Wall clock time and date at job start Sat Apr 11 2020 04:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47060 * 125.40581 * 2 1 4 4 C 1.54104 * 103.86266 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.54892 * 241.25662 * 4 3 2 6 6 C 1.50704 * 110.54882 * 118.59050 * 4 3 2 7 7 O 1.21280 * 119.99904 * 259.99655 * 6 4 3 8 8 N 1.34776 * 119.99739 * 80.00540 * 6 4 3 9 9 C 1.48162 * 127.02971 * 359.96347 * 8 6 4 10 10 C 1.55041 * 103.31354 * 141.00229 * 9 8 6 11 11 C 1.54150 * 102.73554 * 36.99077 * 10 9 8 12 12 C 1.47611 * 127.02580 * 180.02562 * 8 6 4 13 13 C 1.52499 * 110.06310 * 97.48606 * 11 10 9 14 14 C 1.53127 * 109.60253 * 181.75687 * 13 11 10 15 15 C 1.53182 * 109.29516 * 299.49295 * 14 13 11 16 16 N 1.46935 * 108.89689 * 55.05653 * 15 14 13 17 17 C 1.36943 * 120.68275 * 125.70839 * 16 15 14 18 18 H 1.08002 * 119.99879 * 332.14843 * 17 16 15 19 19 C 1.38810 * 120.00024 * 152.14935 * 17 16 15 20 20 N 1.31621 * 119.99790 * 343.30036 * 19 17 16 21 21 Si 1.86798 * 120.00174 * 163.30191 * 19 17 16 22 22 H 1.48504 * 109.46880 * 89.99557 * 21 19 17 23 23 H 1.48500 * 109.47238 * 209.99835 * 21 19 17 24 24 H 1.48501 * 109.46989 * 330.00045 * 21 19 17 25 25 C 1.47035 * 118.63571 * 305.98287 * 16 15 14 26 26 N 1.47053 * 103.86082 * 359.97438 * 4 3 2 27 27 C 1.33942 * 125.41609 * 179.97438 * 2 1 3 28 28 O 1.21585 * 123.04225 * 0.02621 * 27 2 1 29 29 H 1.09001 * 109.47420 * 90.00471 * 1 2 3 30 30 H 1.09005 * 109.46979 * 210.00437 * 1 2 3 31 31 H 1.09001 * 109.47371 * 329.99700 * 1 2 3 32 32 H 1.09001 * 110.55049 * 61.40311 * 3 2 1 33 33 H 1.09006 * 110.66816 * 298.64969 * 3 2 1 34 34 H 1.09002 * 110.65494 * 259.46102 * 9 8 6 35 35 H 1.09004 * 110.64568 * 22.38537 * 9 8 6 36 36 H 1.08999 * 110.76232 * 278.67733 * 10 9 8 37 37 H 1.09004 * 110.76224 * 155.30287 * 10 9 8 38 38 H 1.08997 * 109.97476 * 85.97940 * 12 8 6 39 39 H 1.09004 * 109.96984 * 324.70923 * 12 8 6 40 40 H 1.08993 * 109.45178 * 61.71147 * 13 11 10 41 41 H 1.09006 * 109.42367 * 301.77842 * 13 11 10 42 42 H 1.08996 * 109.50209 * 179.54787 * 14 13 11 43 43 H 1.09004 * 109.52708 * 59.45777 * 14 13 11 44 44 H 1.08993 * 109.56665 * 295.23403 * 15 14 13 45 45 H 1.09004 * 109.66234 * 174.93457 * 15 14 13 46 46 H 0.97000 * 120.00066 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58910 * 172.59089 * 25 16 15 48 48 H 1.08995 * 109.58807 * 293.01306 * 25 16 15 49 49 H 0.96999 * 125.40621 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3169 1.1986 0.0000 4 6 3.7503 0.6328 -0.0007 5 1 4.2867 0.9486 0.8941 6 6 4.4899 1.0670 -1.2399 7 8 4.6014 0.3058 -2.1775 8 7 5.0274 2.3011 -1.3061 9 6 4.9848 3.3502 -0.2608 10 6 6.3955 3.9887 -0.3379 11 6 6.6960 3.9673 -1.8497 12 6 5.7779 2.8843 -2.4355 13 6 6.3747 5.3247 -2.4662 14 6 6.6353 5.2785 -3.9744 15 6 8.1111 4.9521 -4.2234 16 7 8.4471 3.7044 -3.5238 17 6 9.0110 2.6549 -4.1989 18 1 8.8174 2.5245 -5.2534 19 6 9.8314 1.7585 -3.5278 20 7 10.3342 2.0782 -2.3542 21 14 10.2218 0.0985 -4.2903 22 1 11.4459 0.2120 -5.1234 23 1 10.4460 -0.9001 -3.2143 24 1 9.0837 -0.3360 -5.1396 25 6 8.1598 3.6038 -2.0853 26 7 3.5538 -0.8246 -0.0003 27 6 2.2411 -1.0916 0.0005 28 8 1.7947 -2.2225 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 2.1404 1.7935 0.8961 33 1 2.1413 1.7955 -0.8950 34 1 4.2157 4.0885 -0.4881 35 1 4.8133 2.9081 0.7207 36 1 7.1220 3.3877 0.2089 37 1 6.3777 5.0117 0.0380 38 1 5.0869 3.3291 -3.1517 39 1 6.3751 2.1138 -2.9231 40 1 7.0062 6.0882 -2.0119 41 1 5.3271 5.5658 -2.2861 42 1 6.3976 6.2469 -4.4145 43 1 6.0108 4.5092 -4.4287 44 1 8.7332 5.7624 -3.8436 45 1 8.2842 4.8291 -5.2925 46 1 10.9072 1.4517 -1.8851 47 1 8.3419 2.5838 -1.7468 48 1 8.8005 4.2933 -1.5356 49 1 4.2621 -1.4872 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040327445.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:50:30 Heat of formation + Delta-G solvation = -39.054686 kcal Electronic energy + Delta-G solvation = -31050.242444 eV Core-core repulsion = 27012.502355 eV Total energy + Delta-G solvation = -4037.740089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.47603 -41.18664 -39.64232 -37.45196 -37.27552 -35.12523 -34.87721 -33.08625 -31.75298 -30.63634 -30.07502 -28.37887 -27.33391 -26.80756 -24.84806 -24.02579 -23.85154 -21.92150 -21.65307 -20.64378 -19.66355 -18.81514 -18.54840 -18.48062 -17.40350 -17.15915 -16.82227 -16.72329 -16.13428 -15.79919 -15.50308 -15.36415 -15.20628 -15.06271 -14.81687 -14.56518 -14.43769 -14.40774 -13.92675 -13.63939 -13.38055 -13.30315 -13.14465 -13.04785 -12.95822 -12.84833 -12.79283 -12.58599 -12.23513 -12.21632 -11.87215 -11.81648 -11.57778 -11.40579 -11.31556 -11.00189 -10.94156 -10.56877 -10.43334 -9.69248 -9.60950 -8.65355 -7.91983 -5.33555 1.31401 1.34548 1.38978 1.46614 1.58387 1.75678 2.08960 2.44351 2.85144 3.21939 3.24166 3.33070 3.63441 3.81874 3.83883 3.89943 4.03256 4.08426 4.33006 4.35824 4.45161 4.48548 4.51515 4.53264 4.67197 4.71182 4.76115 4.83151 4.86726 4.94010 4.98848 5.02822 5.04673 5.15798 5.20010 5.21124 5.25973 5.43786 5.47661 5.54181 5.58611 5.60174 5.71017 5.80207 5.93790 6.31182 6.36845 6.56769 7.05506 7.14232 7.38766 7.87805 8.35614 9.13014 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003774 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.425695 B = 7417.671263 C = 8813.320759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.635 5.635 3 C 0.111 3.889 4 C 0.114 3.886 5 H 0.158 0.842 6 C 0.508 3.492 7 O -0.590 6.590 8 N -0.612 5.612 9 C 0.098 3.902 10 C -0.121 4.121 11 C -0.087 4.087 12 C 0.134 3.866 13 C -0.087 4.087 14 C -0.130 4.130 15 C 0.137 3.863 16 N -0.610 5.610 17 C -0.254 4.254 18 H 0.056 0.944 19 C -0.041 4.041 20 N -0.926 5.926 21 Si 0.945 3.055 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.285 1.285 25 C 0.199 3.801 26 N -0.721 5.721 27 C 0.691 3.309 28 O -0.635 6.635 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.018 0.982 45 H 0.042 0.958 46 H 0.248 0.752 47 H 0.042 0.958 48 H 0.000 1.000 49 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 10.763 11.773 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.374 5.374 3 C -0.012 4.012 4 C 0.005 3.995 5 H 0.175 0.825 6 C 0.295 3.705 7 O -0.470 6.470 8 N -0.344 5.344 9 C -0.023 4.023 10 C -0.160 4.160 11 C -0.090 4.090 12 C 0.011 3.989 13 C -0.124 4.124 14 C -0.169 4.169 15 C 0.012 3.988 16 N -0.333 5.333 17 C -0.385 4.385 18 H 0.073 0.927 19 C -0.236 4.236 20 N -0.573 5.573 21 Si 0.775 3.225 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.211 1.211 25 C 0.073 3.927 26 N -0.380 5.380 27 C 0.392 3.608 28 O -0.517 6.517 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.169 0.831 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -19.447 9.660 11.359 24.505 hybrid contribution 1.723 -1.867 -1.173 2.798 sum -17.724 7.793 10.186 21.877 Atomic orbital electron populations 1.21634 0.73741 1.04682 1.02397 1.47218 1.07447 1.05346 1.77403 1.22618 0.83611 0.88072 1.06859 1.22104 0.98745 0.81740 0.96943 0.82452 1.21147 0.79461 0.80285 0.89568 1.90760 1.61382 1.53776 1.41058 1.49051 1.52662 1.13133 1.19589 1.23073 0.97901 0.89536 0.91746 1.22755 0.96585 1.03202 0.93422 1.21652 0.95628 0.95168 0.96519 1.21839 0.93179 0.95026 0.88807 1.21386 1.02233 0.94403 0.94384 1.21972 0.96180 1.01201 0.97523 1.21100 0.94876 0.87427 0.95446 1.44310 1.70973 1.11804 1.06235 1.19354 1.21332 1.03621 0.94201 0.92675 1.25501 0.97600 1.02248 0.98290 1.70121 1.35198 1.35371 1.16583 0.85610 0.77927 0.81426 0.77579 1.20451 1.22001 1.21050 1.20520 0.90282 0.98511 0.83356 1.44987 1.06582 1.07684 1.78763 1.16169 0.82338 0.84920 0.77422 1.90902 1.76817 1.23180 1.60828 0.92878 0.91614 0.86445 0.83135 0.89198 0.86817 0.86460 0.92456 0.86781 0.91580 0.95600 0.91266 0.89135 0.89667 0.93497 0.96410 0.93974 0.94278 0.93990 0.98218 0.72823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.53 11.03 127.77 1.41 2.94 16 2 N -0.64 -12.29 3.36 -863.43 -2.90 -15.19 16 3 C 0.11 1.31 7.32 86.65 0.63 1.94 16 4 C 0.11 2.10 3.49 44.51 0.16 2.26 16 5 H 0.16 1.58 7.10 -2.39 -0.02 1.57 16 6 C 0.51 14.83 7.02 87.66 0.62 15.44 16 7 O -0.59 -25.17 16.90 -3.03 -0.05 -25.22 16 8 N -0.61 -15.72 3.30 -809.56 -2.67 -18.39 16 9 C 0.10 1.30 6.95 86.76 0.60 1.91 16 10 C -0.12 -2.46 6.15 31.68 0.19 -2.27 16 11 C -0.09 -2.64 0.62 -51.87 -0.03 -2.68 16 12 C 0.13 4.57 5.57 86.36 0.48 5.05 16 13 C -0.09 -2.10 4.40 30.47 0.13 -1.96 16 14 C -0.13 -3.78 5.87 30.70 0.18 -3.60 16 15 C 0.14 5.40 6.50 86.36 0.56 5.96 16 16 N -0.61 -29.90 2.76 -699.84 -1.93 -31.83 16 17 C -0.25 -14.37 9.59 84.03 0.81 -13.56 16 18 H 0.06 3.13 7.88 -2.91 -0.02 3.11 16 19 C -0.04 -2.34 4.92 84.86 0.42 -1.92 16 20 N -0.93 -55.11 11.19 21.65 0.24 -54.87 16 21 Si 0.95 47.88 29.59 68.60 2.03 49.91 16 22 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 24 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 25 C 0.20 8.89 3.60 86.16 0.31 9.20 16 26 N -0.72 -18.68 5.60 -460.35 -2.58 -21.26 16 27 C 0.69 20.10 8.60 179.57 1.54 21.65 16 28 O -0.64 -24.25 17.53 -3.98 -0.07 -24.32 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 1.05 7.91 -2.38 -0.02 1.03 16 31 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.09 1.06 7.72 -2.38 -0.02 1.04 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 0.66 6.77 -2.39 -0.02 0.65 16 36 H 0.06 1.43 7.84 -2.39 -0.02 1.41 16 37 H 0.11 1.59 7.83 -2.38 -0.02 1.57 16 38 H 0.07 2.12 6.55 -2.39 -0.02 2.10 16 39 H 0.03 1.22 7.52 -2.39 -0.02 1.20 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.49 6.65 -2.38 -0.02 1.47 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.04 1.70 7.93 -2.38 -0.02 1.68 16 46 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.04 2.25 6.08 -2.39 -0.01 2.24 16 48 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.43 11.57 8.96 -92.71 -0.83 10.74 16 Total: -1.00 -90.70 381.52 0.22 -90.49 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.13 Total: 10.31 kcal Atomic # 6 Polarization: 32.35 SS G_CDS: 8.01 Total: 40.36 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -9.84 Total: -141.54 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.12 Total: -49.53 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -90.70 0.22 -90.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040327445.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.431 kcal (2) G-P(sol) polarization free energy of solvation -90.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds