Wall clock time and date at job start Sat Apr 11 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47022 * 2 1 4 4 C 1.50703 * 109.46723 * 119.99431 * 2 1 3 5 5 H 1.08006 * 119.99852 * 120.00136 * 4 2 1 6 6 C 1.37876 * 120.00071 * 299.99770 * 4 2 1 7 7 N 1.31510 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99791 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47171 * 60.00321 * 8 6 4 10 10 H 1.48502 * 109.47241 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47032 * 300.00238 * 8 6 4 12 12 N 1.46895 * 109.47506 * 239.99484 * 2 1 3 13 13 C 1.46902 * 110.99749 * 306.04851 * 12 2 1 14 14 C 1.38580 * 110.99678 * 70.00017 * 12 2 1 15 15 N 1.31216 * 126.47838 * 3.63618 * 14 12 2 16 16 N 1.28530 * 109.86148 * 180.02562 * 15 14 12 17 17 C 1.30292 * 110.05398 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.34322 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.46908 * 299.65983 * 18 17 16 20 20 C 1.52997 * 109.46715 * 179.66497 * 18 17 16 21 21 C 1.52997 * 109.47455 * 59.66151 * 18 17 16 22 22 N 1.36458 * 126.47173 * 183.94563 * 14 12 2 23 23 C 1.46502 * 127.13763 * 359.97438 * 22 14 12 24 24 C 1.52996 * 109.46977 * 84.88198 * 23 22 14 25 25 O 1.42900 * 112.85177 * 15.77833 * 24 23 22 26 26 C 1.53785 * 113.61531 * 244.58157 * 24 23 22 27 27 C 1.53951 * 87.02070 * 220.04821 * 26 24 23 28 28 C 1.53781 * 87.11309 * 25.36039 * 27 26 24 29 29 H 1.08995 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47316 * 300.00935 * 1 2 3 31 31 H 1.08998 * 109.46882 * 60.00161 * 1 2 3 32 32 H 0.97000 * 120.00169 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.46724 * 205.61803 * 13 12 2 34 34 H 1.08994 * 109.47553 * 325.62028 * 13 12 2 35 35 H 1.09002 * 109.47122 * 85.62567 * 13 12 2 36 36 H 1.08996 * 109.47290 * 60.00565 * 19 18 17 37 37 H 1.08998 * 109.47689 * 300.00086 * 19 18 17 38 38 H 1.08999 * 109.47085 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.46906 * 161.97247 * 20 18 17 40 40 H 1.08997 * 109.46958 * 281.96776 * 20 18 17 41 41 H 1.08997 * 109.47699 * 41.97058 * 20 18 17 42 42 H 1.09001 * 109.47187 * 304.76113 * 21 18 17 43 43 H 1.09000 * 109.46556 * 64.75951 * 21 18 17 44 44 H 1.08998 * 109.47508 * 184.75873 * 21 18 17 45 45 H 1.09000 * 109.47498 * 204.88118 * 23 22 14 46 46 H 1.09001 * 109.47163 * 324.88005 * 23 22 14 47 47 H 0.96699 * 114.00058 * 303.61806 * 25 24 23 48 48 H 1.08997 * 113.61278 * 334.56934 * 26 24 23 49 49 H 1.09002 * 113.61191 * 105.47143 * 26 24 23 50 50 H 1.09005 * 113.53837 * 270.81271 * 27 26 24 51 51 H 1.09004 * 113.74500 * 139.94504 * 27 26 24 52 52 H 1.08991 * 113.61663 * 220.09043 * 28 27 26 53 53 H 1.09007 * 113.61121 * 89.18235 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8268 -0.4195 5.2206 11 1 1.8279 -2.5195 4.0084 12 7 2.0198 -0.6926 -1.1993 13 6 1.4344 -2.0355 -1.3076 14 6 1.7681 0.0524 -2.3404 15 7 1.2364 1.2510 -2.3881 16 7 1.1481 1.6414 -3.6095 17 6 1.6150 0.7228 -4.4069 18 6 1.6880 0.7983 -5.9103 19 6 0.2785 0.9648 -6.4816 20 6 2.3107 -0.4884 -6.4557 21 6 2.5489 1.9950 -6.3197 22 7 2.0212 -0.3245 -3.6273 23 6 2.6095 -1.5876 -4.0796 24 6 1.5117 -2.6461 -4.2032 25 8 0.1976 -2.0846 -4.2097 26 6 1.6749 -3.8203 -3.2236 27 6 1.2325 -4.7392 -4.3769 28 6 1.7552 -3.6569 -5.3363 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7087 1.1616 3.4843 33 1 2.1010 -2.6770 -1.8840 34 1 1.2993 -2.4545 -0.3105 35 1 0.4685 -1.9716 -1.8087 36 1 -0.1652 1.8814 -6.0930 37 1 -0.3349 0.1123 -6.1900 38 1 0.3312 1.0189 -7.5689 39 1 2.0792 -0.5827 -7.5167 40 1 3.3918 -0.4541 -6.3214 41 1 1.9047 -1.3451 -5.9178 42 1 2.1531 2.9012 -5.8611 43 1 3.5741 1.8364 -5.9851 44 1 2.5329 2.0999 -7.4045 45 1 3.0835 -1.4408 -5.0501 46 1 3.3553 -1.9202 -3.3576 47 1 -0.0006 -1.5386 -3.4367 48 1 2.7046 -3.9836 -2.9056 49 1 0.9725 -3.7947 -2.3905 50 1 0.1534 -4.8841 -4.4285 51 1 1.7884 -5.6753 -4.4302 52 1 1.1176 -3.4997 -6.2061 53 1 2.8070 -3.7755 -5.5969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381584452.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:19 Heat of formation + Delta-G solvation = 91.302629 kcal Electronic energy + Delta-G solvation = -32991.235404 eV Core-core repulsion = 29094.981128 eV Total energy + Delta-G solvation = -3896.254277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.17692 -41.01927 -39.27067 -37.74672 -35.89849 -35.46879 -34.66184 -31.06519 -30.64893 -29.97830 -28.28610 -28.16978 -27.66722 -27.29318 -25.78644 -24.50990 -23.55351 -22.89203 -21.22616 -20.52797 -20.39461 -18.70397 -18.34395 -17.71217 -17.19249 -16.86967 -16.52410 -16.24898 -15.94771 -15.80229 -15.65627 -15.14730 -15.03808 -14.79298 -14.61266 -14.37044 -14.19606 -13.54165 -13.30733 -13.18472 -13.11158 -13.02805 -12.94519 -12.73353 -12.71576 -12.60738 -12.55948 -12.43981 -12.20510 -12.17522 -12.10699 -12.02878 -11.93681 -11.81221 -11.60020 -11.49800 -11.19885 -11.09357 -10.88938 -10.58636 -10.50333 -10.40934 -8.94450 -8.13269 -6.28454 0.88995 1.31778 1.44403 1.46487 1.54257 1.96124 2.40885 2.81085 2.96890 3.16211 3.23812 3.32525 3.57484 3.65444 3.72014 3.80480 3.94329 3.99017 4.13207 4.21933 4.29037 4.31501 4.39091 4.50537 4.62001 4.65862 4.73914 4.75193 4.76907 4.80565 4.83772 4.88440 4.91743 4.95641 4.99139 5.03116 5.04649 5.07393 5.11806 5.12061 5.18246 5.22205 5.38533 5.39824 5.41321 5.48367 5.56463 5.63570 5.88267 6.08083 6.19207 6.29290 6.57959 6.80804 7.40432 7.95023 8.93259 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.004398 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.015995 B = 6364.971193 C = 7751.410100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.240 3.760 3 H 0.005 0.995 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.451 5.451 13 C 0.012 3.988 14 C 0.360 3.640 15 N -0.368 5.368 16 N -0.331 5.331 17 C 0.192 3.808 18 C 0.030 3.970 19 C -0.130 4.130 20 C -0.176 4.176 21 C -0.134 4.134 22 N -0.473 5.473 23 C 0.048 3.952 24 C 0.080 3.920 25 O -0.542 6.542 26 C -0.183 4.183 27 C -0.128 4.128 28 C -0.109 4.109 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.023 0.977 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.160 0.840 46 H 0.101 0.899 47 H 0.364 0.636 48 H 0.114 0.886 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.092 0.908 52 H 0.083 0.917 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -12.208 -22.385 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.134 3.866 3 H 0.023 0.977 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.174 5.174 13 C -0.133 4.133 14 C 0.003 3.997 15 N -0.212 5.212 16 N -0.168 5.168 17 C -0.077 4.077 18 C 0.027 3.973 19 C -0.188 4.188 20 C -0.233 4.233 21 C -0.192 4.192 22 N -0.169 5.169 23 C -0.073 4.073 24 C 0.038 3.962 25 O -0.348 6.348 26 C -0.221 4.221 27 C -0.166 4.166 28 C -0.146 4.146 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.177 0.823 46 H 0.119 0.881 47 H 0.213 0.787 48 H 0.132 0.868 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.111 0.889 52 H 0.101 0.899 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.273 -11.187 -22.235 25.254 hybrid contribution -0.288 -0.254 1.919 1.957 sum 3.985 -11.441 -20.316 23.654 Atomic orbital electron populations 1.22107 0.99345 0.98820 1.00318 1.18963 0.90611 0.92792 0.84247 0.97721 1.21243 1.31803 1.13134 0.90042 0.91212 1.25777 0.95062 0.95644 1.02138 1.70074 1.37260 1.24076 1.24342 0.85454 0.78677 0.78739 0.77801 1.19612 1.21365 1.18836 1.59223 1.55649 1.03925 0.98580 1.23662 0.97322 0.87981 1.04367 1.23217 0.97995 0.93619 0.84892 1.74725 1.21901 1.11399 1.13175 1.73816 1.20853 1.25887 0.96207 1.25326 1.00453 0.84687 0.97255 1.19133 0.98472 0.98758 0.80913 1.21815 0.93563 1.01442 1.01957 1.22767 1.00831 0.95833 1.03843 1.21888 0.98381 0.95891 1.03054 1.46142 1.49853 1.16653 1.04281 1.23972 0.97272 0.80089 1.06012 1.23003 0.81909 0.90436 1.00865 1.86453 1.31193 1.69169 1.48019 1.24205 1.03617 0.96248 0.97982 1.22751 1.01168 0.97843 0.94806 1.23169 1.03937 0.91723 0.95770 0.94785 0.91816 0.96144 0.92825 0.86509 0.90076 0.95833 0.93668 0.93356 0.88563 0.88415 0.90518 0.89899 0.93700 0.92826 0.88399 0.82301 0.88058 0.78727 0.86827 0.91126 0.91071 0.88907 0.89864 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.74 8.32 71.98 0.60 -7.14 16 2 C 0.24 12.81 1.99 44.17 0.09 12.90 16 3 H 0.00 0.30 7.70 -2.38 -0.02 0.29 16 4 C -0.52 -28.50 7.62 25.60 0.20 -28.31 16 5 H 0.07 3.61 7.40 -2.91 -0.02 3.59 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 12 N -0.45 -19.68 4.77 -710.98 -3.39 -23.08 16 13 C 0.01 0.43 4.98 127.69 0.64 1.06 16 14 C 0.36 15.22 5.94 260.11 1.55 16.77 16 15 N -0.37 -18.01 9.76 -58.00 -0.57 -18.57 16 16 N -0.33 -14.22 12.18 -49.54 -0.60 -14.82 16 17 C 0.19 6.29 6.34 137.64 0.87 7.16 16 18 C 0.03 0.66 0.99 -52.93 -0.05 0.61 16 19 C -0.13 -2.74 8.38 71.98 0.60 -2.14 16 20 C -0.18 -2.49 6.96 71.98 0.50 -1.99 16 21 C -0.13 -2.68 8.41 71.98 0.61 -2.07 16 22 N -0.47 -15.01 1.76 -514.86 -0.91 -15.91 16 23 C 0.05 1.02 4.60 86.38 0.40 1.41 16 24 C 0.08 1.54 0.19 -10.27 0.00 1.53 16 25 O -0.54 -14.51 12.67 -148.98 -1.89 -16.40 16 26 C -0.18 -3.23 4.70 31.18 0.15 -3.08 16 27 C -0.13 -1.75 8.02 31.18 0.25 -1.50 16 28 C -0.11 -1.29 6.32 31.12 0.20 -1.09 16 29 H 0.03 1.64 6.77 -2.39 -0.02 1.63 16 30 H 0.06 3.73 6.07 -2.39 -0.01 3.71 16 31 H 0.02 1.05 6.47 -2.39 -0.02 1.04 16 32 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.12 3.17 2.75 -2.44 -0.01 3.17 16 34 H 0.08 3.11 6.38 -2.39 -0.02 3.09 16 35 H 0.02 0.81 4.69 -2.39 -0.01 0.80 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 0.89 8.01 -2.39 -0.02 0.87 16 40 H 0.08 0.89 6.97 -2.39 -0.02 0.87 16 41 H 0.08 1.28 2.78 -2.39 -0.01 1.27 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.16 2.38 3.63 -2.39 -0.01 2.37 16 46 H 0.10 2.13 6.97 -2.39 -0.02 2.11 16 47 H 0.36 11.90 5.35 -74.06 -0.40 11.51 16 48 H 0.11 1.63 7.33 -2.39 -0.02 1.61 16 49 H 0.07 1.54 5.73 -2.39 -0.01 1.53 16 50 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.13 0.75 8.10 -2.38 -0.02 0.73 16 Total: -1.00 -74.24 376.99 2.48 -71.76 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.54 Total: 30.76 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 7.03 Total: -4.69 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.23 Total: -126.54 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.89 Total: -16.40 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.24 2.48 -71.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381584452.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.061 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds