Wall clock time and date at job start Sat Apr 11 2020 04:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99838 * 2 1 4 4 C 1.52999 * 109.47220 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.46969 * 239.99805 * 3 2 1 6 6 C 1.52994 * 109.47438 * 119.99641 * 3 2 1 7 7 C 1.50702 * 109.47460 * 177.76505 * 6 3 2 8 8 N 1.30298 * 126.34182 * 83.88217 * 7 6 3 9 9 N 1.28525 * 110.05002 * 180.02562 * 8 7 6 10 10 C 1.31222 * 109.86190 * 359.97438 * 9 8 7 11 11 N 1.38580 * 126.47261 * 179.97438 * 10 9 8 12 12 C 1.46903 * 110.99720 * 107.56921 * 11 10 9 13 13 C 1.50704 * 109.47113 * 305.06066 * 12 11 10 14 14 H 1.08005 * 119.99539 * 4.58263 * 13 12 11 15 15 C 1.37868 * 120.00187 * 184.57965 * 13 12 11 16 16 N 1.31519 * 120.00275 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47335 * 90.00272 * 17 15 13 19 19 H 1.48507 * 109.46853 * 209.99933 * 17 15 13 20 20 H 1.48494 * 109.47049 * 329.99886 * 17 15 13 21 21 C 1.46899 * 111.00442 * 343.61326 * 11 10 9 22 22 C 1.52997 * 109.47261 * 195.95093 * 21 11 10 23 23 O 1.42907 * 109.46987 * 63.52331 * 22 21 11 24 24 C 1.42894 * 114.00047 * 179.97438 * 23 22 21 25 25 N 1.36452 * 107.05202 * 359.73922 * 10 9 8 26 26 C 1.46502 * 127.14015 * 180.26083 * 25 10 9 27 27 C 1.52999 * 109.46928 * 95.98813 * 26 25 10 28 28 H 1.08001 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00002 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99957 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47313 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47298 * 300.00654 * 4 3 2 33 33 H 1.09007 * 109.46985 * 60.00049 * 4 3 2 34 34 H 1.09004 * 109.46974 * 303.67855 * 5 3 2 35 35 H 1.09000 * 109.47034 * 63.67210 * 5 3 2 36 36 H 1.08994 * 109.47151 * 183.67779 * 5 3 2 37 37 H 1.08999 * 109.46939 * 297.77020 * 6 3 2 38 38 H 1.09002 * 109.47232 * 57.76625 * 6 3 2 39 39 H 1.09000 * 109.47261 * 65.06019 * 12 11 10 40 40 H 1.09004 * 109.47053 * 185.06255 * 12 11 10 41 41 H 0.96995 * 120.00338 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.46800 * 315.95168 * 21 11 10 43 43 H 1.08994 * 109.47087 * 75.95213 * 21 11 10 44 44 H 1.08995 * 109.47148 * 183.52183 * 22 21 11 45 45 H 1.08993 * 109.47386 * 303.52299 * 22 21 11 46 46 H 1.09001 * 109.47320 * 300.00031 * 24 23 22 47 47 H 1.09001 * 109.47081 * 60.00199 * 24 23 22 48 48 H 1.09001 * 109.47214 * 180.02562 * 24 23 22 49 49 H 1.08998 * 109.47579 * 215.99319 * 26 25 10 50 50 H 1.09002 * 109.46444 * 335.99542 * 26 25 10 51 51 H 1.09001 * 109.47666 * 306.84292 * 27 26 25 52 52 H 1.09003 * 109.46652 * 66.84694 * 27 26 25 53 53 H 1.08994 * 109.47089 * 186.83790 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9430 1.3863 1.2492 7 6 3.7377 2.6665 1.2218 8 7 3.3287 3.8379 1.6198 9 7 4.2594 4.7088 1.4553 10 6 5.3210 4.1350 0.9399 11 7 6.5196 4.7539 0.6224 12 6 7.5748 4.3761 1.5721 13 6 7.1182 4.6776 2.9763 14 1 6.1152 5.0372 3.1525 15 6 7.9809 4.4942 4.0360 16 7 9.2025 4.0566 3.8215 17 14 7.4147 4.8672 5.7767 18 1 6.8162 3.6468 6.3748 19 1 8.5772 5.2996 6.5933 20 1 6.4007 5.9516 5.7456 21 6 6.3600 6.2131 0.5658 22 6 7.5581 6.8294 -0.1591 23 8 7.5844 6.3695 -1.5119 24 6 8.6705 6.8893 -2.2814 25 7 5.0236 2.8129 0.7806 26 6 5.8989 1.7677 0.2442 27 6 6.5829 1.0331 1.3989 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.6142 3.4120 -0.0002 32 1 0.4428 2.4101 -0.8908 33 1 0.4422 2.4105 0.8892 34 1 3.6070 0.5223 -1.2827 35 1 2.3121 1.3941 -2.1380 36 1 3.5368 2.2996 -1.2169 37 1 2.3133 1.3685 2.1387 38 1 3.6247 0.5360 1.2696 39 1 7.7832 3.3103 1.4787 40 1 8.4796 4.9437 1.3545 41 1 9.8095 3.9280 4.5670 42 1 5.4443 6.4577 0.0274 43 1 6.3037 6.6119 1.5786 44 1 7.4709 7.9158 -0.1463 45 1 8.4787 6.5329 0.3434 46 1 8.6060 7.9769 -2.3127 47 1 9.6144 6.5943 -1.8231 48 1 8.6194 6.4933 -3.2957 49 1 5.3068 1.0604 -0.3365 50 1 6.6552 2.2209 -0.3968 51 1 7.0752 1.7564 2.0490 52 1 5.8372 0.4799 1.9700 53 1 7.3233 0.3396 1.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352294077.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:19 Heat of formation + Delta-G solvation = 56.490155 kcal Electronic energy + Delta-G solvation = -31639.726936 eV Core-core repulsion = 27741.963077 eV Total energy + Delta-G solvation = -3897.763859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.28643 -38.25634 -37.77550 -36.30728 -35.05946 -32.66117 -31.87286 -30.08594 -29.78913 -28.96849 -27.29204 -27.21979 -26.15969 -25.61733 -23.55069 -23.19435 -22.36683 -21.72267 -19.69735 -19.50977 -18.11190 -17.02643 -16.34483 -16.11333 -16.05099 -15.82046 -15.34551 -14.80278 -14.74168 -14.52375 -14.37175 -14.15112 -13.89401 -13.53396 -13.18281 -12.91188 -12.89195 -12.53870 -12.21199 -12.18095 -12.01770 -11.70403 -11.64248 -11.51603 -11.37788 -11.16248 -11.12053 -11.01542 -10.94397 -10.88117 -10.62343 -10.52995 -10.44034 -10.39995 -10.23572 -9.87752 -9.56199 -9.46994 -9.36504 -9.20268 -8.63984 -8.54288 -7.31171 -6.17025 -4.24327 2.18587 2.57229 3.00760 3.24345 3.31118 3.39181 3.67634 4.22741 4.35381 4.53895 4.65800 4.75456 4.95654 4.97466 5.12147 5.16820 5.21345 5.27190 5.36705 5.45639 5.49151 5.52900 5.57025 5.68314 5.72568 5.73455 5.78146 5.81002 5.85707 5.90505 5.93553 5.95977 5.98236 6.05122 6.07890 6.10537 6.22006 6.27474 6.48141 6.50455 6.55597 6.61731 6.64730 6.74274 6.80658 7.05765 7.31410 7.37065 7.52696 7.71941 7.80022 8.02234 8.23883 8.86634 9.43934 9.60474 10.88849 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.004443 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.303128 B = 6301.180765 C = 7870.787895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C -0.032 4.032 4 C -0.142 4.142 5 C -0.140 4.140 6 C -0.011 4.011 7 C 0.158 3.842 8 N -0.286 5.286 9 N -0.340 5.340 10 C 0.415 3.585 11 N -0.460 5.460 12 C 0.186 3.814 13 C -0.553 4.553 14 H 0.070 0.930 15 C 0.071 3.929 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.081 3.919 22 C 0.067 3.933 23 O -0.379 6.379 24 C 0.032 3.968 25 N -0.470 5.470 26 C 0.110 3.890 27 C -0.176 4.176 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.033 0.967 47 H 0.038 0.962 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.054 0.946 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 -6.153 -11.010 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.159 4.159 3 C -0.033 4.033 4 C -0.199 4.199 5 C -0.197 4.197 6 C -0.051 4.051 7 C -0.110 4.110 8 N -0.125 5.125 9 N -0.185 5.185 10 C 0.058 3.942 11 N -0.183 5.183 12 C 0.062 3.938 13 C -0.592 4.592 14 H 0.088 0.912 15 C -0.132 4.132 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.046 4.046 22 C -0.010 4.010 23 O -0.298 6.298 24 C -0.065 4.065 25 N -0.165 5.165 26 C -0.013 4.013 27 C -0.234 4.234 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.096 0.904 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.107 0.893 52 H 0.073 0.927 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.046 -5.390 -10.903 14.583 hybrid contribution 0.957 -0.521 1.400 1.774 sum -7.089 -5.912 -9.503 13.248 Atomic orbital electron populations 1.24010 0.96171 1.02025 1.01170 1.22884 0.95894 0.97352 0.99738 1.19624 0.95259 0.93641 0.94760 1.21954 0.98521 0.98358 1.01089 1.21924 0.99253 1.01904 0.96615 1.19908 0.96137 0.90231 0.98786 1.24092 0.83982 0.98152 1.04760 1.73791 1.23366 0.97016 1.18373 1.74603 0.99467 1.24695 1.19690 1.22428 0.94484 0.81653 0.95596 1.59220 1.01616 1.08580 1.48925 1.20120 0.88304 0.97593 0.87759 1.21856 0.99848 1.45622 0.91853 0.91208 1.24877 0.94603 0.94591 0.99155 1.69930 1.05632 1.45469 1.31858 0.86617 0.78334 0.79024 0.84359 1.20702 1.21116 1.19546 1.21873 0.96992 0.85555 1.00201 1.22673 0.99552 0.96546 0.82223 1.87971 1.48111 1.70863 1.22839 1.22652 0.90282 0.97505 0.96047 1.46011 1.12171 1.08522 1.49766 1.21782 0.93510 0.89030 0.97008 1.22289 1.00817 1.01461 0.98855 0.87720 0.88844 0.87505 0.91079 0.93066 0.92217 0.92668 0.92517 0.92104 0.88985 0.90482 0.94383 0.93360 0.92713 0.90817 0.90264 0.93317 0.92239 0.94853 0.94332 0.90375 0.89809 0.88427 0.89257 0.92709 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 13.70 29.01 0.40 -1.39 16 2 C -0.14 -1.37 8.76 -36.02 -0.32 -1.68 16 3 C -0.03 -0.37 0.77 -155.66 -0.12 -0.49 16 4 C -0.14 -1.78 6.86 37.16 0.25 -1.52 16 5 C -0.14 -1.60 7.26 37.16 0.27 -1.33 16 6 C -0.01 -0.14 4.64 -27.88 -0.13 -0.27 16 7 C 0.16 2.81 5.34 -154.02 -0.82 1.99 16 8 N -0.29 -6.04 11.05 32.99 0.36 -5.68 16 9 N -0.34 -7.82 10.80 30.32 0.33 -7.49 16 10 C 0.41 8.93 5.59 -318.87 -1.78 7.15 16 11 N -0.46 -9.81 4.58 -175.88 -0.81 -10.62 16 12 C 0.19 4.44 4.99 -4.97 -0.02 4.41 16 13 C -0.55 -14.70 7.54 -34.44 -0.26 -14.96 16 14 H 0.07 1.98 6.46 -52.48 -0.34 1.64 16 15 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 16 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.08 1.63 4.74 -3.83 -0.02 1.61 16 22 C 0.07 1.16 6.08 37.16 0.23 1.39 16 23 O -0.38 -6.53 10.63 -35.23 -0.37 -6.90 16 24 C 0.03 0.42 11.01 101.05 1.11 1.53 16 25 N -0.47 -8.63 2.38 -114.08 -0.27 -8.90 16 26 C 0.11 1.65 5.65 -4.04 -0.02 1.62 16 27 C -0.18 -2.70 9.97 37.16 0.37 -2.33 16 28 H 0.10 0.96 5.69 -52.49 -0.30 0.66 16 29 H 0.09 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.11 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.07 1.10 6.49 -51.93 -0.34 0.76 16 32 H 0.05 0.57 7.50 -51.93 -0.39 0.18 16 33 H 0.06 0.73 7.50 -51.92 -0.39 0.34 16 34 H 0.05 0.55 7.14 -51.93 -0.37 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.85 6.41 -51.93 -0.33 0.52 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 39 H 0.04 0.94 5.18 -51.93 -0.27 0.67 16 40 H 0.05 1.22 6.37 -51.93 -0.33 0.89 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.07 1.47 7.78 -51.93 -0.40 1.06 16 43 H 0.08 1.73 6.94 -51.93 -0.36 1.37 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.10 6.50 -51.93 -0.34 0.76 16 46 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.08 1.00 5.87 -51.93 -0.30 0.69 16 50 H 0.10 1.52 8.09 -51.93 -0.42 1.10 16 51 H 0.09 1.80 6.13 -51.93 -0.32 1.48 16 52 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 53 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 408.73 15.07 6.16 6.16 Total: -1.00 -30.75 408.73 -8.78 -39.53 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.94 Total: 3.65 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.96 Total: -2.45 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.35 Total: -56.62 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.37 Total: -6.90 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.75 -8.78 -39.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352294077.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.019 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds