Wall clock time and date at job start Sat Apr 11 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46894 * 111.00292 * 2 1 4 4 C 1.46905 * 110.99835 * 123.95522 * 2 1 3 5 5 C 1.50702 * 109.47053 * 169.99356 * 4 2 1 6 6 C 1.35313 * 126.65998 * 89.99742 * 5 4 2 7 7 C 1.42277 * 103.92181 * 179.97438 * 6 5 4 8 8 C 1.48326 * 126.94228 * 180.02562 * 7 6 5 9 9 O 1.21499 * 119.99976 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99902 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99511 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.32870 * 35.00355 * 11 10 8 13 13 C 1.47098 * 109.32459 * 154.65129 * 11 10 8 14 14 C 1.52568 * 114.32497 * 183.05608 * 13 11 10 15 15 C 1.50879 * 109.35734 * 274.98547 * 14 13 11 16 16 C 1.53949 * 110.09387 * 91.89151 * 15 14 13 17 17 N 1.47600 * 112.14169 * 319.43349 * 16 15 14 18 18 C 1.36940 * 118.64383 * 137.86997 * 17 16 15 19 19 H 1.07997 * 119.99797 * 206.50633 * 18 17 16 20 20 C 1.38809 * 119.99978 * 26.49810 * 18 17 16 21 21 N 1.31620 * 119.99827 * 15.68976 * 20 18 17 22 22 Si 1.86803 * 120.00156 * 195.68596 * 20 18 17 23 23 H 1.48495 * 109.46804 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47250 * 120.00464 * 22 20 18 25 25 H 1.48501 * 109.47132 * 240.00479 * 22 20 18 26 26 C 1.44657 * 122.54261 * 317.85971 * 17 16 15 27 27 N 1.30994 * 106.11723 * 0.02562 * 7 6 5 28 28 O 1.20896 * 111.44423 * 359.97438 * 27 7 6 29 29 H 1.09000 * 109.46795 * 296.04967 * 1 2 3 30 30 H 1.09002 * 109.47403 * 56.04282 * 1 2 3 31 31 H 1.08998 * 109.47835 * 176.05024 * 1 2 3 32 32 H 1.09005 * 109.46930 * 183.95499 * 3 2 1 33 33 H 1.09003 * 109.47225 * 303.95288 * 3 2 1 34 34 H 1.09000 * 109.47279 * 63.95750 * 3 2 1 35 35 H 1.09005 * 109.47210 * 49.99837 * 4 2 1 36 36 H 1.08994 * 109.47119 * 289.99714 * 4 2 1 37 37 H 1.07999 * 128.04405 * 0.02562 * 6 5 4 38 38 H 0.96993 * 119.99948 * 359.97438 * 10 8 7 39 39 H 1.08995 * 108.51709 * 304.31225 * 13 11 10 40 40 H 1.09005 * 108.51114 * 61.96388 * 13 11 10 41 41 H 1.09002 * 109.48867 * 34.95403 * 14 13 11 42 42 H 1.09000 * 109.49108 * 155.02174 * 14 13 11 43 43 H 1.09002 * 109.36522 * 212.08241 * 15 14 13 44 44 H 1.08995 * 109.36905 * 331.82741 * 15 14 13 45 45 H 1.08996 * 108.94761 * 80.12275 * 16 15 14 46 46 H 1.09003 * 108.94350 * 198.74795 * 16 15 14 47 47 H 0.97004 * 120.00194 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.62020 * 330.84242 * 26 17 16 49 49 H 1.09004 * 109.32855 * 210.89418 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9527 0.9728 6 6 4.4546 -0.1283 1.4254 7 6 5.6596 -0.7595 1.0084 8 6 7.0438 -0.2808 1.2422 9 8 7.2342 0.7549 1.8482 10 7 8.0905 -0.9948 0.7825 11 6 9.4577 -0.5216 1.0130 12 1 9.5111 -0.0328 1.9858 13 6 10.3794 -1.6678 0.9929 14 6 11.8317 -1.3117 1.2954 15 6 12.5115 -0.8626 0.0255 16 6 12.3991 0.6657 -0.1225 17 7 11.0686 1.1666 0.2743 18 6 10.9943 2.3141 1.0180 19 1 10.1495 2.4812 1.6698 20 6 12.0046 3.2622 0.9342 21 7 12.8636 3.2222 -0.0622 22 14 12.1452 4.5949 2.2356 23 1 11.0669 4.4201 3.2415 24 1 13.4669 4.4956 2.9051 25 1 12.0138 5.9282 1.5950 26 6 9.8423 0.4927 -0.0923 27 7 5.2995 -1.8489 0.3762 28 8 4.0967 -1.9674 0.3497 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3635 -1.0252 -0.0708 32 1 3.0828 1.3431 -0.0709 33 1 1.5899 1.9163 -0.8525 34 1 1.7045 1.8723 0.9233 35 1 1.5089 -1.7407 1.1756 36 1 1.7975 -0.2248 2.0628 37 1 4.3426 0.7940 1.9761 38 1 7.9385 -1.8218 0.2990 39 1 10.0412 -2.3969 1.7292 40 1 10.3368 -2.1289 0.0061 41 1 11.8634 -0.5065 2.0294 42 1 12.3456 -2.1870 1.6929 43 1 13.5635 -1.1461 0.0589 44 1 12.0347 -1.3426 -0.8290 45 1 13.1563 1.1384 0.5029 46 1 12.5830 0.9349 -1.1626 47 1 13.5695 3.8849 -0.1210 48 1 9.9824 -0.0346 -1.0359 49 1 9.0455 1.2283 -0.2029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034283821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:58 Heat of formation + Delta-G solvation = 61.184618 kcal Electronic energy + Delta-G solvation = -29645.999603 eV Core-core repulsion = 25612.606217 eV Total energy + Delta-G solvation = -4033.393386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -45.20105 -39.64728 -38.03062 -37.66366 -34.62434 -34.06492 -33.25694 -32.58135 -30.89711 -30.04745 -28.05091 -27.75165 -26.13874 -25.05271 -23.96295 -23.07475 -22.93305 -22.17477 -20.22156 -19.77457 -19.13430 -17.97061 -17.76426 -16.78113 -16.56795 -16.02598 -15.75038 -15.72253 -15.25917 -15.02985 -14.59419 -14.27359 -14.07456 -13.77571 -13.57078 -13.44774 -13.15079 -12.86613 -12.65419 -12.51767 -12.32371 -12.23995 -12.10202 -12.03989 -11.60309 -11.56674 -11.04191 -10.92953 -10.78054 -10.57001 -10.47779 -10.13158 -10.10851 -9.92939 -9.78767 -9.71463 -9.60972 -9.56032 -8.89987 -8.86558 -8.30707 -6.61743 -5.72225 -3.15733 1.02108 1.51847 2.70049 3.11598 3.33930 3.42452 3.50345 3.54488 3.55566 3.93067 4.30981 4.57329 4.58579 4.69754 4.81711 4.91259 4.94965 5.14074 5.18873 5.22927 5.26155 5.29465 5.36989 5.42342 5.46955 5.54719 5.62118 5.68971 5.75905 5.99565 6.03681 6.16205 6.30658 6.38846 6.40138 6.45589 6.60765 6.62952 6.66959 6.73971 6.83896 6.94029 7.09721 7.47741 7.63225 7.75453 7.93520 7.94638 8.35277 8.54012 9.30623 9.95486 10.39759 11.35495 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002707 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.173048 B =10340.674600 C =11661.437422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.014 3.986 4 C 0.134 3.866 5 C -0.028 4.028 6 C -0.175 4.175 7 C -0.017 4.017 8 C 0.590 3.410 9 O -0.511 6.511 10 N -0.705 5.705 11 C 0.114 3.886 12 H 0.091 0.909 13 C -0.113 4.113 14 C -0.100 4.100 15 C -0.144 4.144 16 C 0.176 3.824 17 N -0.583 5.583 18 C -0.254 4.254 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.906 5.906 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.157 3.843 27 N -0.332 5.332 28 O 0.129 5.871 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.179 0.821 38 H 0.398 0.602 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.025 0.975 47 H 0.252 0.748 48 H 0.033 0.967 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.181 -11.659 1.345 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.134 4.134 4 C 0.005 3.995 5 C -0.092 4.092 6 C -0.198 4.198 7 C -0.177 4.177 8 C 0.372 3.628 9 O -0.384 6.384 10 N -0.356 5.356 11 C 0.008 3.992 12 H 0.109 0.891 13 C -0.151 4.151 14 C -0.138 4.138 15 C -0.183 4.183 16 C 0.051 3.949 17 N -0.304 5.304 18 C -0.384 4.384 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.551 5.551 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.027 3.973 27 N -0.033 5.033 28 O 0.053 5.947 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.196 0.804 38 H 0.232 0.768 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.952 -11.959 0.709 23.273 hybrid contribution -0.414 1.383 1.462 2.054 sum -20.366 -10.577 2.170 23.051 Atomic orbital electron populations 1.22406 0.85951 1.02785 1.01097 1.61913 1.08508 1.14721 1.41824 1.22559 1.01838 0.87885 1.01098 1.20497 0.85106 1.00665 0.93191 1.24129 0.96907 0.89691 0.98475 1.22469 0.89253 1.02786 1.05271 1.23701 0.97578 0.94084 1.02289 1.16861 0.81784 0.84120 0.80004 1.90867 1.84437 1.22567 1.40542 1.46065 1.06578 1.26124 1.56841 1.21387 0.77614 0.96328 1.03894 0.89099 1.20588 0.96311 0.97180 1.01045 1.20825 0.93097 1.00510 0.99366 1.22086 0.99073 1.00635 0.96500 1.21063 0.87347 0.87460 0.99046 1.43617 0.99291 1.25458 1.62035 1.19353 1.07167 0.94867 1.17008 0.91220 1.25021 0.99658 0.97416 0.97345 1.70091 1.19153 1.36569 1.29254 0.86251 0.77530 0.81641 0.81628 1.20110 1.21652 1.21791 1.20928 0.90174 0.93406 0.92756 1.74166 0.93111 1.18884 1.17112 1.84771 1.13331 1.40330 1.56282 0.95179 0.90747 0.90875 0.90706 0.90767 0.94938 0.87955 0.90802 0.80398 0.76818 0.93318 0.92679 0.90410 0.93297 0.92840 0.93657 0.90589 0.95710 0.93832 0.94861 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.57 60.06 0.57 0.70 16 2 N -0.54 -3.98 5.01 -252.72 -1.27 -5.24 16 3 C 0.01 0.11 9.29 60.06 0.56 0.66 16 4 C 0.13 0.87 5.52 -4.97 -0.03 0.84 16 5 C -0.03 -0.28 6.34 -35.35 -0.22 -0.50 16 6 C -0.17 -2.06 9.58 -39.07 -0.37 -2.43 16 7 C -0.02 -0.25 7.19 -82.52 -0.59 -0.84 16 8 C 0.59 10.36 7.80 -12.11 -0.09 10.26 16 9 O -0.51 -10.88 16.61 5.37 0.09 -10.79 16 10 N -0.71 -11.50 5.06 -56.41 -0.29 -11.79 16 11 C 0.11 2.12 2.34 -69.78 -0.16 1.96 16 12 H 0.09 1.99 7.57 -51.93 -0.39 1.59 16 13 C -0.11 -1.83 4.55 -29.78 -0.14 -1.96 16 14 C -0.10 -1.73 5.51 -28.02 -0.15 -1.88 16 15 C -0.14 -2.68 5.70 -27.30 -0.16 -2.83 16 16 C 0.18 4.19 4.66 -2.94 -0.01 4.17 16 17 N -0.58 -14.68 2.27 -172.03 -0.39 -15.07 16 18 C -0.25 -7.15 9.45 -15.06 -0.14 -7.29 16 19 H 0.07 2.03 7.88 -52.49 -0.41 1.61 16 20 C 0.00 0.10 4.87 -17.43 -0.08 0.02 16 21 N -0.91 -26.57 11.01 55.49 0.61 -25.96 16 22 Si 0.90 22.44 29.58 -169.99 -5.03 17.42 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.16 3.45 5.24 -4.04 -0.02 3.43 16 27 N -0.33 -4.49 11.84 33.30 0.39 -4.10 16 28 O 0.13 1.50 11.18 17.24 0.19 1.69 16 29 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.07 0.29 8.12 -51.93 -0.42 -0.14 16 32 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 33 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.10 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 37 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.40 5.55 8.34 -40.82 -0.34 5.21 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.83 7.34 -51.93 -0.38 0.44 16 41 H 0.08 1.57 7.48 -51.93 -0.39 1.18 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.79 7.31 -51.93 -0.38 0.41 16 45 H 0.08 2.01 6.33 -51.93 -0.33 1.69 16 46 H 0.02 0.64 8.03 -51.93 -0.42 0.23 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 49 H 0.05 1.17 7.97 -51.93 -0.41 0.76 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -32.49 391.76 -8.81 -41.30 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.98 Total: 2.34 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.05 Total: 4.30 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.94 Total: -62.16 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.28 Total: -9.10 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.49 -8.81 -41.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034283821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.485 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds