Wall clock time and date at job start Sat Apr 11 2020 04:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99741 * 2 1 4 4 C 1.53001 * 109.46938 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47087 * 293.01648 * 4 3 2 6 6 C 1.46904 * 110.99716 * 163.28720 * 5 4 3 7 7 C 1.50696 * 109.46896 * 285.23948 * 6 5 4 8 8 H 1.07998 * 120.00388 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00004 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99851 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00051 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47160 * 89.99611 * 11 9 7 13 13 H 1.48501 * 109.47184 * 209.99718 * 11 9 7 14 14 H 1.48504 * 109.46895 * 329.99789 * 11 9 7 15 15 C 1.38582 * 111.00038 * 287.23446 * 5 4 3 16 16 N 1.31215 * 126.47371 * 336.28015 * 15 5 4 17 17 N 1.28531 * 109.86064 * 179.97438 * 16 15 5 18 18 C 1.30294 * 110.05090 * 359.97438 * 17 16 15 19 19 C 1.50708 * 126.34464 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.46691 * 89.97939 * 19 18 17 21 21 C 1.53002 * 109.47245 * 65.00432 * 20 19 18 22 22 C 1.53006 * 109.46728 * 184.99944 * 20 19 18 23 23 N 1.36454 * 126.47104 * 155.95733 * 15 5 4 24 24 C 1.46501 * 127.13619 * 0.04580 * 23 15 5 25 25 H 1.09002 * 115.54811 * 150.31408 * 24 23 15 26 26 C 1.52994 * 117.49836 * 4.64140 * 24 23 15 27 27 C 1.52996 * 117.49666 * 295.97801 * 24 23 15 28 28 H 1.08997 * 117.50215 * 214.99777 * 27 24 23 29 29 C 1.52994 * 117.50168 * 0.02562 * 27 24 23 30 30 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47318 * 299.99961 * 1 2 3 32 32 H 1.09004 * 109.47076 * 60.00270 * 1 2 3 33 33 H 1.08998 * 109.47107 * 59.99929 * 3 2 1 34 34 H 1.09003 * 109.47072 * 299.99784 * 3 2 1 35 35 H 1.09000 * 109.47374 * 53.01523 * 4 3 2 36 36 H 1.09007 * 109.47274 * 173.01842 * 4 3 2 37 37 H 1.08991 * 109.47415 * 45.24481 * 6 5 4 38 38 H 1.09008 * 109.46875 * 165.24529 * 6 5 4 39 39 H 0.97001 * 119.99993 * 180.02562 * 10 9 7 40 40 H 1.08996 * 109.46882 * 209.97878 * 19 18 17 41 41 H 1.08996 * 109.46952 * 329.97992 * 19 18 17 42 42 H 1.08993 * 109.47418 * 304.99973 * 20 19 18 43 43 H 1.08997 * 109.46870 * 180.02562 * 21 20 19 44 44 H 1.09002 * 109.46640 * 299.99378 * 21 20 19 45 45 H 1.08993 * 109.47287 * 59.99461 * 21 20 19 46 46 H 1.08995 * 109.47339 * 60.00184 * 22 20 19 47 47 H 1.09001 * 109.46681 * 180.02562 * 22 20 19 48 48 H 1.08997 * 109.47025 * 299.99701 * 22 20 19 49 49 H 1.08998 * 117.50165 * 0.02562 * 26 24 23 50 50 H 1.09004 * 117.49527 * 145.02309 * 26 24 23 51 51 H 1.09001 * 109.47406 * 67.39641 * 29 27 24 52 52 H 1.09000 * 109.47546 * 187.40072 * 29 27 24 53 53 H 1.08998 * 109.46935 * 307.39827 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9802 0.6065 1.2756 6 6 5.3593 0.1102 1.1759 7 6 5.3744 -1.1770 0.3924 8 1 4.4520 -1.5854 0.0068 9 6 6.5660 -1.8335 0.1679 10 7 7.6893 -1.3360 0.6370 11 14 6.5848 -3.4288 -0.8038 12 1 6.7653 -3.1274 -2.2467 13 1 7.7049 -4.2823 -0.3325 14 1 5.2991 -4.1448 -0.6047 15 6 3.8560 1.5236 2.3071 16 7 3.8338 2.8303 2.1906 17 7 3.7061 3.3701 3.3501 18 6 3.6394 2.4473 4.2674 19 6 3.4874 2.6711 5.7500 20 6 2.0009 2.7105 6.1101 21 6 1.3745 1.3407 5.8413 22 6 1.8441 3.0612 7.5911 23 7 3.7274 1.2380 3.6352 24 6 3.6939 -0.0888 4.2554 25 1 4.0815 -0.1421 5.2728 26 6 3.9235 -1.2988 3.3477 27 6 2.5243 -1.0073 3.8960 28 1 2.1424 -1.6649 4.6768 29 6 1.4795 -0.4700 2.9160 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8492 0.5396 -0.8200 36 1 3.9782 2.1729 -0.1243 37 1 5.9765 0.8516 0.6686 38 1 5.7544 -0.0685 2.1760 39 1 8.5277 -1.7976 0.4788 40 1 3.9710 1.8582 6.2916 41 1 3.9529 3.6178 6.0241 42 1 1.4999 3.4646 5.5031 43 1 0.3155 1.3690 6.0974 44 1 1.4863 1.0909 4.7862 45 1 1.8755 0.5867 6.4483 46 1 2.2903 4.0370 7.7827 47 1 0.7851 3.0889 7.8477 48 1 2.3451 2.3071 8.1981 49 1 4.0998 -1.1078 2.2892 50 1 4.4617 -2.1484 3.7682 51 1 1.9308 -0.3551 1.9305 52 1 0.6456 -1.1692 2.8544 53 1 1.1176 0.4971 3.2649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391039547.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:45 Heat of formation + Delta-G solvation = 59.355103 kcal Electronic energy + Delta-G solvation = -32731.750601 eV Core-core repulsion = 28834.110976 eV Total energy + Delta-G solvation = -3897.639626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.02849 -39.67068 -38.86188 -38.01354 -37.07993 -34.76854 -33.82056 -31.63177 -31.16177 -29.50905 -28.76792 -27.87180 -27.35612 -26.99232 -24.79827 -24.31189 -23.54599 -22.42318 -21.50605 -20.75156 -20.44788 -18.68172 -18.01034 -17.52049 -17.40290 -16.92605 -16.71637 -16.37748 -16.13091 -16.05889 -15.66605 -15.37219 -15.15210 -14.80544 -14.62641 -14.11839 -14.01635 -13.67439 -13.59937 -13.30767 -13.04587 -13.02252 -12.89011 -12.77151 -12.75309 -12.60600 -12.48682 -12.36431 -12.21603 -12.14155 -12.03850 -11.94145 -11.78504 -11.65839 -11.61517 -11.54469 -11.40019 -10.90293 -10.62953 -10.42737 -10.31098 -10.25790 -9.12864 -8.20624 -6.30530 0.83354 1.36390 1.45717 1.47030 1.58453 1.85352 2.41435 2.80251 2.83797 2.96509 3.14054 3.35243 3.66752 3.79981 3.86293 3.97465 3.98176 4.03047 4.11075 4.25254 4.32846 4.38956 4.47857 4.50757 4.55909 4.58246 4.60859 4.67986 4.74986 4.83833 4.84225 4.87782 4.89561 4.92496 4.94533 4.99874 5.04897 5.08062 5.08369 5.15336 5.18708 5.20583 5.30033 5.49416 5.51927 5.62001 5.72837 5.83184 5.88382 5.94030 6.04156 6.32791 6.57332 6.83258 7.38884 7.81812 8.90476 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.004610 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.308138 B = 6071.963015 C = 6742.728219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.085 3.915 4 C 0.068 3.932 5 N -0.434 5.434 6 C 0.221 3.779 7 C -0.508 4.508 8 H 0.073 0.927 9 C 0.015 3.985 10 N -0.930 5.930 11 Si 0.965 3.035 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.260 1.260 15 C 0.363 3.637 16 N -0.367 5.367 17 N -0.327 5.327 18 C 0.181 3.819 19 C -0.021 4.021 20 C -0.083 4.083 21 C -0.159 4.159 22 C -0.138 4.138 23 N -0.433 5.433 24 C 0.044 3.956 25 H 0.157 0.843 26 C -0.206 4.206 27 C -0.117 4.117 28 H 0.135 0.865 29 C -0.146 4.146 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.055 0.945 37 H -0.035 1.035 38 H 0.013 0.987 39 H 0.264 0.736 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.146 0.854 50 H 0.101 0.899 51 H 0.095 0.905 52 H 0.065 0.935 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.105 1.696 11.007 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C 0.008 3.992 4 C -0.060 4.060 5 N -0.159 5.159 6 C 0.097 3.903 7 C -0.546 4.546 8 H 0.091 0.909 9 C -0.184 4.184 10 N -0.570 5.570 11 Si 0.790 3.210 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.184 1.184 15 C 0.006 3.994 16 N -0.211 5.211 17 N -0.166 5.166 18 C -0.087 4.087 19 C -0.061 4.061 20 C -0.103 4.103 21 C -0.216 4.216 22 C -0.195 4.195 23 N -0.125 5.125 24 C -0.059 4.059 25 H 0.174 0.826 26 C -0.243 4.243 27 C -0.136 4.136 28 H 0.153 0.847 29 C -0.202 4.202 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.074 0.926 37 H -0.017 1.017 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.164 0.836 50 H 0.120 0.880 51 H 0.114 0.886 52 H 0.084 0.916 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.072 2.457 10.465 18.513 hybrid contribution 1.030 -0.901 -0.330 1.408 sum -14.042 1.556 10.135 17.388 Atomic orbital electron populations 1.22868 0.80456 1.03475 1.00164 1.88001 1.20462 1.27236 1.94878 1.22323 0.92077 0.84953 0.99888 1.22106 0.94546 0.98894 0.90412 1.59194 1.25173 1.29371 1.02154 1.19544 0.80253 0.94328 0.96213 1.21172 0.93790 1.06033 1.33641 0.90895 1.25759 0.94850 1.01166 0.96663 1.70094 0.98945 1.41190 1.46795 0.85443 0.78051 0.79009 0.78529 1.20294 1.21163 1.18436 1.22885 1.01347 0.90090 0.85103 1.74456 1.24891 1.04093 1.17708 1.73786 1.20535 1.27149 0.95166 1.25313 1.04227 0.80072 0.99083 1.20323 0.99034 1.04794 0.81950 1.21036 0.92819 0.98135 0.98332 1.22151 1.00975 0.96491 1.01954 1.21768 1.02519 1.02102 0.93141 1.45657 1.53424 1.07836 1.05541 1.22307 1.08217 0.76931 0.98472 0.82558 1.24545 0.99248 0.96211 1.04299 1.22818 0.89747 0.99488 1.01516 0.84722 1.21832 0.98010 0.98997 1.01388 0.88545 0.94457 0.93097 0.95016 0.91022 0.88999 0.92643 1.01701 0.96867 0.92675 0.88333 0.87937 0.92586 0.92067 0.93391 0.91314 0.91987 0.91756 0.91393 0.83635 0.88030 0.88648 0.91581 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.61 113.37 1.20 1.82 16 2 O -0.39 -12.51 8.24 -148.98 -1.23 -13.74 16 3 C 0.08 2.82 5.59 71.98 0.40 3.22 16 4 C 0.07 2.72 4.96 86.30 0.43 3.15 16 5 N -0.43 -18.63 1.37 -710.36 -0.97 -19.60 16 6 C 0.22 11.36 3.47 85.55 0.30 11.65 16 7 C -0.51 -26.59 7.21 25.60 0.18 -26.40 16 8 H 0.07 3.78 7.79 -2.91 -0.02 3.76 16 9 C 0.01 0.79 5.46 84.66 0.46 1.25 16 10 N -0.93 -53.63 13.29 21.45 0.28 -53.35 16 11 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 15 C 0.36 15.19 4.84 260.11 1.26 16.44 16 16 N -0.37 -16.26 10.99 -58.00 -0.64 -16.90 16 17 N -0.33 -13.34 12.18 -49.53 -0.60 -13.94 16 18 C 0.18 6.09 6.52 137.64 0.90 6.99 16 19 C -0.02 -0.48 5.06 29.85 0.15 -0.33 16 20 C -0.08 -1.60 2.91 -10.79 -0.03 -1.63 16 21 C -0.16 -3.03 8.00 71.98 0.58 -2.45 16 22 C -0.14 -1.84 9.19 71.98 0.66 -1.17 16 23 N -0.43 -15.35 2.35 -492.47 -1.16 -16.50 16 24 C 0.04 1.33 5.19 44.99 0.23 1.56 16 25 H 0.16 3.70 7.61 -2.39 -0.02 3.68 16 26 C -0.21 -7.16 8.48 30.62 0.26 -6.90 16 27 C -0.12 -3.15 5.49 -10.77 -0.06 -3.21 16 28 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 29 C -0.15 -4.23 8.44 71.98 0.61 -3.62 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.03 1.13 7.34 -2.39 -0.02 1.11 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 3.86 7.27 -2.39 -0.02 3.84 16 36 H 0.06 2.32 7.40 -2.38 -0.02 2.30 16 37 H -0.03 -2.04 8.01 -2.39 -0.02 -2.06 16 38 H 0.01 0.74 6.78 -2.38 -0.02 0.72 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.10 1.83 7.53 -2.39 -0.02 1.81 16 41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 1.16 2.63 -2.39 -0.01 1.16 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.15 6.23 2.46 -2.39 -0.01 6.23 16 50 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 51 H 0.10 3.28 2.69 -2.39 -0.01 3.27 16 52 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 53 H 0.04 1.18 5.87 -2.39 -0.01 1.16 16 Total: -1.00 -66.81 396.38 6.14 -60.66 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.90 Total: 28.73 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 7.53 Total: 0.36 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -3.09 Total: -120.29 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.23 Total: -13.74 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -66.81 6.14 -60.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391039547.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.016 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds