Wall clock time and date at job start Sat Apr 11 2020 04:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47060 * 125.40581 * 2 1 4 4 C 1.54104 * 103.86266 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.54892 * 241.25662 * 4 3 2 6 6 C 1.50704 * 110.54882 * 118.59050 * 4 3 2 7 7 O 1.21280 * 119.99904 * 259.99655 * 6 4 3 8 8 N 1.34776 * 119.99739 * 80.00540 * 6 4 3 9 9 C 1.48162 * 127.02971 * 359.96347 * 8 6 4 10 10 C 1.55041 * 103.31354 * 141.00229 * 9 8 6 11 11 C 1.54150 * 102.73554 * 36.99077 * 10 9 8 12 12 C 1.47611 * 127.02580 * 180.02562 * 8 6 4 13 13 C 1.52499 * 110.06310 * 97.48606 * 11 10 9 14 14 C 1.53127 * 109.60253 * 181.75687 * 13 11 10 15 15 C 1.53182 * 109.29516 * 299.49295 * 14 13 11 16 16 N 1.46935 * 108.89689 * 55.05653 * 15 14 13 17 17 C 1.36943 * 120.68275 * 125.70839 * 16 15 14 18 18 H 1.08002 * 119.99879 * 332.14843 * 17 16 15 19 19 C 1.38810 * 120.00024 * 152.14935 * 17 16 15 20 20 N 1.31621 * 119.99790 * 343.30036 * 19 17 16 21 21 Si 1.86798 * 120.00174 * 163.30191 * 19 17 16 22 22 H 1.48504 * 109.46880 * 89.99557 * 21 19 17 23 23 H 1.48500 * 109.47238 * 209.99835 * 21 19 17 24 24 H 1.48501 * 109.46989 * 330.00045 * 21 19 17 25 25 C 1.47035 * 118.63571 * 305.98287 * 16 15 14 26 26 N 1.47053 * 103.86082 * 359.97438 * 4 3 2 27 27 C 1.33942 * 125.41609 * 179.97438 * 2 1 3 28 28 O 1.21585 * 123.04225 * 0.02621 * 27 2 1 29 29 H 1.09001 * 109.47420 * 90.00471 * 1 2 3 30 30 H 1.09005 * 109.46979 * 210.00437 * 1 2 3 31 31 H 1.09001 * 109.47371 * 329.99700 * 1 2 3 32 32 H 1.09001 * 110.55049 * 61.40311 * 3 2 1 33 33 H 1.09006 * 110.66816 * 298.64969 * 3 2 1 34 34 H 1.09002 * 110.65494 * 259.46102 * 9 8 6 35 35 H 1.09004 * 110.64568 * 22.38537 * 9 8 6 36 36 H 1.08999 * 110.76232 * 278.67733 * 10 9 8 37 37 H 1.09004 * 110.76224 * 155.30287 * 10 9 8 38 38 H 1.08997 * 109.97476 * 85.97940 * 12 8 6 39 39 H 1.09004 * 109.96984 * 324.70923 * 12 8 6 40 40 H 1.08993 * 109.45178 * 61.71147 * 13 11 10 41 41 H 1.09006 * 109.42367 * 301.77842 * 13 11 10 42 42 H 1.08996 * 109.50209 * 179.54787 * 14 13 11 43 43 H 1.09004 * 109.52708 * 59.45777 * 14 13 11 44 44 H 1.08993 * 109.56665 * 295.23403 * 15 14 13 45 45 H 1.09004 * 109.66234 * 174.93457 * 15 14 13 46 46 H 0.97000 * 120.00066 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58910 * 172.59089 * 25 16 15 48 48 H 1.08995 * 109.58807 * 293.01306 * 25 16 15 49 49 H 0.96999 * 125.40621 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3169 1.1986 0.0000 4 6 3.7503 0.6328 -0.0007 5 1 4.2867 0.9486 0.8941 6 6 4.4899 1.0670 -1.2399 7 8 4.6014 0.3058 -2.1775 8 7 5.0274 2.3011 -1.3061 9 6 4.9848 3.3502 -0.2608 10 6 6.3955 3.9887 -0.3379 11 6 6.6960 3.9673 -1.8497 12 6 5.7779 2.8843 -2.4355 13 6 6.3747 5.3247 -2.4662 14 6 6.6353 5.2785 -3.9744 15 6 8.1111 4.9521 -4.2234 16 7 8.4471 3.7044 -3.5238 17 6 9.0110 2.6549 -4.1989 18 1 8.8174 2.5245 -5.2534 19 6 9.8314 1.7585 -3.5278 20 7 10.3342 2.0782 -2.3542 21 14 10.2218 0.0985 -4.2903 22 1 11.4459 0.2120 -5.1234 23 1 10.4460 -0.9001 -3.2143 24 1 9.0837 -0.3360 -5.1396 25 6 8.1598 3.6038 -2.0853 26 7 3.5538 -0.8246 -0.0003 27 6 2.2411 -1.0916 0.0005 28 8 1.7947 -2.2225 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 2.1404 1.7935 0.8961 33 1 2.1413 1.7955 -0.8950 34 1 4.2157 4.0885 -0.4881 35 1 4.8133 2.9081 0.7207 36 1 7.1220 3.3877 0.2089 37 1 6.3777 5.0117 0.0380 38 1 5.0869 3.3291 -3.1517 39 1 6.3751 2.1138 -2.9231 40 1 7.0062 6.0882 -2.0119 41 1 5.3271 5.5658 -2.2861 42 1 6.3976 6.2469 -4.4145 43 1 6.0108 4.5092 -4.4287 44 1 8.7332 5.7624 -3.8436 45 1 8.2842 4.8291 -5.2925 46 1 10.9072 1.4517 -1.8851 47 1 8.3419 2.5838 -1.7468 48 1 8.8005 4.2933 -1.5356 49 1 4.2621 -1.4872 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040327445.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:50:32 Heat of formation + Delta-G solvation = -11.599075 kcal Electronic energy + Delta-G solvation = -31049.051879 eV Core-core repulsion = 27012.502355 eV Total energy + Delta-G solvation = -4036.549524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50156 -39.98856 -38.32963 -36.30504 -35.86353 -34.26276 -33.15524 -31.67156 -30.02220 -29.68487 -28.95798 -27.56289 -25.76572 -25.32103 -23.81710 -22.99005 -22.24783 -20.73419 -20.46828 -19.59588 -18.23104 -17.86866 -17.44207 -16.66253 -16.41608 -16.07994 -15.67850 -15.11353 -14.88143 -14.55993 -14.23147 -14.09279 -13.93107 -13.86662 -13.63424 -13.38695 -13.22726 -12.96948 -12.76213 -12.62647 -12.40229 -12.30807 -12.18497 -11.97326 -11.65847 -11.23852 -11.00913 -10.96007 -10.67039 -10.44834 -10.40164 -10.35063 -10.19915 -10.14152 -9.86442 -9.57330 -9.46005 -9.33986 -8.80424 -8.55636 -8.45543 -6.69674 -5.82096 -3.23644 2.27496 2.61515 2.77168 3.14054 3.38814 3.46725 3.51536 3.69038 4.03228 4.25669 4.49106 4.51174 4.69995 4.77496 4.92159 4.97817 5.10220 5.15322 5.27010 5.32130 5.38866 5.43537 5.44212 5.46884 5.58430 5.63419 5.70338 5.93104 5.96714 6.04796 6.13706 6.21116 6.31622 6.34162 6.40481 6.41685 6.65271 6.69299 6.76290 6.82218 6.93964 6.95135 7.24821 7.25548 7.55698 7.64432 7.78710 8.18247 8.41729 8.43728 9.18652 9.81884 10.37741 11.26589 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003774 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.425695 B = 7417.671263 C = 8813.320759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.638 5.638 3 C 0.109 3.891 4 C 0.108 3.892 5 H 0.116 0.884 6 C 0.516 3.484 7 O -0.520 6.520 8 N -0.614 5.614 9 C 0.096 3.904 10 C -0.124 4.124 11 C -0.094 4.094 12 C 0.126 3.874 13 C -0.093 4.093 14 C -0.139 4.139 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.903 5.903 21 Si 0.897 3.103 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.189 3.811 26 N -0.714 5.714 27 C 0.705 3.295 28 O -0.584 6.584 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.253 0.747 47 H 0.089 0.911 48 H 0.021 0.979 49 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.199 7.225 9.495 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.378 5.378 3 C -0.015 4.015 4 C -0.003 4.003 5 H 0.133 0.867 6 C 0.301 3.699 7 O -0.395 6.395 8 N -0.349 5.349 9 C -0.027 4.027 10 C -0.163 4.163 11 C -0.097 4.097 12 C 0.005 3.995 13 C -0.131 4.131 14 C -0.178 4.178 15 C 0.018 3.982 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.727 3.273 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.062 3.938 26 N -0.375 5.375 27 C 0.406 3.594 28 O -0.462 6.462 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.039 0.961 49 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -16.473 6.012 9.057 19.736 hybrid contribution 0.751 -0.833 -0.364 1.179 sum -15.722 5.179 8.693 18.697 Atomic orbital electron populations 1.21383 0.75407 1.03129 1.02011 1.46999 1.06408 1.05595 1.78839 1.22249 0.86371 0.89045 1.03877 1.21807 0.96963 0.83259 0.98271 0.86687 1.20207 0.79978 0.80814 0.88931 1.90788 1.58643 1.51796 1.38235 1.48956 1.54062 1.12463 1.19382 1.22658 0.98822 0.90089 0.91112 1.22730 0.95273 1.01055 0.97226 1.21858 1.00450 0.94372 0.92986 1.22187 0.93269 0.96600 0.87476 1.21376 0.99436 0.95983 0.96271 1.22081 1.00145 0.99969 0.95597 1.20906 0.91695 0.89201 0.96434 1.44048 1.70889 1.11058 1.05326 1.19144 1.22195 1.02504 0.94277 0.91743 1.24983 0.96762 0.99891 0.97582 1.70007 1.34173 1.34890 1.15663 0.86376 0.78258 0.84237 0.78466 1.21382 1.21551 1.20330 1.20759 0.86423 1.01751 0.84834 1.44859 1.06972 1.06287 1.79377 1.15787 0.81672 0.84600 0.77367 1.90956 1.75874 1.20878 1.58447 0.92639 0.90323 0.90851 0.88848 0.89663 0.90905 0.90701 0.90361 0.90312 0.92305 0.88876 0.92244 0.93489 0.93076 0.92276 0.96507 0.92909 0.93695 0.89335 0.96096 0.72199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.98 11.03 59.84 0.66 1.64 16 2 N -0.64 -7.06 3.36 -186.73 -0.63 -7.69 16 3 C 0.11 0.92 7.32 -3.16 -0.02 0.90 16 4 C 0.11 1.16 3.49 -68.20 -0.24 0.92 16 5 H 0.12 0.89 7.10 -51.93 -0.37 0.52 16 6 C 0.52 7.80 7.02 -10.98 -0.08 7.72 16 7 O -0.52 -10.60 16.90 5.56 0.09 -10.51 16 8 N -0.61 -8.59 3.30 -169.81 -0.56 -9.15 16 9 C 0.10 0.93 6.95 -2.05 -0.01 0.91 16 10 C -0.12 -1.50 6.15 -25.05 -0.15 -1.66 16 11 C -0.09 -1.50 0.62 -154.03 -0.09 -1.60 16 12 C 0.13 2.16 5.57 -3.13 -0.02 2.14 16 13 C -0.09 -1.32 4.40 -26.92 -0.12 -1.43 16 14 C -0.14 -2.18 5.87 -26.57 -0.16 -2.34 16 15 C 0.14 2.84 6.50 -3.71 -0.02 2.81 16 16 N -0.59 -13.93 2.76 -172.56 -0.48 -14.41 16 17 C -0.25 -6.75 9.59 -15.06 -0.14 -6.89 16 18 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 19 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 20 N -0.90 -25.53 11.19 55.49 0.62 -24.91 16 21 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.19 4.07 3.60 -3.92 -0.01 4.06 16 26 N -0.71 -9.43 5.60 -59.33 -0.33 -9.77 16 27 C 0.71 10.42 8.60 -88.40 -0.76 9.66 16 28 O -0.58 -10.80 17.53 5.29 0.09 -10.71 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.73 7.72 -51.93 -0.40 0.32 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.50 6.77 -51.93 -0.35 0.15 16 36 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 37 H 0.08 0.79 7.83 -51.93 -0.41 0.38 16 38 H 0.06 0.98 6.55 -51.93 -0.34 0.64 16 39 H 0.09 2.08 7.52 -51.93 -0.39 1.69 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.98 6.65 -51.93 -0.35 0.64 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.09 2.24 6.08 -51.93 -0.32 1.92 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.44 5.63 8.96 -40.82 -0.37 5.26 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -35.77 381.52 -9.60 -45.37 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.87 Total: 1.97 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: -1.26 Total: 16.93 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -1.37 Total: -65.93 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.19 Total: -21.22 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.77 -9.60 -45.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327445.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.772 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds