Wall clock time and date at job start Sat Apr 11 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47297 * 2 1 4 4 C 1.52998 * 109.46841 * 120.00003 * 2 1 3 5 5 N 1.46496 * 109.47352 * 66.20592 * 4 2 1 6 6 C 1.36738 * 127.13325 * 273.68586 * 5 4 2 7 7 C 1.50705 * 126.35125 * 359.96561 * 6 5 4 8 8 C 1.52996 * 109.46927 * 270.28739 * 7 6 5 9 9 C 1.52995 * 109.47279 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47314 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00215 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99894 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00159 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47115 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46882 * 120.00078 * 14 12 10 17 17 H 1.48498 * 109.47303 * 239.99986 * 14 12 10 18 18 N 1.30293 * 107.30649 * 180.22587 * 6 5 4 19 19 N 1.28533 * 110.05451 * 359.77387 * 18 6 5 20 20 C 1.31223 * 109.85601 * 359.97438 * 19 18 6 21 21 N 1.38576 * 126.47027 * 179.97438 * 20 19 18 22 22 C 1.47104 * 111.05819 * 117.59930 * 21 20 19 23 23 C 1.53102 * 109.28311 * 177.62883 * 22 21 20 24 24 O 1.43022 * 109.25854 * 56.84455 * 23 22 21 25 25 C 1.43014 * 113.73690 * 301.33428 * 24 23 22 26 26 H 1.09007 * 109.50439 * 298.72961 * 25 24 23 27 27 C 1.52999 * 109.54061 * 178.62724 * 25 24 23 28 28 C 1.47010 * 111.00323 * 353.98122 * 21 20 19 29 29 H 1.08993 * 109.47585 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47208 * 300.00164 * 1 2 3 31 31 H 1.09003 * 109.47269 * 60.00005 * 1 2 3 32 32 H 1.09000 * 109.47208 * 239.99836 * 2 1 3 33 33 H 1.09005 * 109.47291 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46957 * 300.00186 * 3 2 1 35 35 H 1.09000 * 109.47126 * 59.99786 * 3 2 1 36 36 H 1.08994 * 109.47147 * 306.19976 * 4 2 1 37 37 H 1.09001 * 109.46629 * 186.20210 * 4 2 1 38 38 H 1.08997 * 109.46582 * 30.28192 * 7 6 5 39 39 H 1.08994 * 109.47451 * 150.28341 * 7 6 5 40 40 H 1.08999 * 109.47326 * 299.99889 * 8 7 6 41 41 H 1.09010 * 109.47091 * 59.99488 * 8 7 6 42 42 H 1.08999 * 109.47275 * 300.00440 * 9 8 7 43 43 H 1.09010 * 109.47053 * 59.99984 * 9 8 7 44 44 H 0.96994 * 120.00434 * 180.02562 * 13 12 10 45 45 H 1.08994 * 109.49794 * 57.68795 * 22 21 20 46 46 H 1.09002 * 109.49560 * 297.56605 * 22 21 20 47 47 H 1.09002 * 109.50219 * 296.91654 * 23 22 21 48 48 H 1.08997 * 109.50934 * 176.77985 * 23 22 21 49 49 H 1.08993 * 109.47208 * 300.19318 * 27 25 24 50 50 H 1.09000 * 109.47028 * 60.19416 * 27 25 24 51 51 H 1.09002 * 109.47604 * 180.19158 * 27 25 24 52 52 H 1.09001 * 109.50648 * 62.45464 * 28 21 20 53 53 H 1.08998 * 109.50518 * 302.36909 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6773 -2.1388 1.1770 6 6 0.5036 -2.7122 1.5811 7 6 -0.6749 -1.9992 2.1925 8 6 -0.5150 -1.9614 3.7136 9 6 -1.7111 -1.2370 4.3343 10 6 -1.5533 -1.1992 5.8326 11 1 -0.6864 -1.6467 6.2957 12 6 -2.5158 -0.5932 6.6121 13 7 -3.5717 -0.0487 6.0482 14 14 -2.3205 -0.5470 8.4693 15 1 -1.0554 -1.2247 8.8510 16 1 -2.2831 0.8649 8.9280 17 1 -3.4673 -1.2439 9.1051 18 7 0.5951 -3.9903 1.3447 19 7 1.7362 -4.2606 0.8184 20 6 2.4393 -3.1603 0.6893 21 7 3.7171 -3.0563 0.1631 22 6 3.7243 -2.2182 -1.0458 23 6 5.1606 -2.0823 -1.5582 24 8 5.7007 -3.3846 -1.7992 25 6 5.7100 -4.2268 -0.6434 26 1 6.3320 -3.7764 0.1302 27 6 6.2723 -5.6002 -1.0156 28 6 4.2793 -4.3844 -0.1217 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.5888 -0.2755 2.1357 37 1 3.1243 -0.6261 1.3065 38 1 -0.7234 -0.9809 1.8068 39 1 -1.5926 -2.5286 1.9366 40 1 -0.4664 -2.9797 4.0993 41 1 0.4029 -1.4319 3.9694 42 1 -1.7593 -0.2186 3.9486 43 1 -2.6291 -1.7662 4.0785 44 1 -4.2486 0.3779 6.5965 45 1 3.3284 -1.2313 -0.8067 46 1 3.1063 -2.6827 -1.8141 47 1 5.7666 -1.5696 -0.8112 48 1 5.1636 -1.5098 -2.4857 49 1 5.6509 -6.0495 -1.7902 50 1 7.2909 -5.4874 -1.3868 51 1 6.2758 -6.2423 -0.1348 52 1 3.6701 -4.8836 -0.8752 53 1 4.2884 -4.9793 0.7915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344463552.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:35 Heat of formation + Delta-G solvation = 5.576255 kcal Electronic energy + Delta-G solvation = -30723.174825 eV Core-core repulsion = 26823.203173 eV Total energy + Delta-G solvation = -3899.971651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.20007 -40.82446 -38.32880 -37.30137 -36.35986 -34.51657 -34.22384 -33.82932 -31.58167 -30.01091 -28.51281 -28.14068 -27.84702 -26.98147 -25.55734 -24.14129 -22.70262 -22.59530 -22.06545 -21.37483 -20.77060 -18.75231 -18.39302 -17.60976 -17.57033 -17.32878 -16.65293 -16.56391 -16.36822 -15.86873 -15.75869 -15.50986 -15.36199 -15.17154 -14.84019 -14.35728 -14.08520 -13.91693 -13.75598 -13.52792 -13.27604 -13.19649 -13.03323 -12.97497 -12.83626 -12.70820 -12.68283 -12.56948 -12.43168 -12.41676 -12.22463 -11.97569 -11.84582 -11.80562 -11.53506 -11.50480 -11.36533 -11.22684 -11.22147 -10.82478 -10.57515 -10.55056 -9.44174 -8.20167 -6.30105 0.65221 1.10794 1.38813 1.40465 1.52691 1.69087 2.39931 2.41866 2.71370 3.13357 3.28134 3.47533 3.58067 3.60888 3.66918 3.75544 3.80758 3.99771 4.04698 4.07468 4.14784 4.21214 4.29116 4.31356 4.32135 4.39018 4.49581 4.55475 4.58012 4.65731 4.70309 4.73105 4.76225 4.84358 4.87604 4.92558 4.98466 5.00273 5.01433 5.06104 5.12615 5.14251 5.26429 5.28404 5.34731 5.41052 5.47006 5.51142 5.72517 5.84552 6.05336 6.11007 6.25328 6.85390 7.38659 7.65911 8.91410 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.002667 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.338742 B =10497.641439 C =11343.909760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.098 3.902 5 N -0.466 5.466 6 C 0.203 3.797 7 C -0.036 4.036 8 C -0.085 4.085 9 C 0.030 3.970 10 C -0.543 4.543 11 H 0.053 0.947 12 C 0.005 3.995 13 N -0.928 5.928 14 Si 0.959 3.041 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.279 1.279 18 N -0.328 5.328 19 N -0.356 5.356 20 C 0.351 3.649 21 N -0.445 5.445 22 C 0.006 3.994 23 C 0.069 3.931 24 O -0.393 6.393 25 C 0.095 3.905 26 H 0.079 0.921 27 C -0.142 4.142 28 C 0.044 3.956 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.007 0.993 43 H -0.005 1.005 44 H 0.264 0.736 45 H 0.113 0.887 46 H 0.042 0.958 47 H 0.077 0.923 48 H 0.131 0.869 49 H 0.059 0.941 50 H 0.079 0.921 51 H 0.085 0.915 52 H 0.047 0.953 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.176 1.596 -18.955 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.126 4.126 3 C -0.199 4.199 4 C -0.023 4.023 5 N -0.159 5.159 6 C -0.066 4.066 7 C -0.075 4.075 8 C -0.124 4.124 9 C -0.007 4.007 10 C -0.581 4.581 11 H 0.071 0.929 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.784 3.216 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.205 1.205 18 N -0.166 5.166 19 N -0.201 5.201 20 C -0.007 4.007 21 N -0.170 5.170 22 C -0.120 4.120 23 C -0.008 4.008 24 O -0.312 6.312 25 C 0.037 3.963 26 H 0.097 0.903 27 C -0.199 4.199 28 C -0.084 4.084 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.014 0.986 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.149 0.851 49 H 0.078 0.922 50 H 0.098 0.902 51 H 0.104 0.896 52 H 0.065 0.935 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.056 0.395 -18.831 28.251 hybrid contribution -0.911 0.771 1.041 1.583 sum 20.145 1.166 -17.790 26.901 Atomic orbital electron populations 1.22182 0.95234 1.01355 1.03264 1.21635 0.96459 0.98273 0.96242 1.21776 1.02141 0.92593 1.03366 1.22482 1.03532 0.74812 1.01471 1.46291 1.13031 1.09915 1.46704 1.24957 0.89873 0.90399 1.01382 1.20493 0.91222 1.00745 0.95084 1.21355 0.99233 0.99647 0.92144 1.18957 0.92743 0.94678 0.94339 1.21658 1.06513 1.36301 0.93601 0.92896 1.25870 0.94877 0.94980 1.03624 1.70069 1.11019 1.38555 1.37200 0.85491 0.78266 0.78080 0.79780 1.19102 1.19978 1.20521 1.73922 1.12795 1.12654 1.17272 1.74453 1.00633 1.23221 1.21756 1.22736 0.91366 0.85151 1.01430 1.59053 1.11032 1.17127 1.29779 1.23460 1.01113 0.98761 0.88709 1.22854 0.89840 0.84821 1.03265 1.88010 1.83065 1.25307 1.34826 1.22284 0.92707 0.93321 0.88006 0.90304 1.21755 1.02019 0.93104 1.03051 1.22809 0.96603 0.86996 1.01963 0.94140 0.91711 0.90608 0.90063 0.90489 0.90746 0.92074 0.88200 0.86409 0.87153 0.89280 0.94330 0.93004 0.97443 0.98620 0.92702 0.86883 0.93954 0.90455 0.85140 0.92219 0.90192 0.89589 0.93461 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 7.50 71.98 0.54 -2.59 16 2 C -0.11 -1.62 2.60 -10.79 -0.03 -1.65 16 3 C -0.14 -1.44 9.19 71.98 0.66 -0.78 16 4 C 0.10 1.91 4.48 86.38 0.39 2.30 16 5 N -0.47 -12.88 2.69 -514.87 -1.38 -14.27 16 6 C 0.20 6.94 6.15 137.64 0.85 7.79 16 7 C -0.04 -1.24 4.79 29.85 0.14 -1.10 16 8 C -0.08 -3.53 5.13 30.59 0.16 -3.37 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 11 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 12 C 0.00 0.26 5.46 84.66 0.46 0.73 16 13 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 14 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 N -0.33 -13.04 12.18 -49.53 -0.60 -13.64 16 19 N -0.36 -13.09 11.35 -58.01 -0.66 -13.75 16 20 C 0.35 10.30 7.12 260.11 1.85 12.15 16 21 N -0.45 -9.84 4.76 -704.85 -3.35 -13.20 16 22 C 0.01 0.10 5.34 86.30 0.46 0.56 16 23 C 0.07 0.81 7.01 72.02 0.50 1.31 16 24 O -0.39 -6.53 10.47 -148.98 -1.56 -8.09 16 25 C 0.09 1.49 3.42 30.63 0.10 1.60 16 26 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 27 C -0.14 -1.76 9.57 71.98 0.69 -1.07 16 28 C 0.04 0.93 4.29 86.31 0.37 1.30 16 29 H 0.04 0.96 5.48 -2.39 -0.01 0.95 16 30 H 0.06 1.33 7.03 -2.39 -0.02 1.31 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.17 5.74 -2.39 -0.01 1.15 16 33 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 2.10 8.02 -2.39 -0.02 2.08 16 37 H 0.12 1.82 7.87 -2.39 -0.02 1.80 16 38 H 0.11 3.30 4.29 -2.39 -0.01 3.29 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 44 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.11 1.47 3.70 -2.39 -0.01 1.46 16 46 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.05 1.16 8.11 -2.39 -0.02 1.14 16 53 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 Total: -1.00 -73.16 406.43 3.16 -70.00 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.88 Total: 13.51 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 7.53 Total: -11.67 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -5.71 Total: -109.93 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.56 Total: -8.09 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.16 3.16 -70.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344463552.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.574 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds