Wall clock time and date at job start Sat Apr 11 2020 04:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00294 * 2 1 4 4 C 1.50700 * 109.47108 * 269.99818 * 3 2 1 5 5 H 1.07995 * 119.99862 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00067 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00037 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99693 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47116 * 60.00219 * 8 6 4 10 10 H 1.48506 * 109.47008 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46988 * 299.99862 * 8 6 4 12 12 C 1.34779 * 120.00040 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00347 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99824 * 0.02562 * 12 2 1 15 15 C 1.52995 * 109.47204 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.47037 * 179.97438 * 15 14 12 17 17 C 1.46961 * 110.99735 * 169.99695 * 16 15 14 18 18 C 1.53059 * 109.36302 * 183.18721 * 17 16 15 19 19 N 1.46952 * 109.36370 * 301.60193 * 18 17 16 20 20 C 1.46906 * 110.99889 * 183.18679 * 19 18 17 21 21 C 1.50701 * 109.46965 * 170.00017 * 20 19 18 22 22 C 1.35446 * 126.77584 * 89.71225 * 21 20 19 23 23 C 1.41380 * 103.98557 * 179.90608 * 22 21 20 24 24 N 1.30178 * 106.39558 * 0.35900 * 23 22 21 25 25 O 1.20919 * 111.60270 * 359.77021 * 24 23 22 26 26 C 1.46961 * 110.88410 * 59.32054 * 19 18 17 27 27 C 1.46955 * 111.00246 * 293.79849 * 16 15 14 28 28 H 1.08996 * 109.47233 * 270.00672 * 1 2 3 29 29 H 1.09005 * 109.46853 * 30.00576 * 1 2 3 30 30 H 1.08997 * 109.47318 * 150.00266 * 1 2 3 31 31 H 1.09004 * 109.47240 * 29.99413 * 3 2 1 32 32 H 1.08997 * 109.47380 * 149.99388 * 3 2 1 33 33 H 0.97006 * 119.99428 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46944 * 59.98857 * 14 12 2 35 35 H 1.09005 * 109.46757 * 299.99235 * 14 12 2 36 36 H 1.09004 * 109.47133 * 59.99668 * 15 14 12 37 37 H 1.08996 * 109.46997 * 299.99748 * 15 14 12 38 38 H 1.09003 * 109.48904 * 63.22353 * 17 16 15 39 39 H 1.08989 * 109.49349 * 303.15552 * 17 16 15 40 40 H 1.08999 * 109.48651 * 181.63251 * 18 17 16 41 41 H 1.08996 * 109.48556 * 61.57139 * 18 17 16 42 42 H 1.08993 * 109.47164 * 289.99960 * 20 19 18 43 43 H 1.08996 * 109.46920 * 49.99994 * 20 19 18 44 44 H 1.07994 * 128.00953 * 0.02562 * 22 21 20 45 45 H 1.08001 * 126.80642 * 180.16377 * 23 22 21 46 46 H 1.09003 * 109.48904 * 60.64354 * 26 19 18 47 47 H 1.09002 * 109.49205 * 180.70887 * 26 19 18 48 48 H 1.09008 * 109.48713 * 296.78155 * 27 16 15 49 49 H 1.09002 * 109.48661 * 56.82117 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2416 6 6 3.1262 2.8778 -1.6728 7 7 3.5535 3.6180 -0.6732 8 14 3.4381 3.4166 -3.4340 9 1 2.1409 3.5933 -4.1347 10 1 4.1806 4.7027 -3.4341 11 1 4.2415 2.3817 -4.1332 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3853 -2.4724 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 2.5517 -6.0391 -0.2372 18 6 1.7390 -7.3342 -0.3081 19 7 0.9967 -7.5131 0.9474 20 6 0.2621 -8.7853 0.9481 21 6 -0.2821 -9.0504 2.3282 22 6 -1.4852 -8.6616 2.8139 23 6 -1.4973 -9.1611 4.1365 24 7 -0.3567 -9.7635 4.3122 25 8 0.3314 -9.7125 3.3192 26 6 0.0900 -6.3813 1.1857 27 6 0.9026 -5.0863 1.2567 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.0297 4.4442 -0.8506 34 1 0.7589 -2.5302 -0.8896 35 1 0.7584 -2.5299 0.8904 36 1 3.0062 -3.5775 0.8905 37 1 3.0061 -3.5776 -0.8895 38 1 3.2719 -6.1060 0.5783 39 1 3.0804 -5.8896 -1.1784 40 1 2.4125 -8.1784 -0.4559 41 1 1.0376 -7.2782 -1.1405 42 1 -0.5621 -8.7292 0.2371 43 1 0.9349 -9.5934 0.6613 44 1 -2.2574 -8.1016 2.3076 45 1 -2.2935 -9.0600 4.8591 46 1 -0.6303 -6.3144 0.3703 47 1 -0.4388 -6.5309 2.1271 48 1 1.6042 -5.1423 2.0891 49 1 0.2295 -4.2418 1.4047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364499607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:47:39 Heat of formation + Delta-G solvation = 48.939071 kcal Electronic energy + Delta-G solvation = -28810.683504 eV Core-core repulsion = 24776.759111 eV Total energy + Delta-G solvation = -4033.924393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.27053 -39.80088 -38.86967 -36.38965 -34.79315 -34.19714 -32.90790 -32.55896 -31.22162 -30.88863 -28.31900 -27.37254 -25.78512 -24.85465 -24.18055 -23.61640 -23.13487 -21.63393 -21.45498 -20.03400 -18.33247 -17.96086 -17.69680 -16.83538 -16.53558 -15.91741 -15.74786 -15.60030 -15.36912 -15.33002 -14.77557 -14.67645 -14.52281 -14.25576 -13.96495 -13.79710 -13.45564 -13.00286 -12.77136 -12.54400 -12.30064 -12.17133 -12.03726 -11.83188 -11.70382 -11.62657 -11.54150 -11.25927 -11.15599 -11.04272 -10.90392 -10.78532 -10.66849 -10.53235 -10.15249 -9.85738 -9.63734 -8.89800 -8.85673 -8.44376 -8.42801 -7.63199 -6.03667 -4.08487 1.05003 1.89545 2.67454 3.31953 3.36394 3.37923 3.45900 3.47244 3.61389 3.99524 4.13199 4.15599 4.45611 4.51532 4.54765 4.68625 4.77344 4.83925 4.95375 5.05088 5.11865 5.17795 5.20356 5.22891 5.24935 5.28667 5.30728 5.37443 5.47583 5.60540 5.62205 5.67927 5.68863 5.75950 5.82992 5.93018 6.09355 6.11695 6.22823 6.44287 6.52839 6.93178 6.94096 7.06983 7.45010 7.55142 7.89419 7.92649 8.24260 8.43393 8.90779 9.10978 9.56487 11.04345 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.001879 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.067906 B =14899.493327 C =15396.898634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.134 4.134 15 C 0.073 3.927 16 N -0.542 5.542 17 C 0.057 3.943 18 C 0.061 3.939 19 N -0.538 5.538 20 C 0.132 3.868 21 C -0.014 4.014 22 C -0.232 4.232 23 C -0.011 4.011 24 N -0.366 5.366 25 O 0.107 5.893 26 C 0.053 3.947 27 C 0.053 3.947 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.171 0.829 45 H 0.190 0.810 46 H 0.047 0.953 47 H 0.080 0.920 48 H 0.043 0.957 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 -26.106 3.908 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.175 4.175 15 C -0.054 4.054 16 N -0.267 5.267 17 C -0.071 4.071 18 C -0.066 4.066 19 N -0.264 5.264 20 C 0.003 3.997 21 C -0.079 4.079 22 C -0.254 4.254 23 C -0.190 4.190 24 N -0.068 5.068 25 O 0.039 5.961 26 C -0.074 4.074 27 C -0.076 4.076 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.188 0.812 45 H 0.207 0.793 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.061 0.939 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.394 -26.557 4.994 29.326 hybrid contribution -0.657 1.000 -1.326 1.786 sum -12.051 -25.557 3.668 28.493 Atomic orbital electron populations 1.21631 0.81475 1.02613 1.00302 1.48162 1.06173 1.07901 1.71345 1.19275 0.92537 0.78159 0.97470 1.21395 1.36566 1.06230 0.92291 0.92528 1.24950 0.95381 0.96416 0.97457 1.69928 1.38370 1.14339 1.30784 0.86549 0.78345 0.77809 0.84654 1.20260 1.21183 1.20174 1.20303 0.88076 0.85172 0.77446 1.90666 1.14005 1.87361 1.50299 1.21638 0.99260 0.92736 1.03834 1.21790 0.94541 0.86506 1.02602 1.62168 1.28028 1.02376 1.34103 1.22134 0.94022 0.89230 1.01762 1.22190 0.97033 0.98041 0.89384 1.62094 1.27414 1.01049 1.35800 1.20459 0.98346 0.93796 0.87082 1.24351 0.92794 0.97237 0.93529 1.22615 0.99565 1.07407 0.95857 1.25061 0.96999 0.99288 0.97616 1.73921 1.05658 1.20403 1.06824 1.84841 1.39139 1.56344 1.15738 1.22293 0.94141 0.89674 1.01340 1.22203 0.97514 0.96785 0.91058 0.93879 0.90848 0.92334 0.95087 0.93895 0.92675 0.88758 0.89915 0.93801 0.89740 0.93693 0.89729 0.89845 0.93382 0.90923 0.88117 0.81181 0.79280 0.93468 0.90197 0.93871 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.78 2.86 -182.96 -0.52 -13.30 16 3 C 0.24 6.46 5.16 -5.20 -0.03 6.43 16 4 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.50 10.33 7.67 -10.98 -0.08 10.24 16 13 O -0.55 -13.63 15.56 5.56 0.09 -13.54 16 14 C -0.13 -1.92 4.19 -27.88 -0.12 -2.03 16 15 C 0.07 1.01 4.25 -3.83 -0.02 0.99 16 16 N -0.54 -5.91 4.71 -234.47 -1.10 -7.01 16 17 C 0.06 0.54 5.61 -3.76 -0.02 0.52 16 18 C 0.06 0.44 5.61 -3.77 -0.02 0.42 16 19 N -0.54 -4.12 4.70 -235.91 -1.11 -5.23 16 20 C 0.13 0.75 5.53 -4.97 -0.03 0.72 16 21 C -0.01 -0.11 6.37 -35.30 -0.23 -0.33 16 22 C -0.23 -1.50 9.66 -39.38 -0.38 -1.88 16 23 C -0.01 -0.09 12.17 -17.06 -0.21 -0.29 16 24 N -0.37 -3.79 12.07 30.36 0.37 -3.43 16 25 O 0.11 1.06 11.20 17.17 0.19 1.25 16 26 C 0.05 0.42 5.38 -3.77 -0.02 0.40 16 27 C 0.05 0.51 5.41 -3.77 -0.02 0.49 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 34 H 0.09 1.25 7.40 -51.93 -0.38 0.86 16 35 H 0.08 1.01 6.46 -51.93 -0.34 0.67 16 36 H 0.04 0.66 8.08 -51.93 -0.42 0.25 16 37 H 0.08 1.27 7.98 -51.93 -0.41 0.85 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.76 8.07 -51.94 -0.42 0.34 16 40 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 43 H 0.10 0.46 8.03 -51.93 -0.42 0.04 16 44 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.60 6.16 -51.93 -0.32 0.28 16 48 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 49 H 0.08 0.77 6.34 -51.93 -0.33 0.44 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -34.86 394.99 -9.34 -44.20 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -7.94 Total: -3.66 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -0.98 Total: 3.90 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.63 Total: -54.99 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.28 Total: -12.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.86 -9.34 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364499607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.142 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds