Wall clock time and date at job start Sat Apr 11 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99755 * 2 1 4 4 H 1.48507 * 109.47139 * 239.99888 * 3 2 1 5 5 H 1.48498 * 109.47395 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47317 * 119.99976 * 3 2 1 7 7 C 1.37873 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47162 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47009 * 180.02562 * 10 9 7 12 12 C 1.46923 * 124.34862 * 269.99367 * 11 10 9 13 13 C 1.53808 * 105.35402 * 196.44761 * 12 11 10 14 14 C 1.53993 * 102.45808 * 335.29113 * 13 12 11 15 15 C 1.34490 * 124.35350 * 90.02713 * 11 10 9 16 16 O 1.21285 * 124.94817 * 359.57917 * 15 11 10 17 17 C 1.52241 * 110.64178 * 217.48513 * 13 12 11 18 18 C 1.53264 * 109.35650 * 178.97204 * 17 13 12 19 19 C 1.53129 * 109.05779 * 56.43957 * 18 17 13 20 20 C 1.53036 * 109.40589 * 301.74345 * 19 18 17 21 21 N 1.45966 * 110.80183 * 93.35935 * 13 12 11 22 22 C 1.46906 * 111.00097 * 307.59354 * 21 13 12 23 23 C 1.52999 * 109.47311 * 167.18837 * 22 21 13 24 24 H 1.08998 * 110.45700 * 311.01541 * 23 22 21 25 25 C 1.54503 * 110.51032 * 188.41156 * 23 22 21 26 26 C 1.54487 * 104.06044 * 241.35128 * 25 23 22 27 27 O 1.44425 * 104.80433 * 336.02247 * 26 25 23 28 28 C 1.44427 * 105.27241 * 40.50911 * 27 26 25 29 29 H 0.96997 * 120.00194 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47670 * 60.00100 * 9 7 2 31 31 H 1.09001 * 109.47214 * 299.99898 * 9 7 2 32 32 H 1.09005 * 109.47298 * 59.99732 * 10 9 7 33 33 H 1.09001 * 109.46835 * 299.99962 * 10 9 7 34 34 H 1.09000 * 110.26494 * 77.47644 * 12 11 10 35 35 H 1.09005 * 110.27171 * 315.41997 * 12 11 10 36 36 H 1.08999 * 110.50512 * 142.77604 * 14 13 12 37 37 H 1.09007 * 110.50772 * 265.48081 * 14 13 12 38 38 H 1.08998 * 109.49044 * 59.00698 * 17 13 12 39 39 H 1.09002 * 109.48914 * 298.93279 * 17 13 12 40 40 H 1.08999 * 109.53751 * 296.56605 * 18 17 13 41 41 H 1.08995 * 109.53904 * 176.31132 * 18 17 13 42 42 H 1.09000 * 109.47965 * 181.76733 * 19 18 17 43 43 H 1.08998 * 109.49043 * 61.73228 * 19 18 17 44 44 H 1.08997 * 109.48026 * 299.77260 * 20 19 18 45 45 H 1.09000 * 109.47187 * 179.76397 * 20 19 18 46 46 H 1.08998 * 109.47236 * 47.18596 * 22 21 13 47 47 H 1.08998 * 109.47033 * 287.18861 * 22 21 13 48 48 H 1.08997 * 110.51383 * 122.71095 * 25 23 22 49 49 H 1.08993 * 110.63077 * 0.05284 * 25 23 22 50 50 H 1.08999 * 110.37081 * 94.85261 * 26 25 23 51 51 H 1.08995 * 110.37413 * 217.18606 * 26 25 23 52 52 H 1.09005 * 110.37178 * 200.65568 * 28 27 26 53 53 H 1.09002 * 110.46931 * 78.37022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0012 12 6 1.0972 -5.6486 1.2139 13 6 0.7592 -7.0747 0.7473 14 6 0.4092 -6.8643 -0.7375 15 6 1.1351 -5.5885 -1.1094 16 8 1.3449 -5.2140 -2.2438 17 6 -0.4435 -7.6170 1.5069 18 6 -0.7699 -9.0267 1.0019 19 6 0.4706 -9.9117 1.1533 20 6 1.6316 -9.2988 0.3668 21 7 1.9171 -7.9529 0.8841 22 6 3.0967 -7.3753 0.2261 23 6 4.3475 -8.1460 0.6531 24 1 4.3766 -8.2543 1.7373 25 6 5.6215 -7.4341 0.1458 26 6 6.2847 -8.4715 -0.7872 27 8 5.7876 -9.7487 -0.3316 28 6 4.3917 -9.5291 -0.0333 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5572 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8714 -3.6039 0.8923 33 1 2.8727 -3.6046 -0.8877 34 1 0.2173 -5.1754 1.6497 35 1 1.9121 -5.6711 1.9375 36 1 0.7720 -7.6989 -1.3373 37 1 -0.6667 -6.7419 -0.8626 38 1 -1.3012 -6.9645 1.3435 39 1 -0.2136 -7.6564 2.5717 40 1 -1.0584 -8.9800 -0.0482 41 1 -1.5888 -9.4435 1.5881 42 1 0.2557 -10.9080 0.7669 43 1 0.7415 -9.9809 2.2068 44 1 1.3620 -9.2333 -0.6873 45 1 2.5163 -9.9258 0.4773 46 1 3.1981 -6.3292 0.5151 47 1 2.9793 -7.4436 -0.8554 48 1 6.2815 -7.1927 0.9789 49 1 5.3625 -6.5323 -0.4087 50 1 5.9883 -8.2960 -1.8213 51 1 7.3696 -8.4301 -0.6904 52 1 4.0222 -10.3003 0.6427 53 1 3.8033 -9.5164 -0.9508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272509607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:50:46 Heat of formation + Delta-G solvation = -92.620849 kcal Electronic energy + Delta-G solvation = -31685.348433 eV Core-core repulsion = 27748.825884 eV Total energy + Delta-G solvation = -3936.522548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61231 -40.49729 -39.35444 -37.18733 -35.57668 -35.45207 -33.78177 -32.63891 -31.31910 -30.05046 -29.68184 -27.84861 -27.10296 -25.92518 -23.88500 -23.69626 -23.32964 -22.36392 -21.30301 -20.48518 -19.65810 -18.65428 -18.09661 -17.60830 -17.28004 -16.88332 -16.60560 -16.40839 -16.23231 -16.12318 -15.64551 -15.40835 -15.13347 -14.77124 -14.60718 -14.54872 -14.35844 -14.06809 -13.89195 -13.77732 -13.53212 -13.33676 -13.10152 -12.99464 -12.86742 -12.82326 -12.61647 -12.54986 -12.33065 -12.09850 -11.99597 -11.90254 -11.72146 -11.61146 -11.47538 -11.37717 -11.22555 -11.07463 -10.83760 -10.79633 -10.60590 -9.63747 -9.37860 -8.25028 -6.37974 1.38158 1.42121 1.49293 1.52421 2.05980 2.40042 2.65073 2.99477 3.08692 3.27094 3.35635 3.60917 3.74871 3.81181 3.85695 3.88629 4.05552 4.14691 4.22533 4.24042 4.31456 4.32828 4.35526 4.40478 4.49891 4.52291 4.56312 4.62138 4.65248 4.69257 4.75898 4.76221 4.80553 4.85191 4.89176 4.92875 4.99485 5.04712 5.12270 5.15891 5.23462 5.26380 5.31131 5.36036 5.42595 5.54902 5.56383 5.78413 5.80182 6.01168 6.10871 6.12926 6.21853 6.76957 7.13316 7.32015 8.86973 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.003472 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.286894 B = 8063.573373 C = 9687.656379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.024 3.976 10 C 0.145 3.855 11 N -0.611 5.611 12 C 0.105 3.895 13 C 0.120 3.880 14 C -0.174 4.174 15 C 0.499 3.501 16 O -0.592 6.592 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.111 4.111 20 C 0.028 3.972 21 N -0.508 5.508 22 C 0.058 3.942 23 C -0.106 4.106 24 H 0.102 0.898 25 C -0.152 4.152 26 C 0.042 3.958 27 O -0.396 6.396 28 C 0.047 3.953 29 H 0.264 0.736 30 H -0.028 1.028 31 H 0.002 0.998 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.030 0.970 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.016 0.984 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.054 0.946 51 H 0.105 0.895 52 H 0.114 0.886 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -24.323 6.708 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.014 4.014 10 C 0.023 3.977 11 N -0.343 5.343 12 C -0.018 4.018 13 C 0.029 3.971 14 C -0.215 4.215 15 C 0.289 3.711 16 O -0.474 6.474 17 C -0.134 4.134 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.098 4.098 21 N -0.231 5.231 22 C -0.070 4.070 23 C -0.126 4.126 24 H 0.120 0.880 25 C -0.190 4.190 26 C -0.034 4.034 27 O -0.316 6.316 28 C -0.029 4.029 29 H 0.073 0.927 30 H -0.010 1.010 31 H 0.020 0.980 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.048 0.952 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.034 0.966 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.124 0.876 52 H 0.132 0.868 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.453 -24.199 6.682 25.497 hybrid contribution -0.233 1.872 -1.515 2.419 sum 4.219 -22.327 5.167 23.302 Atomic orbital electron populations 1.70107 1.07982 1.27989 1.51132 1.25999 0.95752 1.03531 0.94340 0.85444 0.78238 0.77694 0.79342 1.19581 1.20838 1.18334 1.21505 0.93731 0.91778 1.51388 0.91530 1.19201 0.94557 0.93120 0.94490 1.21354 0.93832 0.80930 1.01566 1.48676 1.55456 1.22416 1.07714 1.22375 1.01965 0.90412 0.87003 1.21354 0.92809 0.91483 0.91436 1.23063 1.02806 0.95110 1.00550 1.21604 0.78470 0.87007 0.84066 1.90666 1.59594 1.73680 1.23438 1.21467 0.94041 0.97291 1.00643 1.21630 0.98481 0.94218 1.01431 1.21574 0.93272 0.98649 1.01346 1.22783 1.00923 0.89274 0.96828 1.61938 1.02254 1.02470 1.56402 1.22284 0.90113 0.99337 0.95239 1.22455 0.93143 0.94627 1.02326 0.88008 1.22976 0.96859 0.98787 1.00408 1.23501 1.00472 0.82336 0.97136 1.89104 1.24564 1.31593 1.86300 1.23958 0.82594 0.97298 0.99006 0.92687 1.00989 0.97991 0.89088 0.92975 0.90127 0.88155 0.87801 0.86588 0.90651 0.89230 0.92395 0.89873 0.90010 0.90418 0.95161 0.88120 0.90699 0.96576 0.89264 0.91399 0.92775 0.87649 0.86812 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.32 5.30 29.85 0.16 1.48 16 10 C 0.14 6.15 5.87 86.38 0.51 6.65 16 11 N -0.61 -21.77 1.76 -818.58 -1.44 -23.21 16 12 C 0.10 2.71 5.68 86.57 0.49 3.20 16 13 C 0.12 2.44 0.72 4.06 0.00 2.44 16 14 C -0.17 -4.48 4.48 30.41 0.14 -4.34 16 15 C 0.50 18.91 6.59 87.93 0.58 19.49 16 16 O -0.59 -28.73 17.60 -3.05 -0.05 -28.78 16 17 C -0.10 -1.44 4.66 30.43 0.14 -1.29 16 18 C -0.12 -1.41 5.81 30.73 0.18 -1.23 16 19 C -0.11 -1.19 6.07 30.65 0.19 -1.00 16 20 C 0.03 0.41 4.33 86.30 0.37 0.78 16 21 N -0.51 -9.14 4.44 -846.52 -3.76 -12.90 16 22 C 0.06 1.27 2.91 86.30 0.25 1.52 16 23 C -0.11 -1.92 3.25 -9.78 -0.03 -1.95 16 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 25 C -0.15 -2.83 6.73 31.61 0.21 -2.62 16 26 C 0.04 0.78 7.63 72.49 0.55 1.33 16 27 O -0.40 -8.47 11.65 -148.98 -1.74 -10.21 16 28 C 0.05 0.82 5.17 72.48 0.37 1.19 16 29 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 30 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 33 H 0.05 2.38 7.93 -2.39 -0.02 2.37 16 34 H 0.08 2.10 7.85 -2.39 -0.02 2.08 16 35 H 0.10 2.34 7.46 -2.38 -0.02 2.33 16 36 H 0.10 2.52 5.74 -2.39 -0.01 2.51 16 37 H 0.12 2.78 7.80 -2.38 -0.02 2.76 16 38 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 0.75 7.57 -2.39 -0.02 0.73 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.03 0.50 6.19 -2.39 -0.01 0.48 16 45 H 0.10 1.25 3.77 -2.39 -0.01 1.24 16 46 H 0.07 1.93 5.32 -2.39 -0.01 1.92 16 47 H 0.02 0.42 6.69 -2.39 -0.02 0.41 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.07 1.44 7.74 -2.39 -0.02 1.42 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.11 1.53 6.61 -2.38 -0.02 1.52 16 53 H 0.05 0.97 7.01 -2.39 -0.02 0.96 16 Total: -1.00 -74.93 390.69 1.02 -73.91 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.89 Total: 16.90 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 4.81 Total: -4.85 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -4.91 Total: -93.46 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.79 Total: -38.99 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -74.93 1.02 -73.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272509607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.710 kcal (2) G-P(sol) polarization free energy of solvation -74.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds