Wall clock time and date at job start Sat Apr 11 2020 04:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47741 * 2 1 4 4 C 1.50701 * 109.47179 * 239.99655 * 2 1 3 5 5 N 1.30295 * 126.34503 * 60.03218 * 4 2 1 6 6 N 1.28527 * 110.05483 * 179.97438 * 5 4 2 7 7 C 1.31217 * 109.86173 * 0.02562 * 6 5 4 8 8 N 1.38577 * 126.47605 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99956 * 232.88249 * 8 7 6 10 10 C 1.46902 * 111.00095 * 356.83184 * 8 7 6 11 11 H 1.09002 * 109.46408 * 55.00098 * 10 8 7 12 12 C 1.52998 * 109.47260 * 295.00431 * 10 8 7 13 13 C 1.50694 * 109.47396 * 175.00310 * 10 8 7 14 14 H 1.07999 * 119.99898 * 4.50150 * 13 10 8 15 15 C 1.37874 * 120.00343 * 184.51186 * 13 10 8 16 16 N 1.31514 * 119.99977 * 5.88909 * 15 13 10 17 17 Si 1.86797 * 120.00184 * 185.90166 * 15 13 10 18 18 H 1.48505 * 109.47383 * 94.99000 * 17 15 13 19 19 H 1.48503 * 109.47249 * 214.98880 * 17 15 13 20 20 H 1.48500 * 109.46973 * 334.98575 * 17 15 13 21 21 N 1.36462 * 107.05185 * 359.75591 * 7 6 5 22 22 C 1.46500 * 127.13679 * 180.24194 * 21 7 6 23 23 C 1.52992 * 109.47219 * 263.23403 * 22 21 7 24 24 C 1.53002 * 109.46878 * 182.54006 * 23 22 21 25 25 O 1.42903 * 112.84781 * 53.80729 * 24 23 22 26 26 C 1.53777 * 113.61809 * 282.49677 * 24 23 22 27 27 C 1.53773 * 87.08279 * 220.02053 * 26 24 23 28 28 C 1.53779 * 87.08559 * 25.43363 * 27 26 24 29 29 H 1.09007 * 109.46749 * 59.99889 * 1 2 3 30 30 H 1.08997 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47074 * 300.00427 * 1 2 3 32 32 H 1.09007 * 109.46749 * 120.00111 * 2 1 3 33 33 H 1.08997 * 109.47078 * 299.99925 * 3 2 1 34 34 H 1.09006 * 109.46727 * 59.99765 * 3 2 1 35 35 H 1.08997 * 109.47670 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.46931 * 51.19576 * 9 8 7 37 37 H 1.08996 * 109.47088 * 171.19794 * 9 8 7 38 38 H 1.09001 * 109.46747 * 291.19559 * 9 8 7 39 39 H 1.09007 * 109.46924 * 64.44033 * 12 10 8 40 40 H 1.09000 * 109.47214 * 184.43988 * 12 10 8 41 41 H 1.08995 * 109.47177 * 304.44120 * 12 10 8 42 42 H 0.96995 * 120.00211 * 180.02562 * 16 15 13 43 43 H 1.09007 * 109.46959 * 23.24143 * 22 21 7 44 44 H 1.09006 * 109.46423 * 143.23254 * 22 21 7 45 45 H 1.08991 * 109.47591 * 302.54275 * 23 22 21 46 46 H 1.09005 * 109.47386 * 62.54663 * 23 22 21 47 47 H 0.96696 * 114.00142 * 309.66604 * 25 24 23 48 48 H 1.08994 * 113.61216 * 334.57345 * 26 24 23 49 49 H 1.09000 * 113.60923 * 105.46969 * 26 24 23 50 50 H 1.09007 * 113.61548 * 270.88550 * 27 26 24 51 51 H 1.09001 * 113.61646 * 139.98702 * 27 26 24 52 52 H 1.08996 * 113.61639 * 220.02329 * 28 27 26 53 53 H 1.09001 * 113.61347 * 89.11298 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7955 -0.3746 -2.4668 6 7 2.3770 -1.1963 -3.2659 7 6 3.0208 -2.1084 -2.5765 8 7 3.7640 -3.1585 -3.0918 9 6 3.3302 -4.4405 -2.5205 10 6 3.6917 -3.1846 -4.5588 11 1 4.0005 -2.2172 -4.9549 12 6 2.2545 -3.4784 -4.9935 13 6 4.6061 -4.2592 -5.0878 14 1 5.1275 -4.9104 -4.4019 15 6 4.7773 -4.4110 -6.4474 16 7 4.2359 -3.5477 -7.2788 17 14 5.7778 -5.8432 -7.1087 18 1 4.8678 -6.9642 -7.4560 19 1 6.5174 -5.4119 -8.3221 20 1 6.7435 -6.2920 -6.0738 21 7 2.8254 -1.8241 -1.2562 22 6 3.3535 -2.5607 -0.1053 23 6 2.2922 -3.5368 0.4061 24 6 2.8203 -4.2605 1.6464 25 8 3.2742 -3.3628 2.6615 26 6 3.8184 -5.3854 1.3250 27 6 3.1312 -6.2040 2.4307 28 6 1.8756 -5.3554 2.1698 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6769 1.9562 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1301 1.4424 0.0005 36 1 2.2489 -4.5353 -2.6200 37 1 3.8171 -5.2583 -3.0518 38 1 3.6029 -4.4791 -1.4659 39 1 1.6054 -2.6612 -4.6787 40 1 2.2158 -3.5759 -6.0784 41 1 1.9184 -4.4074 -4.5330 42 1 4.3560 -3.6547 -8.2353 43 1 4.2427 -3.1152 -0.4056 44 1 3.6136 -1.8587 0.6871 45 1 1.3871 -2.9871 0.6641 46 1 2.0650 -4.2666 -0.3711 47 1 3.8870 -2.6862 2.3428 48 1 3.6942 -5.8076 0.3279 49 1 4.8533 -5.1285 1.5511 50 1 3.5636 -6.0515 3.4196 51 1 3.0061 -7.2574 2.1803 52 1 1.3422 -5.0743 3.0778 53 1 1.2202 -5.7694 1.4035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395792664.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:03 Heat of formation + Delta-G solvation = 38.659405 kcal Electronic energy + Delta-G solvation = -31626.279965 eV Core-core repulsion = 27727.742906 eV Total energy + Delta-G solvation = -3898.537058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.97923 -40.77566 -39.17063 -36.85852 -36.14395 -35.58314 -34.64457 -31.88502 -30.95482 -30.16453 -28.04460 -27.28987 -27.23553 -26.68141 -26.24103 -24.31155 -23.48289 -22.85574 -21.20464 -20.63105 -20.51277 -18.67089 -18.08784 -17.49437 -17.13975 -16.98524 -16.60739 -16.29000 -16.19971 -15.89406 -15.45547 -15.32461 -15.03178 -14.90578 -14.72717 -14.39641 -13.95827 -13.67621 -13.46312 -13.30623 -13.19276 -13.13168 -12.98536 -12.91695 -12.72305 -12.62478 -12.52530 -12.35110 -12.23910 -12.15529 -12.09915 -12.06826 -12.00493 -11.89402 -11.73182 -11.46314 -11.22222 -10.98690 -10.81164 -10.65537 -10.54225 -10.49491 -8.96591 -8.14919 -6.27621 0.88871 1.32392 1.44986 1.45609 1.56570 1.96295 2.41592 2.97360 3.07751 3.17673 3.31014 3.40477 3.52667 3.64492 3.77011 3.88989 3.91074 4.05409 4.07494 4.14629 4.18034 4.35146 4.36646 4.42672 4.47357 4.58976 4.60728 4.71061 4.82113 4.82283 4.83067 4.88309 4.89377 4.95461 5.02130 5.03074 5.04524 5.05563 5.07977 5.11226 5.13508 5.30886 5.35811 5.39064 5.46992 5.50023 5.52144 5.62874 5.87445 6.07658 6.15660 6.58185 6.75431 6.82092 7.40679 7.94838 8.94436 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.004234 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.937424 B = 6612.261833 C = 8902.572705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 C -0.137 4.137 4 C 0.178 3.822 5 N -0.327 5.327 6 N -0.371 5.371 7 C 0.367 3.633 8 N -0.452 5.452 9 C 0.028 3.972 10 C 0.240 3.760 11 H 0.007 0.993 12 C -0.146 4.146 13 C -0.524 4.524 14 H 0.074 0.926 15 C 0.014 3.986 16 N -0.920 5.920 17 Si 0.967 3.033 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.260 1.260 21 N -0.479 5.479 22 C 0.098 3.902 23 C -0.149 4.149 24 C 0.121 3.879 25 O -0.547 6.547 26 C -0.172 4.172 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.030 0.970 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.263 0.737 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.389 0.611 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.082 0.918 51 H 0.075 0.925 52 H 0.075 0.925 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 -1.334 25.005 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.017 4.017 3 C -0.196 4.196 4 C -0.091 4.091 5 N -0.165 5.165 6 N -0.214 5.214 7 C 0.009 3.991 8 N -0.175 5.175 9 C -0.118 4.118 10 C 0.134 3.866 11 H 0.025 0.975 12 C -0.206 4.206 13 C -0.563 4.563 14 H 0.092 0.908 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.792 3.208 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.184 1.184 21 N -0.175 5.175 22 C -0.023 4.023 23 C -0.188 4.188 24 C 0.079 3.921 25 O -0.356 6.356 26 C -0.209 4.209 27 C -0.169 4.169 28 C -0.165 4.165 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.140 0.860 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.240 0.760 48 H 0.108 0.892 49 H 0.096 0.904 50 H 0.101 0.899 51 H 0.094 0.906 52 H 0.094 0.906 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.324 -0.851 24.101 24.500 hybrid contribution 0.672 -0.873 -0.973 1.470 sum -3.652 -1.724 23.127 23.477 Atomic orbital electron populations 1.21772 0.92293 1.02044 1.03283 1.19774 0.97056 0.95711 0.89191 1.21791 1.00801 0.93649 1.03310 1.25440 0.96545 0.89185 0.97974 1.73797 1.20942 1.22344 0.99386 1.74710 1.14241 1.06633 1.25855 1.23192 0.95830 0.98035 0.82014 1.59165 1.46208 1.01253 1.10876 1.22733 0.98351 0.89968 1.00765 1.18927 0.93018 0.96620 0.77998 0.97477 1.22098 0.98562 0.97983 1.01921 1.21319 1.26939 1.16033 0.91977 0.90805 1.25789 0.96924 0.98761 0.97135 1.70142 1.46031 1.36595 1.03137 0.85409 0.78610 0.78937 0.77872 1.19969 1.21462 1.18387 1.46327 1.41156 1.24089 1.05963 1.22200 0.98166 0.95759 0.86186 1.22592 0.98875 0.98958 0.98334 1.22055 0.95783 0.88160 0.86096 1.86498 1.67004 1.46221 1.35854 1.23717 0.99687 0.97433 1.00095 1.22724 0.96164 0.99029 0.99026 1.23066 0.96813 0.94533 1.02104 0.93458 0.93280 0.88501 0.87008 0.93510 0.88417 0.93135 0.95684 0.89203 0.88750 0.95075 0.93226 0.94560 0.92851 0.87931 0.85977 0.90154 0.90545 0.76046 0.89165 0.90360 0.89926 0.90620 0.90614 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.18 71.98 0.66 -1.83 16 2 C 0.00 0.07 3.30 -11.54 -0.04 0.03 16 3 C -0.14 -2.51 9.18 71.98 0.66 -1.85 16 4 C 0.18 5.54 6.58 137.64 0.91 6.45 16 5 N -0.33 -13.73 12.18 -49.54 -0.60 -14.33 16 6 N -0.37 -17.92 9.43 -58.00 -0.55 -18.47 16 7 C 0.37 15.34 6.74 260.11 1.75 17.09 16 8 N -0.45 -19.57 4.77 -711.00 -3.39 -22.96 16 9 C 0.03 0.97 7.31 127.69 0.93 1.90 16 10 C 0.24 12.74 1.91 44.17 0.08 12.83 16 11 H 0.01 0.46 7.90 -2.39 -0.02 0.44 16 12 C -0.15 -7.65 8.44 71.98 0.61 -7.04 16 13 C -0.52 -28.18 7.81 25.60 0.20 -27.98 16 14 H 0.07 3.74 6.68 -2.91 -0.02 3.72 16 15 C 0.01 0.74 5.22 84.65 0.44 1.18 16 16 N -0.92 -54.64 11.92 21.45 0.26 -54.39 16 17 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 21 N -0.48 -14.66 2.80 -514.85 -1.44 -16.10 16 22 C 0.10 1.89 4.43 86.38 0.38 2.27 16 23 C -0.15 -2.47 4.74 30.59 0.14 -2.33 16 24 C 0.12 1.67 1.38 -10.26 -0.01 1.66 16 25 O -0.55 -7.25 13.39 -148.98 -1.99 -9.25 16 26 C -0.17 -2.39 7.37 31.12 0.23 -2.16 16 27 C -0.13 -1.74 8.02 31.12 0.25 -1.49 16 28 C -0.13 -1.74 7.47 31.12 0.23 -1.51 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.50 7.12 -2.38 -0.02 1.49 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.02 0.87 6.73 -2.39 -0.02 0.85 16 37 H 0.09 3.24 6.15 -2.39 -0.01 3.23 16 38 H 0.09 2.42 3.68 -2.39 -0.01 2.42 16 39 H 0.03 1.64 6.09 -2.38 -0.01 1.62 16 40 H 0.05 2.85 6.58 -2.39 -0.02 2.83 16 41 H 0.04 1.72 6.44 -2.39 -0.02 1.70 16 42 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.10 2.06 6.68 -2.38 -0.02 2.05 16 44 H 0.12 1.48 6.02 -2.38 -0.01 1.47 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.50 5.98 -2.38 -0.01 1.49 16 47 H 0.39 2.74 7.12 -74.06 -0.53 2.21 16 48 H 0.09 1.32 7.41 -2.39 -0.02 1.30 16 49 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 51 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.10 1.25 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -75.25 400.97 2.12 -73.13 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.39 Total: 20.43 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 7.43 Total: -2.79 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -5.73 Total: -126.25 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -1.99 Total: -9.25 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -75.25 2.12 -73.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395792664.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.791 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds