Wall clock time and date at job start Sat Apr 11 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99620 * 2 1 4 4 N 1.46499 * 109.47196 * 123.08503 * 3 2 1 5 5 C 1.36741 * 127.14101 * 274.32433 * 4 3 2 6 6 C 1.50705 * 126.34323 * 0.03620 * 5 4 3 7 7 C 1.53002 * 109.46770 * 270.25143 * 6 5 4 8 8 H 1.08998 * 109.47247 * 55.00165 * 7 6 5 9 9 O 1.42897 * 109.46919 * 294.99872 * 7 6 5 10 10 C 1.50705 * 109.47137 * 175.00093 * 7 6 5 11 11 H 1.08004 * 119.99621 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99862 * 179.97438 * 10 7 6 13 13 N 1.31509 * 119.99974 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 119.99463 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46964 * 60.00396 * 14 12 10 16 16 H 1.48499 * 109.46802 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47202 * 299.99949 * 14 12 10 18 18 N 1.30287 * 107.30832 * 180.22666 * 5 4 3 19 19 N 1.28531 * 110.05772 * 359.77011 * 18 5 4 20 20 C 1.31223 * 109.85379 * 0.02562 * 19 18 5 21 21 N 1.38586 * 126.46766 * 179.97438 * 20 19 18 22 22 C 1.46905 * 110.99612 * 105.84577 * 21 20 19 23 23 C 1.46894 * 111.00045 * 341.89301 * 21 20 19 24 24 C 1.52999 * 109.47004 * 288.10001 * 23 21 20 25 25 H 1.08998 * 110.45303 * 53.37508 * 24 23 21 26 26 C 1.54508 * 110.50887 * 175.97376 * 24 23 21 27 27 C 1.54478 * 104.06175 * 118.78666 * 26 24 23 28 28 O 1.44427 * 104.80270 * 23.97738 * 27 26 24 29 29 C 1.44783 * 105.29735 * 319.45585 * 28 27 26 30 30 H 1.08000 * 119.99656 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00123 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.00272 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47696 * 3.08398 * 3 2 1 34 34 H 1.08998 * 109.47092 * 243.08184 * 3 2 1 35 35 H 1.09000 * 109.47061 * 30.24827 * 6 5 4 36 36 H 1.08996 * 109.47065 * 150.25439 * 6 5 4 37 37 H 0.96698 * 114.00266 * 300.00104 * 9 7 6 38 38 H 0.97008 * 119.99476 * 179.97438 * 13 12 10 39 39 H 1.08993 * 109.47011 * 301.90215 * 22 21 20 40 40 H 1.09004 * 109.47340 * 61.90536 * 22 21 20 41 41 H 1.08994 * 109.47078 * 181.90080 * 22 21 20 42 42 H 1.09003 * 109.46750 * 168.10509 * 23 21 20 43 43 H 1.08999 * 109.47456 * 48.10432 * 23 21 20 44 44 H 1.09005 * 110.51390 * 237.43047 * 26 24 23 45 45 H 1.08998 * 110.51542 * 0.02562 * 26 24 23 46 46 H 1.08999 * 110.37535 * 142.80702 * 27 26 24 47 47 H 1.08997 * 110.37170 * 265.14651 * 27 26 24 48 48 H 1.09007 * 110.42182 * 281.77481 * 29 28 27 49 49 H 1.08994 * 110.48870 * 159.32525 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9605 1.3512 1.1573 5 6 2.6516 1.7578 2.4257 6 6 1.3094 2.2483 2.9044 7 6 1.2244 3.7645 2.7179 8 1 1.4330 4.0149 1.6778 9 8 2.1836 4.4028 3.5632 10 6 -0.1593 4.2385 3.0810 11 1 -0.9035 3.5292 3.4120 12 6 -0.4748 5.5777 2.9915 13 7 0.4318 6.4414 2.5898 14 14 -2.1903 6.1650 3.4409 15 1 -2.4752 5.8232 4.8576 16 1 -2.2724 7.6368 3.2612 17 1 -3.1866 5.5021 2.5616 18 7 3.7337 1.6465 3.1428 19 7 4.6967 1.1961 2.4205 20 6 4.2772 0.9948 1.1936 21 7 5.0305 0.5154 0.1337 22 6 4.6791 -0.8774 -0.1744 23 6 6.4677 0.6477 0.4070 24 6 6.8674 2.1226 0.3320 25 1 6.2312 2.7232 0.9821 26 6 8.3538 2.3007 0.7145 27 6 8.9990 2.8989 -0.5553 28 8 7.9098 3.5369 -1.2571 29 6 6.7875 2.6319 -1.1242 30 1 -0.5399 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3564 2.1329 0.0553 34 1 2.6479 1.3872 -0.9163 35 1 0.5198 1.7665 2.3278 36 1 1.1889 2.0047 3.9600 37 1 2.0587 4.2237 4.5052 38 1 0.2097 7.3836 2.5265 39 1 4.8360 -1.4956 0.7095 40 1 3.6323 -0.9304 -0.4738 41 1 5.3083 -1.2395 -0.9874 42 1 7.0319 0.0803 -0.3332 43 1 6.6851 0.2624 1.4031 44 1 8.4524 2.9894 1.5536 45 1 8.8040 1.3380 0.9565 46 1 9.7582 3.6329 -0.2854 47 1 9.4342 2.1092 -1.1677 48 1 6.8843 1.8007 -1.8227 49 1 5.8491 3.1608 -1.2902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340317113.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:11 Heat of formation + Delta-G solvation = 15.376211 kcal Electronic energy + Delta-G solvation = -30563.181235 eV Core-core repulsion = 26527.801447 eV Total energy + Delta-G solvation = -4035.379788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.59770 -39.57080 -37.45657 -36.25762 -35.75928 -32.85032 -32.49794 -32.16019 -31.13393 -29.50971 -28.40387 -26.88641 -26.50319 -25.29761 -24.51739 -22.86331 -21.68563 -21.18714 -20.47063 -19.97889 -19.63545 -17.35780 -16.90890 -16.68131 -16.16778 -16.04533 -15.51336 -15.14235 -15.03471 -14.68781 -14.54058 -14.44032 -14.22944 -13.80866 -13.71619 -13.39084 -13.15487 -12.87034 -12.71158 -12.52669 -12.24893 -12.02675 -11.66536 -11.51885 -11.27479 -11.23940 -11.15389 -11.13171 -10.99647 -10.87433 -10.78699 -10.57822 -10.29718 -10.06091 -9.85158 -9.82780 -9.63761 -9.43521 -9.07349 -8.63596 -8.35559 -7.86608 -6.05615 -4.26190 1.85212 2.16661 2.68088 3.25364 3.31308 3.32042 3.35013 3.71269 3.95396 4.33789 4.54866 4.60909 4.65836 4.74406 4.80823 4.83418 4.96700 5.06933 5.09614 5.14019 5.20395 5.21590 5.28281 5.35877 5.44322 5.51621 5.55159 5.59093 5.62926 5.67196 5.70334 5.81392 5.84944 6.00439 6.12179 6.17326 6.24699 6.31129 6.36149 6.42572 6.52586 6.62799 6.66866 6.76696 6.92724 7.45329 7.59144 7.76663 8.07534 8.76382 9.24769 9.38697 9.54364 10.98176 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.003494 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.953723 B = 8012.478722 C = 9245.625221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.187 4.187 3 C 0.136 3.864 4 N -0.469 5.469 5 C 0.222 3.778 6 C -0.065 4.065 7 C 0.242 3.758 8 H 0.050 0.950 9 O -0.557 6.557 10 C -0.577 4.577 11 H 0.058 0.942 12 C 0.082 3.918 13 N -0.856 5.856 14 Si 0.890 3.110 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.287 5.287 19 N -0.319 5.319 20 C 0.328 3.672 21 N -0.459 5.459 22 C 0.023 3.977 23 C 0.079 3.921 24 C -0.116 4.116 25 H 0.091 0.909 26 C -0.146 4.146 27 C 0.045 3.955 28 O -0.380 6.380 29 C 0.060 3.940 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.349 0.651 38 H 0.262 0.738 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 -15.566 -9.384 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.206 4.206 3 C 0.014 3.986 4 N -0.163 5.163 5 C -0.046 4.046 6 C -0.105 4.105 7 C 0.183 3.817 8 H 0.068 0.932 9 O -0.359 6.359 10 C -0.615 4.615 11 H 0.076 0.924 12 C -0.125 4.125 13 N -0.491 5.491 14 Si 0.717 3.283 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.126 5.126 19 N -0.163 5.163 20 C -0.028 4.028 21 N -0.183 5.183 22 C -0.124 4.124 23 C -0.048 4.048 24 C -0.135 4.135 25 H 0.109 0.891 26 C -0.185 4.185 27 C -0.032 4.032 28 O -0.298 6.298 29 C -0.017 4.017 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.193 0.807 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.288 -14.613 -9.369 20.178 hybrid contribution -1.973 -0.599 0.235 2.075 sum 8.315 -15.213 -9.134 19.596 Atomic orbital electron populations 1.24074 0.95595 1.02930 0.96563 1.23094 0.96391 0.97734 1.03369 1.20948 0.92958 0.97361 0.87358 1.46163 1.09292 1.49846 1.10989 1.25250 0.99645 0.99435 0.80221 1.21232 0.85848 1.01773 1.01674 1.19254 0.88343 0.82109 0.91990 0.93221 1.86584 1.55438 1.75197 1.18704 1.21558 0.97306 0.93375 1.49290 0.92377 1.25025 0.96725 0.96849 0.93913 1.70074 1.33014 1.02494 1.43480 0.86721 0.84624 0.77727 0.79211 1.20022 1.21184 1.20156 1.73996 0.95835 1.17436 1.25287 1.74470 1.23688 1.19488 0.98690 1.22277 0.83742 1.04831 0.91959 1.58641 1.05653 1.20405 1.33603 1.22609 1.02775 0.85968 1.01051 1.22159 0.84165 0.96646 1.01807 1.22483 0.96820 0.96272 0.97927 0.89058 1.22917 0.94596 1.01989 0.98968 1.23383 0.90760 0.97110 0.91906 1.89193 1.21143 1.43903 1.75608 1.23460 0.90263 0.93050 0.94893 0.87848 0.87274 0.87170 0.87626 0.87815 0.90492 0.89338 0.80717 0.92790 0.94324 0.90696 0.89926 0.89869 0.91534 0.90266 0.90464 0.89326 0.92585 0.92228 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 14.32 29.02 0.42 -1.12 16 2 C -0.19 -2.02 9.31 -36.02 -0.34 -2.35 16 3 C 0.14 1.79 5.97 -5.19 -0.03 1.76 16 4 N -0.47 -7.76 2.79 -115.37 -0.32 -8.08 16 5 C 0.22 4.35 7.09 -154.02 -1.09 3.26 16 6 C -0.06 -1.29 5.13 -27.88 -0.14 -1.43 16 7 C 0.24 5.92 2.81 -27.88 -0.08 5.84 16 8 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 9 O -0.56 -14.67 12.48 -35.23 -0.44 -15.11 16 10 C -0.58 -15.03 8.76 -34.44 -0.30 -15.33 16 11 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 12 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 13 N -0.86 -24.89 12.84 55.43 0.71 -24.18 16 14 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 N -0.29 -6.15 12.18 32.99 0.40 -5.74 16 19 N -0.32 -6.19 10.65 30.32 0.32 -5.86 16 20 C 0.33 5.34 6.15 -318.86 -1.96 3.38 16 21 N -0.46 -5.63 4.61 -182.38 -0.84 -6.47 16 22 C 0.02 0.22 9.51 60.07 0.57 0.79 16 23 C 0.08 0.89 3.86 -3.83 -0.01 0.87 16 24 C -0.12 -1.47 3.09 -89.05 -0.28 -1.75 16 25 H 0.09 1.54 7.17 -51.93 -0.37 1.17 16 26 C -0.15 -1.55 6.74 -25.16 -0.17 -1.72 16 27 C 0.05 0.46 7.63 37.93 0.29 0.75 16 28 O -0.38 -5.24 11.66 -35.23 -0.41 -5.65 16 29 C 0.06 0.75 7.08 37.93 0.27 1.01 16 30 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.11 1.14 7.84 -52.48 -0.41 0.73 16 32 H 0.11 1.08 6.33 -52.49 -0.33 0.75 16 33 H 0.11 1.50 7.69 -51.93 -0.40 1.10 16 34 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.08 1.37 7.98 -51.93 -0.41 0.96 16 36 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.35 8.31 9.04 45.56 0.41 8.72 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.66 5.34 -51.93 -0.28 0.39 16 41 H 0.08 0.55 7.96 -51.93 -0.41 0.14 16 42 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 43 H 0.07 0.83 7.46 -51.93 -0.39 0.44 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.62 7.77 -51.93 -0.40 0.22 16 49 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 400.16 15.07 6.03 6.03 Total: -1.00 -33.46 400.16 -9.67 -43.13 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.15 Total: 10.40 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.95 Total: -3.92 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.27 Total: -50.33 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.85 Total: -20.76 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.46 -9.67 -43.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340317113.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.503 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds