Wall clock time and date at job start Sat Apr 11 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00122 * 2 1 4 4 N 1.46896 * 109.47008 * 125.00068 * 3 2 1 5 5 C 1.46900 * 111.00125 * 293.95182 * 4 3 2 6 6 C 1.38584 * 111.00076 * 170.00081 * 4 3 2 7 7 N 1.31219 * 126.47183 * 45.28936 * 6 4 3 8 8 N 1.28531 * 109.86158 * 180.25848 * 7 6 4 9 9 C 1.30301 * 110.05131 * 359.75156 * 8 7 6 10 10 C 1.50698 * 126.34657 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46964 * 269.95940 * 10 9 8 12 12 H 1.08996 * 109.47318 * 55.00206 * 11 10 9 13 13 O 1.42902 * 109.47198 * 294.99743 * 11 10 9 14 14 C 1.50703 * 109.46714 * 175.00072 * 11 10 9 15 15 H 1.07999 * 120.00364 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99640 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00155 * 179.97438 * 16 14 11 18 18 Si 1.86805 * 120.00315 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46709 * 89.99963 * 18 16 14 20 20 H 1.48492 * 109.47210 * 210.00287 * 18 16 14 21 21 H 1.48500 * 109.46882 * 330.00253 * 18 16 14 22 22 N 1.36455 * 126.47451 * 225.12829 * 6 4 3 23 23 C 1.46495 * 127.13391 * 0.02562 * 22 6 4 24 24 C 1.53001 * 109.46849 * 274.58918 * 23 22 6 25 25 H 1.08996 * 110.80526 * 351.59360 * 24 23 22 26 26 C 1.54821 * 110.90580 * 227.96756 * 24 23 22 27 27 C 1.54100 * 104.18525 * 220.88896 * 26 24 23 28 28 O 1.43744 * 107.29321 * 357.97111 * 27 26 24 29 29 C 1.44373 * 106.98037 * 26.51166 * 28 27 26 30 30 H 1.08003 * 120.00043 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00202 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.00043 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.46963 * 5.00051 * 3 2 1 34 34 H 1.08997 * 109.47341 * 245.00379 * 3 2 1 35 35 H 1.08992 * 109.47368 * 303.94365 * 5 4 3 36 36 H 1.09001 * 109.47102 * 63.95025 * 5 4 3 37 37 H 1.09006 * 109.46687 * 183.94238 * 5 4 3 38 38 H 1.09006 * 109.47021 * 29.95633 * 10 9 8 39 39 H 1.08993 * 109.46883 * 149.95738 * 10 9 8 40 40 H 0.96697 * 114.00132 * 300.00620 * 13 11 10 41 41 H 0.97001 * 120.00472 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.46764 * 154.59513 * 23 22 6 43 43 H 1.08999 * 109.47383 * 34.59375 * 23 22 6 44 44 H 1.09005 * 110.48516 * 339.56110 * 26 24 23 45 45 H 1.09000 * 110.48803 * 102.21406 * 26 24 23 46 46 H 1.09001 * 109.88171 * 117.39338 * 27 26 24 47 47 H 1.08999 * 109.87720 * 238.39794 * 27 26 24 48 48 H 1.08998 * 110.62573 * 201.43815 * 29 28 27 49 49 H 1.09008 * 110.61658 * 78.43788 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2712 1.3470 2.4120 6 6 3.8607 2.4111 1.0413 7 7 3.5360 3.6471 0.7436 8 7 4.5875 4.3863 0.7409 9 6 5.6361 3.6726 1.0395 10 6 7.0553 4.1692 1.1404 11 6 7.7367 4.0465 -0.2240 12 1 7.1451 4.5710 -0.9742 13 8 7.8435 2.6668 -0.5807 14 6 9.1136 4.6553 -0.1543 15 1 9.4670 5.0870 0.7705 16 6 9.9216 4.6622 -1.2714 17 7 11.1229 5.1939 -1.2108 18 14 9.3101 3.9161 -2.8711 19 1 8.6181 4.9587 -3.6707 20 1 10.4627 3.3848 -3.6419 21 1 8.3633 2.8119 -2.5722 22 7 5.2098 2.3897 1.2448 23 6 6.0320 1.2311 1.6025 24 6 6.0183 1.0455 3.1212 25 1 5.5310 1.8892 3.6099 26 6 7.4534 0.8450 3.6662 27 6 7.3028 -0.2613 4.7284 28 8 5.9076 -0.5999 4.7979 29 6 5.3338 -0.2897 3.5099 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 1.5857 2.1942 2.4306 36 1 1.7072 0.4206 2.5206 37 1 2.9830 1.4374 3.2326 38 1 7.0534 5.2135 1.4529 39 1 7.5980 3.5717 1.8727 40 1 8.3582 2.1378 0.0440 41 1 11.6916 5.1984 -1.9966 42 1 7.0558 1.3942 1.2656 43 1 5.6298 0.3384 1.1237 44 1 8.1222 0.5200 2.8691 45 1 7.8203 1.7644 4.1223 46 1 7.8826 -1.1369 4.4364 47 1 7.6463 0.1047 5.6959 48 1 4.2549 -0.1582 3.5918 49 1 5.5727 -1.0685 2.7856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344370367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:26 Heat of formation + Delta-G solvation = 18.578245 kcal Electronic energy + Delta-G solvation = -30859.574845 eV Core-core repulsion = 26824.333908 eV Total energy + Delta-G solvation = -4035.240937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.77326 -39.66002 -38.07414 -36.67099 -35.39304 -33.70381 -32.37711 -32.32765 -31.43157 -29.73234 -28.53379 -27.51138 -26.34168 -25.67497 -24.59489 -22.92936 -21.66349 -21.28804 -20.56758 -20.20358 -19.76176 -17.83383 -17.21146 -16.63732 -16.54846 -16.21473 -15.82476 -15.27948 -15.15315 -15.00066 -14.73940 -14.47549 -14.24137 -13.86019 -13.81171 -13.49098 -13.18453 -13.11002 -12.98783 -12.81803 -12.37684 -12.22845 -12.06913 -11.83411 -11.70331 -11.51882 -11.37024 -11.20826 -11.09323 -11.02711 -10.88505 -10.47641 -10.35093 -10.26900 -9.98319 -9.87009 -9.73428 -9.21533 -9.09118 -8.81300 -8.65246 -8.27090 -6.22587 -4.35582 1.84436 1.97536 2.46792 3.12102 3.34232 3.43801 3.60805 3.67045 3.71759 4.12732 4.45136 4.45449 4.53517 4.63061 4.73315 4.80781 4.83886 4.93129 4.96923 4.99195 5.09357 5.14399 5.15758 5.24775 5.29903 5.39358 5.43301 5.47339 5.53160 5.55029 5.59121 5.64469 5.67659 5.73072 5.80440 5.88929 5.98111 6.11185 6.19634 6.26635 6.31936 6.46199 6.58212 6.63498 6.76333 7.17303 7.33029 7.44340 8.14408 8.66161 8.83035 9.02428 9.40886 10.87411 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.004258 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.823114 B = 6573.711472 C = 8383.628500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.145 4.145 3 C 0.094 3.906 4 N -0.458 5.458 5 C 0.032 3.968 6 C 0.324 3.676 7 N -0.314 5.314 8 N -0.298 5.298 9 C 0.219 3.781 10 C -0.053 4.053 11 C 0.201 3.799 12 H 0.064 0.936 13 O -0.578 6.578 14 C -0.566 4.566 15 H 0.076 0.924 16 C 0.088 3.912 17 N -0.888 5.888 18 Si 0.869 3.131 19 H -0.286 1.286 20 H -0.295 1.295 21 H -0.220 1.220 22 N -0.456 5.456 23 C 0.122 3.878 24 C -0.137 4.137 25 H 0.090 0.910 26 C -0.153 4.153 27 C 0.047 3.953 28 O -0.380 6.380 29 C 0.056 3.944 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.349 0.651 41 H 0.266 0.734 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.285 -14.680 9.288 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.163 4.163 3 C -0.032 4.032 4 N -0.183 5.183 5 C -0.115 4.115 6 C -0.032 4.032 7 N -0.158 5.158 8 N -0.137 5.137 9 C -0.049 4.049 10 C -0.094 4.094 11 C 0.143 3.857 12 H 0.081 0.919 13 O -0.385 6.385 14 C -0.603 4.603 15 H 0.094 0.906 16 C -0.117 4.117 17 N -0.524 5.524 18 Si 0.696 3.304 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.142 1.142 22 N -0.149 5.149 23 C -0.001 4.001 24 C -0.157 4.157 25 H 0.108 0.892 26 C -0.191 4.191 27 C -0.029 4.029 28 O -0.299 6.299 29 C -0.020 4.020 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.196 0.804 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.165 -13.774 8.513 22.185 hybrid contribution 0.730 -0.720 -0.254 1.056 sum -14.434 -14.494 8.259 22.060 Atomic orbital electron populations 1.23910 0.95806 1.02067 1.00559 1.22838 0.95539 0.98168 0.99781 1.21237 0.93778 0.95532 0.92689 1.58577 1.19310 1.35907 1.04499 1.22491 0.97750 1.02199 0.89066 1.22172 0.83519 0.91642 1.05901 1.74506 1.21928 0.99166 1.20220 1.74051 0.94613 1.25570 1.19508 1.25329 0.99309 0.80134 1.00086 1.20970 0.83642 1.02491 1.02247 1.19811 0.95618 0.80349 0.89903 0.91877 1.86797 1.76058 1.22737 1.52868 1.21393 0.98279 1.41060 0.99544 0.90566 1.24953 0.94246 0.93188 0.99347 1.69936 1.08700 1.43289 1.30517 0.87044 0.79523 0.81783 0.82088 1.21213 1.22176 1.14201 1.46237 1.06709 1.09976 1.51949 1.21963 0.96861 0.87313 0.93942 1.23192 0.97183 0.99954 0.95367 0.89200 1.23101 0.96205 1.00292 0.99469 1.23154 0.83197 0.96850 0.99740 1.88870 1.22024 1.86218 1.32746 1.23702 0.98864 0.94059 0.85394 0.88503 0.88120 0.86666 0.92229 0.89538 0.93891 0.89911 0.91406 0.87937 0.90471 0.80425 0.92406 0.87340 0.88115 0.89575 0.89734 0.92125 0.89805 0.88697 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 14.32 29.02 0.42 -0.95 16 2 C -0.14 -1.23 8.69 -36.03 -0.31 -1.54 16 3 C 0.09 1.05 5.12 -4.98 -0.03 1.03 16 4 N -0.46 -5.40 4.77 -183.76 -0.88 -6.27 16 5 C 0.03 0.32 9.02 60.06 0.54 0.86 16 6 C 0.32 4.98 6.55 -318.86 -2.09 2.89 16 7 N -0.31 -5.85 11.93 30.32 0.36 -5.49 16 8 N -0.30 -6.02 12.18 32.99 0.40 -5.62 16 9 C 0.22 3.93 7.09 -154.01 -1.09 2.84 16 10 C -0.05 -0.96 5.00 -27.88 -0.14 -1.10 16 11 C 0.20 4.38 2.30 -27.88 -0.06 4.32 16 12 H 0.06 1.53 7.57 -51.93 -0.39 1.14 16 13 O -0.58 -11.69 9.15 -35.23 -0.32 -12.02 16 14 C -0.57 -14.61 9.34 -34.44 -0.32 -14.93 16 15 H 0.08 2.10 7.99 -52.49 -0.42 1.68 16 16 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 17 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 18 Si 0.87 21.22 26.99 -169.99 -4.59 16.63 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.22 -5.21 5.31 56.52 0.30 -4.91 16 22 N -0.46 -6.84 2.68 -114.08 -0.31 -7.14 16 23 C 0.12 1.40 5.99 -4.04 -0.02 1.38 16 24 C -0.14 -1.36 3.47 -88.61 -0.31 -1.67 16 25 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 26 C -0.15 -1.35 6.50 -25.20 -0.16 -1.52 16 27 C 0.05 0.42 7.70 37.73 0.29 0.71 16 28 O -0.38 -4.15 11.52 -35.23 -0.41 -4.56 16 29 C 0.06 0.52 7.04 38.21 0.27 0.79 16 30 H 0.10 0.71 7.84 -52.48 -0.41 0.29 16 31 H 0.10 0.60 8.06 -52.48 -0.42 0.17 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.06 0.70 7.74 -51.93 -0.40 0.30 16 34 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 35 H 0.04 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.08 0.64 7.41 -51.93 -0.38 0.26 16 37 H 0.07 0.67 6.95 -51.93 -0.36 0.31 16 38 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 39 H 0.08 1.21 7.79 -51.93 -0.40 0.81 16 40 H 0.35 5.89 7.68 45.56 0.35 6.24 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.11 1.25 4.62 -51.93 -0.24 1.01 16 43 H 0.10 1.06 7.46 -51.93 -0.39 0.67 16 44 H 0.09 0.69 7.52 -51.93 -0.39 0.30 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.84 6.72 -51.93 -0.35 0.49 16 49 H 0.07 0.54 7.77 -51.92 -0.40 0.14 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -32.66 392.42 -9.39 -42.05 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.22 Total: 6.32 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.12 Total: -4.58 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.35 Total: -49.75 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.73 Total: -16.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.66 -9.39 -42.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344370367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.629 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds