Wall clock time and date at job start Sat Apr 11 2020 04:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 C 1.53001 * 109.47165 * 120.00086 * 2 1 3 5 5 N 1.46490 * 109.47155 * 174.43336 * 4 2 1 6 6 C 1.36741 * 127.14123 * 95.70221 * 5 4 2 7 7 C 1.50697 * 126.34512 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47409 * 89.99922 * 7 6 5 9 9 C 1.50697 * 109.47409 * 180.02562 * 8 7 6 10 10 H 1.08008 * 119.99525 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00337 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00177 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47354 * 60.00215 * 13 11 9 15 15 H 1.48502 * 109.47291 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47261 * 299.99989 * 13 11 9 17 17 N 1.30297 * 107.30280 * 179.97438 * 6 5 4 18 18 N 1.28525 * 110.05768 * 0.02562 * 17 6 5 19 19 C 1.31218 * 109.86140 * 359.73886 * 18 17 6 20 20 N 1.38571 * 126.47592 * 180.25859 * 19 18 17 21 21 C 1.46899 * 111.00023 * 298.35351 * 20 19 18 22 22 C 1.53007 * 109.47359 * 195.37977 * 21 20 19 23 23 H 1.09001 * 109.46770 * 305.00112 * 22 21 20 24 24 C 1.52996 * 109.47141 * 185.00167 * 22 21 20 25 25 O 1.42898 * 109.46913 * 64.99652 * 22 21 20 26 26 C 1.46899 * 111.00205 * 62.30341 * 20 19 18 27 27 C 1.53007 * 117.49747 * 124.66550 * 26 20 19 28 28 C 1.52998 * 60.00151 * 252.51358 * 27 26 20 29 29 H 1.09001 * 109.47144 * 59.99720 * 1 2 3 30 30 H 1.09003 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47298 * 300.00135 * 1 2 3 32 32 H 1.09001 * 109.47235 * 240.00384 * 2 1 3 33 33 H 1.08997 * 109.47631 * 299.99642 * 3 2 1 34 34 H 1.09006 * 109.47480 * 59.99893 * 3 2 1 35 35 H 1.09003 * 109.47186 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46686 * 294.43313 * 4 2 1 37 37 H 1.09000 * 109.46707 * 54.42804 * 4 2 1 38 38 H 1.09003 * 109.46802 * 210.00134 * 7 6 5 39 39 H 1.08995 * 109.46769 * 329.99666 * 7 6 5 40 40 H 1.08997 * 109.46897 * 299.99704 * 8 7 6 41 41 H 1.08996 * 109.47129 * 59.99611 * 8 7 6 42 42 H 0.97001 * 120.00372 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.46971 * 315.37565 * 21 20 19 44 44 H 1.09002 * 109.47293 * 75.37871 * 21 20 19 45 45 H 1.09003 * 109.46796 * 180.02562 * 24 22 21 46 46 H 1.09001 * 109.47244 * 299.99655 * 24 22 21 47 47 H 1.08998 * 109.47526 * 59.99903 * 24 22 21 48 48 H 0.96698 * 113.99811 * 179.97438 * 25 22 21 49 49 H 1.08996 * 115.55565 * 270.38061 * 26 20 19 50 50 H 1.08996 * 117.49668 * 0.02562 * 27 26 20 51 51 H 1.08997 * 117.49368 * 145.02593 * 27 26 20 52 52 H 1.08997 * 117.50435 * 252.50684 * 28 27 26 53 53 H 1.09010 * 117.49688 * 107.48801 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4987 -0.8384 1.1841 6 6 4.4203 -0.0031 1.7523 7 6 4.1254 1.2256 2.5736 8 6 4.0151 0.8381 4.0496 9 6 3.7196 2.0667 4.8708 10 1 3.6208 3.0278 4.3881 11 6 3.5754 1.9637 6.2380 12 7 3.6961 0.7934 6.8258 13 14 3.2098 3.4867 7.2560 14 1 1.9294 4.0883 6.8045 15 1 3.1026 3.1107 8.6886 16 1 4.3074 4.4721 7.0842 17 7 5.6005 -0.4670 1.4529 18 7 5.4882 -1.5300 0.7393 19 6 4.2199 -1.8068 0.5482 20 7 3.7092 -2.8783 -0.1668 21 6 4.1263 -2.8189 -1.5741 22 6 3.2584 -3.7672 -2.4038 23 1 3.3062 -4.7696 -1.9782 24 6 3.7723 -3.7998 -3.8445 25 8 1.9051 -3.3084 -2.3909 26 6 4.1019 -4.1547 0.4452 27 6 2.9855 -5.1318 0.8195 28 6 3.7387 -4.3747 1.9151 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.7603 -0.1531 2.1364 37 1 1.5974 -1.7161 1.3004 38 1 4.9308 1.9491 2.4470 39 1 3.1854 1.6668 2.2425 40 1 3.2096 0.1147 4.1760 41 1 4.9551 0.3968 4.3806 42 1 3.5950 0.7210 7.7878 43 1 4.0090 -1.8008 -1.9451 44 1 5.1715 -3.1175 -1.6562 45 1 3.1536 -4.4751 -4.4357 46 1 3.7244 -2.7975 -4.2701 47 1 4.8045 -4.1498 -3.8543 48 1 1.2970 -3.8629 -2.8986 49 1 5.0424 -4.5764 0.0907 50 1 1.9598 -4.8276 0.6112 51 1 3.1915 -6.1966 0.7110 52 1 4.4400 -4.9414 2.5276 53 1 3.2083 -3.5722 2.4280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357972575.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:03 Heat of formation + Delta-G solvation = 21.557141 kcal Electronic energy + Delta-G solvation = -31329.590714 eV Core-core repulsion = 27430.312046 eV Total energy + Delta-G solvation = -3899.278668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.04349 -39.96070 -38.02994 -37.88809 -36.14677 -35.32054 -34.29318 -33.56854 -32.05892 -30.01831 -28.27219 -27.84175 -27.15456 -26.60980 -23.93964 -23.74597 -23.19819 -22.36503 -22.02643 -21.10741 -20.68809 -18.64459 -18.30889 -18.14613 -17.70166 -17.21133 -16.80282 -16.42978 -16.01063 -15.63667 -15.40170 -15.15376 -14.99843 -14.91681 -14.82620 -14.28300 -14.02439 -13.77572 -13.53175 -13.42580 -13.31020 -13.10452 -13.02032 -12.83916 -12.80912 -12.75872 -12.53684 -12.49386 -12.41468 -12.13718 -11.97884 -11.85940 -11.80262 -11.73714 -11.65562 -11.44319 -11.32527 -11.28675 -10.90927 -10.79198 -10.57320 -9.93327 -9.83707 -8.20795 -6.33615 0.73489 1.23576 1.42324 1.45813 1.53286 1.77059 2.41268 2.48866 2.77819 3.13172 3.34711 3.46297 3.58827 3.69676 3.75597 3.90183 3.92998 3.94941 4.08340 4.10634 4.14636 4.21090 4.29047 4.36251 4.41634 4.47953 4.59588 4.61672 4.67106 4.68757 4.72160 4.77141 4.78453 4.81517 4.92941 4.96558 4.96838 4.98843 5.01802 5.10842 5.15627 5.19265 5.30242 5.33987 5.39216 5.42458 5.56595 5.57752 5.76050 5.76775 6.14446 6.23951 6.81478 7.06274 7.36412 7.71244 8.91175 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003299 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.968669 B = 8484.388750 C = 9133.055401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 C -0.152 4.152 4 C 0.114 3.886 5 N -0.453 5.453 6 C 0.203 3.797 7 C -0.018 4.018 8 C 0.047 3.953 9 C -0.540 4.540 10 H 0.072 0.928 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.260 1.260 15 H -0.286 1.286 16 H -0.268 1.268 17 N -0.335 5.335 18 N -0.346 5.346 19 C 0.346 3.654 20 N -0.417 5.417 21 C 0.078 3.922 22 C 0.120 3.880 23 H 0.073 0.927 24 C -0.180 4.180 25 O -0.570 6.570 26 C 0.003 3.997 27 C -0.115 4.115 28 C -0.193 4.193 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.095 0.905 40 H -0.008 1.008 41 H -0.019 1.019 42 H 0.264 0.736 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.390 0.610 49 H 0.108 0.892 50 H 0.105 0.895 51 H 0.129 0.871 52 H 0.100 0.900 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 -11.839 -22.098 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.008 4.008 5 N -0.144 5.144 6 C -0.065 4.065 7 C -0.058 4.058 8 C 0.008 3.992 9 C -0.578 4.578 10 H 0.090 0.910 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.792 3.208 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.193 1.193 17 N -0.175 5.175 18 N -0.189 5.189 19 C -0.011 4.011 20 N -0.143 5.143 21 C -0.049 4.049 22 C 0.061 3.939 23 H 0.091 0.909 24 C -0.238 4.238 25 O -0.378 6.378 26 C -0.105 4.105 27 C -0.153 4.153 28 C -0.230 4.230 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.010 0.990 41 H -0.001 1.001 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.239 0.761 49 H 0.126 0.874 50 H 0.124 0.876 51 H 0.147 0.853 52 H 0.119 0.881 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.594 -11.539 -21.639 25.672 hybrid contribution -0.317 0.321 0.860 0.971 sum -7.910 -11.218 -20.779 24.903 Atomic orbital electron populations 1.21680 0.91664 1.02861 1.02906 1.21315 0.98055 0.95728 0.95980 1.21963 0.99782 0.96100 1.03038 1.22190 0.74070 1.03614 1.00937 1.46420 1.09327 1.20070 1.38589 1.25242 0.85039 0.97289 0.98957 1.20230 1.03115 0.89214 0.93227 1.18794 0.94551 0.96088 0.89727 1.21537 1.48755 0.94848 0.92651 0.91000 1.25989 0.94848 0.99297 0.99441 1.70118 1.50721 1.25902 1.10612 0.85463 0.79434 0.78950 0.76996 1.18451 1.21208 1.19255 1.73916 1.21546 1.07282 1.14786 1.74395 1.16215 1.11245 1.17088 1.22456 0.86348 0.92840 0.99433 1.58558 1.56842 0.97163 1.01707 1.22267 0.97840 1.00960 0.83860 1.21603 0.82235 0.96035 0.94039 0.90943 1.22449 1.02784 1.02914 0.95701 1.86586 1.18223 1.56504 1.76479 1.22602 0.99859 0.90515 0.97558 1.23200 0.96746 0.97480 0.97827 1.22969 1.04918 1.03720 0.91418 0.90797 0.91533 0.92194 0.90980 0.90631 0.91889 0.95112 0.89370 0.88096 0.89644 0.88633 0.99008 1.00063 0.92773 0.92091 0.91819 0.89795 0.92727 0.91101 0.76057 0.87427 0.87643 0.85328 0.88119 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.19 71.98 0.66 -1.77 16 2 C -0.09 -2.18 3.12 -10.80 -0.03 -2.22 16 3 C -0.15 -3.81 7.90 71.98 0.57 -3.24 16 4 C 0.11 3.34 5.36 86.38 0.46 3.80 16 5 N -0.45 -16.29 2.52 -514.87 -1.30 -17.59 16 6 C 0.20 8.66 6.20 137.64 0.85 9.52 16 7 C -0.02 -0.79 5.01 29.85 0.15 -0.64 16 8 C 0.05 2.52 4.95 29.85 0.15 2.67 16 9 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 10 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 11 C 0.00 0.14 5.46 84.65 0.46 0.60 16 12 N -0.93 -57.32 13.29 21.44 0.28 -57.04 16 13 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 N -0.34 -15.62 12.18 -49.54 -0.60 -16.22 16 18 N -0.35 -14.56 12.19 -58.00 -0.71 -15.26 16 19 C 0.35 12.21 5.68 260.11 1.48 13.68 16 20 N -0.42 -11.11 4.58 -682.06 -3.13 -14.24 16 21 C 0.08 1.75 4.55 86.31 0.39 2.14 16 22 C 0.12 1.75 3.63 30.60 0.11 1.86 16 23 H 0.07 0.90 7.27 -2.39 -0.02 0.88 16 24 C -0.18 -1.92 9.53 71.98 0.69 -1.23 16 25 O -0.57 -8.75 13.27 -148.98 -1.98 -10.73 16 26 C 0.00 0.06 4.36 44.92 0.20 0.26 16 27 C -0.11 -2.03 10.27 30.60 0.31 -1.71 16 28 C -0.19 -5.07 9.85 30.60 0.30 -4.77 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.59 7.29 -2.38 -0.02 1.58 16 35 H 0.03 0.91 6.47 -2.39 -0.02 0.90 16 36 H 0.09 2.80 7.60 -2.39 -0.02 2.78 16 37 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.10 3.66 5.55 -2.39 -0.01 3.65 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 41 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 42 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.06 1.61 7.98 -2.39 -0.02 1.59 16 44 H 0.06 1.44 7.94 -2.39 -0.02 1.43 16 45 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.39 2.49 9.08 -74.06 -0.67 1.82 16 49 H 0.11 2.41 7.95 -2.39 -0.02 2.39 16 50 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 53 H 0.06 2.07 7.98 -2.38 -0.02 2.05 16 Total: -1.00 -75.11 426.35 1.79 -73.32 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.21 Total: 23.03 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 6.98 Total: -11.04 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.45 Total: -120.35 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.98 Total: -10.73 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -75.11 1.79 -73.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357972575.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.872 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds