Wall clock time and date at job start Sat Apr 11 2020 04:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00090 * 2 1 4 4 H 1.08000 * 119.99982 * 201.97417 * 3 2 1 5 5 C 1.38814 * 120.00104 * 21.96184 * 3 2 1 6 6 N 1.31625 * 119.99971 * 18.13917 * 5 3 2 7 7 Si 1.86800 * 120.00044 * 198.13185 * 5 3 2 8 8 H 1.48501 * 109.47046 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47210 * 120.00630 * 7 5 3 10 10 H 1.48506 * 109.47020 * 240.00248 * 7 5 3 11 11 C 1.46496 * 119.99820 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47418 * 270.00408 * 11 2 1 13 13 H 1.09004 * 109.46822 * 60.00207 * 12 11 2 14 14 O 1.42901 * 109.47387 * 300.00234 * 12 11 2 15 15 C 1.52998 * 109.47363 * 179.97438 * 12 11 2 16 16 N 1.46491 * 109.47634 * 185.00097 * 15 12 11 17 17 C 1.46503 * 120.00342 * 270.00788 * 16 15 12 18 18 C 1.34778 * 119.99883 * 90.00150 * 16 15 12 19 19 O 1.21273 * 120.00145 * 5.28575 * 18 16 15 20 20 C 1.50704 * 120.00081 * 185.29077 * 18 16 15 21 21 H 1.09008 * 109.71260 * 331.14529 * 20 18 16 22 22 C 1.53384 * 109.72077 * 91.75507 * 20 18 16 23 23 C 1.53030 * 109.71846 * 170.25806 * 22 20 18 24 24 C 1.53372 * 109.74474 * 288.26423 * 23 22 20 25 25 C 1.50958 * 108.20407 * 50.64190 * 24 23 22 26 26 N 1.30121 * 128.28075 * 163.30263 * 25 24 23 27 27 N 1.40316 * 108.12302 * 180.18210 * 26 25 24 28 28 H 0.96998 * 126.00886 * 180.02562 * 27 26 25 29 29 C 1.35199 * 107.98992 * 359.97438 * 27 26 25 30 30 C 1.34577 * 107.61832 * 0.19695 * 29 27 26 31 31 H 1.08994 * 109.47968 * 274.44147 * 1 2 3 32 32 H 1.09005 * 109.46809 * 34.44370 * 1 2 3 33 33 H 1.09002 * 109.47063 * 154.43292 * 1 2 3 34 34 H 0.96991 * 120.00095 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.46955 * 150.00697 * 11 2 1 36 36 H 1.08994 * 109.47120 * 30.00983 * 11 2 1 37 37 H 0.96696 * 113.99844 * 299.99988 * 14 12 11 38 38 H 1.09005 * 109.47022 * 65.00026 * 15 12 11 39 39 H 1.08999 * 109.47583 * 305.00592 * 15 12 11 40 40 H 1.09007 * 109.46690 * 268.35864 * 17 16 15 41 41 H 1.09003 * 109.47150 * 28.35192 * 17 16 15 42 42 H 1.09000 * 109.47307 * 148.35945 * 17 16 15 43 43 H 1.08997 * 109.43260 * 50.18036 * 22 20 18 44 44 H 1.09009 * 109.39057 * 290.30593 * 22 20 18 45 45 H 1.08997 * 109.42666 * 168.18196 * 23 22 20 46 46 H 1.09000 * 109.42315 * 48.34391 * 23 22 20 47 47 H 1.09002 * 109.71784 * 290.96664 * 24 23 22 48 48 H 1.08998 * 109.75329 * 170.34008 * 24 23 22 49 49 H 1.08004 * 126.19138 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1708 1.2199 -0.3500 5 6 1.5312 2.3445 0.4496 6 7 0.4488 2.2661 1.1944 7 14 2.2351 4.0147 -0.0023 8 1 3.4462 3.8307 -0.8417 9 1 1.2211 4.7906 -0.7604 10 1 2.5974 4.7506 1.2357 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4432 13 1 1.4999 -1.8400 1.9570 14 8 3.2246 -0.7137 2.1166 15 6 3.2167 -3.0352 1.4438 16 7 3.3566 -3.5178 2.8199 17 6 4.5213 -3.1275 3.6183 18 6 2.4136 -4.3208 3.3514 19 8 1.4997 -4.7216 2.6623 20 6 2.4949 -4.7205 4.8022 21 1 3.5369 -4.7347 5.1219 22 6 1.7042 -3.7237 5.6588 23 6 1.5813 -4.2552 7.0886 24 6 0.6077 -5.4399 7.1190 25 6 1.0208 -6.4175 6.0454 26 7 0.6732 -7.6645 5.9137 27 7 1.3059 -8.1755 4.7703 28 1 1.2264 -9.0807 4.4310 29 6 2.0449 -7.1840 4.2237 30 6 1.8906 -6.0900 4.9920 31 1 -0.3635 0.0796 1.0245 32 1 -0.3633 0.8476 -0.5813 33 1 -0.3633 -0.9271 -0.4435 34 1 0.0169 3.0756 1.5089 35 1 3.1499 -1.1386 -0.5132 36 1 1.6084 -2.0285 -0.5130 37 1 4.0871 -0.5454 1.7131 38 1 4.2051 -2.8848 1.0093 39 1 2.6691 -3.7708 0.8547 40 1 5.3097 -3.8706 3.4981 41 1 4.8834 -2.1560 3.2818 42 1 4.2374 -3.0656 4.6689 43 1 0.7090 -3.5906 5.2347 44 1 2.2240 -2.7656 5.6716 45 1 1.2094 -3.4636 7.7389 46 1 2.5604 -4.5816 7.4393 47 1 -0.4057 -5.0881 6.9258 48 1 0.6487 -5.9255 8.0940 49 1 2.6523 -7.2578 3.3337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734539607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:49 Heat of formation + Delta-G solvation = 15.156039 kcal Electronic energy + Delta-G solvation = -30351.810882 eV Core-core repulsion = 26316.421546 eV Total energy + Delta-G solvation = -4035.389335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.70382 -39.77499 -37.36280 -36.38778 -35.23062 -34.33409 -32.47242 -31.31876 -30.66270 -29.71252 -28.65871 -26.78212 -26.01757 -25.64871 -24.40896 -22.33460 -21.94585 -21.24234 -20.38853 -19.15142 -18.81966 -17.72872 -17.09403 -16.78775 -16.05797 -15.70854 -15.25116 -15.10546 -14.79287 -14.56957 -14.41030 -14.27272 -13.92071 -13.56580 -13.30495 -13.23622 -13.05809 -12.83755 -12.64216 -12.58579 -12.39925 -12.06823 -11.81747 -11.45394 -11.37705 -11.24245 -11.13175 -10.95627 -10.80778 -10.58567 -10.48560 -10.43952 -10.25074 -9.95014 -9.82843 -9.68855 -9.48385 -9.41198 -8.54494 -8.46018 -8.27387 -6.64526 -5.62604 -3.04610 1.80900 2.56353 2.69719 2.77210 3.20508 3.42972 3.49757 3.51782 4.25266 4.54777 4.57957 4.63518 4.76578 4.91303 5.06112 5.07614 5.12874 5.21272 5.28287 5.29656 5.35112 5.46434 5.47100 5.48755 5.55766 5.67688 5.72410 5.78352 5.86226 5.87042 5.94949 6.02140 6.04042 6.07593 6.14527 6.21243 6.49010 6.52115 6.66419 6.80702 6.90836 7.15886 7.37676 7.50882 7.56209 7.77097 7.87396 8.33360 8.44233 8.52698 9.30644 9.95389 10.44875 11.43461 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.002748 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.510040 B =10187.439962 C =10463.060799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.590 5.590 3 C -0.242 4.242 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.901 5.901 7 Si 0.899 3.101 8 H -0.280 1.280 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.123 3.877 12 C 0.074 3.926 13 H 0.088 0.912 14 O -0.533 6.533 15 C 0.080 3.920 16 N -0.606 5.606 17 C 0.079 3.921 18 C 0.518 3.482 19 O -0.535 6.535 20 C -0.025 4.025 21 H 0.094 0.906 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.041 4.041 25 C 0.091 3.909 26 N -0.294 5.294 27 N -0.486 5.486 28 H 0.438 0.562 29 C 0.083 3.917 30 C -0.218 4.218 31 H 0.029 0.971 32 H 0.040 0.960 33 H -0.001 1.001 34 H 0.249 0.751 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.356 0.644 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 -18.376 9.530 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.311 5.311 3 C -0.372 4.372 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.545 5.545 7 Si 0.729 3.271 8 H -0.205 1.205 9 H -0.219 1.219 10 H -0.219 1.219 11 C -0.006 4.006 12 C 0.011 3.989 13 H 0.106 0.894 14 O -0.335 6.335 15 C -0.043 4.043 16 N -0.338 5.338 17 C -0.064 4.064 18 C 0.305 3.695 19 O -0.411 6.411 20 C -0.048 4.048 21 H 0.112 0.888 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.080 4.080 25 C -0.078 4.078 26 N -0.116 5.116 27 N -0.193 5.193 28 H 0.282 0.718 29 C -0.063 4.063 30 C -0.230 4.230 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.201 0.799 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.492 -19.379 10.056 22.778 hybrid contribution 1.311 1.084 -1.170 2.065 sum 7.803 -18.295 8.887 21.784 Atomic orbital electron populations 1.20781 0.82685 0.95556 0.99385 1.43890 1.01696 1.00437 1.85117 1.19048 0.97733 0.84819 1.35594 0.91681 1.24928 0.98455 0.98166 0.98019 1.70113 1.22081 1.26625 1.35719 0.86285 0.78193 0.84962 0.77644 1.20505 1.21867 1.21938 1.21463 0.96458 0.89398 0.93253 1.23158 0.94047 0.84476 0.97259 0.89427 1.86702 1.32031 1.59798 1.54995 1.22428 1.01336 0.98303 0.82236 1.47777 1.22843 1.48774 1.14447 1.21842 0.87444 1.01000 0.96140 1.20523 0.81690 0.78046 0.89244 1.90687 1.33618 1.54673 1.62101 1.19716 1.00543 0.91947 0.92555 0.88810 1.21514 1.01321 0.97376 0.94424 1.21544 0.99680 0.97107 0.96603 1.20173 1.00063 0.92686 0.95098 1.22291 0.95959 0.92349 0.97178 1.76967 1.19985 1.11294 1.03343 1.46237 1.38601 1.12585 1.21919 0.71833 1.21953 0.97098 0.88685 0.98534 1.19461 1.08250 0.95472 0.99820 0.95274 0.94115 0.98251 0.94055 0.93656 0.93758 0.79933 0.90828 0.89597 0.93234 0.90112 0.91114 0.90717 0.90455 0.90359 0.91317 0.89588 0.89921 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 9.05 59.85 0.54 4.65 16 2 N -0.59 -14.89 2.87 -181.12 -0.52 -15.41 16 3 C -0.24 -6.59 8.98 -15.06 -0.14 -6.72 16 4 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 5 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 6 N -0.90 -26.93 10.96 55.49 0.61 -26.32 16 7 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 C 0.12 2.46 5.43 -4.04 -0.02 2.44 16 12 C 0.07 1.37 3.48 -26.73 -0.09 1.27 16 13 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 14 O -0.53 -10.35 11.47 -35.23 -0.40 -10.76 16 15 C 0.08 1.14 5.10 -4.05 -0.02 1.11 16 16 N -0.61 -7.87 2.84 -181.57 -0.52 -8.38 16 17 C 0.08 0.75 9.73 59.85 0.58 1.34 16 18 C 0.52 7.45 6.49 -10.98 -0.07 7.37 16 19 O -0.53 -9.73 15.52 5.56 0.09 -9.64 16 20 C -0.03 -0.29 2.05 -92.63 -0.19 -0.48 16 21 H 0.09 0.86 6.38 -51.92 -0.33 0.53 16 22 C -0.11 -1.21 5.11 -26.52 -0.14 -1.35 16 23 C -0.11 -0.96 5.86 -26.52 -0.16 -1.11 16 24 C -0.04 -0.40 6.31 -27.56 -0.17 -0.57 16 25 C 0.09 1.13 7.10 -82.35 -0.58 0.55 16 26 N -0.29 -3.83 12.68 33.75 0.43 -3.40 16 27 N -0.49 -5.14 7.37 30.35 0.22 -4.92 16 28 H 0.44 3.10 8.96 -182.43 -1.64 1.47 16 29 C 0.08 0.93 11.06 -17.36 -0.19 0.74 16 30 C -0.22 -2.69 5.06 -104.98 -0.53 -3.22 16 31 H 0.03 0.82 7.40 -51.93 -0.38 0.43 16 32 H 0.04 1.10 7.36 -51.93 -0.38 0.72 16 33 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 35 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.04 0.83 7.86 -51.93 -0.41 0.43 16 37 H 0.36 5.70 9.04 45.56 0.41 6.12 16 38 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 39 H 0.09 1.29 7.36 -51.93 -0.38 0.91 16 40 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.08 0.79 7.14 -51.93 -0.37 0.42 16 42 H 0.07 0.60 5.89 -51.93 -0.31 0.29 16 43 H 0.07 1.01 8.07 -51.93 -0.42 0.60 16 44 H 0.08 0.84 7.72 -51.92 -0.40 0.44 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.17 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -36.47 390.61 -8.86 -45.34 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.36 Total: 4.60 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.27 Total: 6.02 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.23 Total: -58.44 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.32 Total: -20.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.47 -8.86 -45.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734539607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.492 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds