986 2.2704 2.0277 36 1 4.0929 0.6644 1.9274 37 1 5.6327 2.8693 2.1184 38 1 6.0906 1.5893 0.9531 39 1 5.9543 3.3391 -0.5931 40 1 4.8547 4.2936 0.4419 41 1 4.5632 1.5545 -2.3342 42 1 4.8533 2.2322 -4.5491 43 1 3.7284 5.8752 -4.1700 44 1 4.6558 8.1499 -6.3997 45 1 3.4216 7.6358 -7.5747 46 1 2.9896 7.8335 -5.8593 47 1 4.6538 4.5693 -9.2084 48 1 4.1218 6.2506 -8.9669 49 1 6.1918 6.4018 -12.0085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455115708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:47:40 Heat of formation + Delta-G solvation = -28.007795 kcal Electronic energy + Delta-G solvation = -28832.931275 eV Core-core repulsion = 24795.670215 eV Total energy + Delta-G solvation = -4037.261060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.32819 -41.23168 -39.82421 -37.47354 -36.26697 -35.34567 -34.70129 -32.92014 -32.56968 -32.08866 -29.05148 -28.58401 -28.00379 -27.80110 -25.04122 -23.74198 -23.22364 -22.08307 -21.33299 -21.23768 -20.92602 -19.19120 -18.77596 -18.08848 -17.72920 -17.33280 -16.72490 -16.66048 -16.45048 -16.17400 -15.81072 -15.72652 -15.43691 -14.82710 -14.55188 -14.42211 -14.31078 -13.93299 -13.79933 -13.70830 -13.62165 -13.53271 -13.15153 -12.95878 -12.87512 -12.83649 -12.67401 -12.36794 -12.26118 -12.11672 -12.06730 -12.00193 -11.65390 -11.55131 -11.48453 -11.34776 -11.14610 -10.73292 -10.60897 -10.10995 -9.56100 -9.07859 -8.32212 -6.49851 1.01400 1.09741 1.37032 1.38517 1.51457 1.66280 2.05789 2.35223 2.38345 2.67310 2.97044 3.11507 3.48759 3.72520 3.86692 3.94933 4.17208 4.18051 4.20730 4.29078 4.43495 4.47256 4.49504 4.51665 4.54787 4.64134 4.72388 4.77939 4.84028 4.90029 4.93607 5.00544 5.02069 5.03640 5.04720 5.15399 5.17772 5.20594 5.23771 5.28024 5.37166 5.54278 5.54988 5.81604 5.85120 5.97312 6.27555 6.32781 6.62092 6.74046 7.12667 7.20976 7.42205 8.73727 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002119 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.623723 B =13208.645638 C =13697.158565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.401 6.401 4 C 0.082 3.918 5 H 0.094 0.906 6 C -0.135 4.135 7 C -0.114 4.114 8 C -0.132 4.132 9 C 0.159 3.841 10 H 0.073 0.927 11 N -0.715 5.715 12 C 0.712 3.288 13 O -0.599 6.599 14 N -0.635 5.635 15 C 0.292 3.708 16 C -0.298 4.298 17 C 0.087 3.913 18 C -0.081 4.081 19 N -0.344 5.344 20 C 0.275 3.725 21 C -0.551 4.551 22 H 0.049 0.951 23 C 0.022 3.978 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.274 1.274 27 H -0.274 1.274 28 H -0.267 1.267 29 N -0.359 5.359 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.412 0.588 42 H 0.421 0.579 43 H 0.164 0.836 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.052 0.948 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 -12.613 26.065 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.321 6.321 4 C 0.024 3.976 5 H 0.111 0.889 6 C -0.173 4.173 7 C -0.151 4.151 8 C -0.171 4.171 9 C 0.054 3.946 10 H 0.092 0.908 11 N -0.372 5.372 12 C 0.412 3.588 13 O -0.476 6.476 14 N -0.287 5.287 15 C 0.037 3.963 16 C -0.329 4.329 17 C -0.043 4.043 18 C -0.139 4.139 19 N -0.126 5.126 20 C 0.156 3.844 21 C -0.589 4.589 22 H 0.067 0.933 23 C -0.179 4.179 24 N -0.557 5.557 25 Si 0.796 3.204 26 H -0.199 1.199 27 H -0.199 1.199 28 H -0.192 1.192 29 N -0.190 5.190 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.258 0.742 43 H 0.182 0.818 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.120 -12.234 25.154 28.436 hybrid contribution 0.863 -0.207 -0.430 0.986 sum -4.257 -12.441 24.725 28.004 Atomic orbital electron populations 1.21780 0.93687 1.03221 1.02349 1.22692 0.95865 0.82801 1.01094 1.87957 1.20977 1.28112 1.95076 1.23251 0.81287 0.96658 0.96425 0.88857 1.22884 0.96830 1.02370 0.95218 1.22271 0.96991 0.98085 0.97776 1.22501 0.96995 0.99878 0.97775 1.21567 0.97155 0.97465 0.78419 0.90834 1.45009 1.71157 1.13297 1.07727 1.15791 0.78258 0.84968 0.79804 1.90843 1.53607 1.22382 1.80818 1.41367 1.68924 1.13077 1.05336 1.18941 0.99338 0.89886 0.88130 1.21390 1.19202 0.93181 0.99140 1.21727 0.97993 0.95449 0.89162 1.20463 1.03130 0.86966 1.03382 1.48767 1.48598 1.05646 1.09605 1.19250 0.97249 0.96602 0.71273 1.21459 0.97078 1.46392 0.93972 0.93314 1.25742 1.02469 0.94854 0.94859 1.70009 1.37606 1.48063 0.99975 0.85294 0.78509 0.78472 0.78107 1.19895 1.19919 1.19208 1.77159 1.30322 1.06149 1.05328 0.92157 0.93300 0.89188 0.92700 0.91595 0.90808 0.88915 0.90094 0.89871 0.91522 0.91555 0.75051 0.74169 0.81823 0.89792 0.91206 0.87701 0.95729 0.92992 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.62 6.49 71.98 0.47 1.09 16 3 O -0.40 -7.13 10.06 -148.98 -1.50 -8.63 16 4 C 0.08 1.11 3.05 31.67 0.10 1.20 16 5 H 0.09 0.85 7.41 -2.39 -0.02 0.83 16 6 C -0.13 -1.36 6.62 31.89 0.21 -1.15 16 7 C -0.11 -1.14 6.83 31.67 0.22 -0.93 16 8 C -0.13 -2.21 6.59 31.32 0.21 -2.00 16 9 C 0.16 3.05 3.00 45.71 0.14 3.19 16 10 H 0.07 1.93 7.49 -2.39 -0.02 1.92 16 11 N -0.72 -14.30 4.99 -454.33 -2.27 -16.56 16 12 C 0.71 21.50 8.53 179.06 1.53 23.03 16 13 O -0.60 -22.73 13.12 -4.02 -0.05 -22.78 16 14 N -0.64 -20.12 5.46 -321.24 -1.75 -21.87 16 15 C 0.29 12.34 8.11 133.31 1.08 13.43 16 16 C -0.30 -12.80 9.52 22.11 0.21 -12.59 16 17 C 0.09 3.81 6.92 41.39 0.29 4.09 16 18 C -0.08 -2.83 10.11 71.23 0.72 -2.11 16 19 N -0.34 -17.08 3.59 -338.44 -1.22 -18.30 16 20 C 0.28 14.80 5.99 85.63 0.51 15.31 16 21 C -0.55 -31.29 9.39 25.60 0.24 -31.05 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 23 C 0.02 1.19 5.46 84.66 0.46 1.65 16 24 N -0.92 -52.23 13.29 21.45 0.28 -51.95 16 25 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 N -0.36 -17.27 12.59 -54.44 -0.69 -17.96 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.57 8.11 -2.38 -0.02 0.55 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 1.23 7.92 -2.39 -0.02 1.21 16 40 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.41 5.28 8.37 -92.71 -0.78 4.50 16 42 H 0.42 10.35 8.84 -92.71 -0.82 9.54 16 43 H 0.16 6.92 5.91 -2.91 -0.02 6.91 16 44 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.07 2.46 7.07 -2.39 -0.02 2.44 16 46 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 47 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 2.77 7.04 -2.39 -0.02 2.75 16 49 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -74.29 402.83 1.33 -72.96 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.63 Total: 27.50 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 7.12 Total: 12.10 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.63 Total: -126.64 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.55 Total: -31.41 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -74.29 1.33 -72.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455115708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.950 kcal (2) G-P(sol) polarization free energy of solvation -74.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds