Wall clock time and date at job start Sat Apr 11 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 C 1.50695 * 109.47175 * 120.00138 * 2 1 3 5 5 N 1.30290 * 126.34769 * 299.97782 * 4 2 1 6 6 N 1.28533 * 110.05312 * 180.02562 * 5 4 2 7 7 C 1.31215 * 109.86204 * 359.97438 * 6 5 4 8 8 N 1.38584 * 126.47818 * 179.97438 * 7 6 5 9 9 C 1.46898 * 110.99890 * 294.03168 * 8 7 6 10 10 C 1.46902 * 110.99373 * 57.98312 * 8 7 6 11 11 H 1.08999 * 109.47084 * 299.99721 * 10 8 7 12 12 C 1.52995 * 109.47436 * 60.00489 * 10 8 7 13 13 C 1.50703 * 109.46480 * 180.02562 * 10 8 7 14 14 H 1.08002 * 120.00350 * 359.97438 * 13 10 8 15 15 C 1.37885 * 119.99872 * 179.97438 * 13 10 8 16 16 N 1.31518 * 119.99821 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00109 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47151 * 59.99797 * 17 15 13 19 19 H 1.48501 * 109.47041 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46856 * 299.99873 * 17 15 13 21 21 N 1.36456 * 107.05131 * 0.22959 * 7 6 5 22 22 C 1.46504 * 127.13595 * 179.77176 * 21 7 6 23 23 C 1.52998 * 109.47046 * 94.12485 * 22 21 7 24 24 C 1.52995 * 109.47238 * 179.97438 * 23 22 21 25 25 O 1.42900 * 112.84846 * 53.80371 * 24 23 22 26 26 C 1.53784 * 113.61531 * 282.50226 * 24 23 22 27 27 C 1.53785 * 87.08074 * 220.01956 * 26 24 23 28 28 C 1.53777 * 87.08037 * 25.43015 * 27 26 24 29 29 H 1.08998 * 109.46858 * 299.99587 * 1 2 3 30 30 H 1.09001 * 109.47489 * 59.99434 * 1 2 3 31 31 H 1.08997 * 109.47012 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46858 * 240.00413 * 2 1 3 33 33 H 1.08998 * 109.46864 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46780 * 300.00328 * 3 2 1 35 35 H 1.08998 * 109.46968 * 60.00480 * 3 2 1 36 36 H 1.08993 * 109.47181 * 189.89843 * 9 8 7 37 37 H 1.09005 * 109.46956 * 309.89819 * 9 8 7 38 38 H 1.09001 * 109.47533 * 69.89652 * 9 8 7 39 39 H 1.08996 * 109.46885 * 59.99491 * 12 10 8 40 40 H 1.08998 * 109.47165 * 179.97438 * 12 10 8 41 41 H 1.09000 * 109.47030 * 299.99279 * 12 10 8 42 42 H 0.96997 * 119.99454 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.46791 * 214.12532 * 22 21 7 44 44 H 1.08995 * 109.46927 * 334.12529 * 22 21 7 45 45 H 1.09001 * 109.47608 * 300.00142 * 23 22 21 46 46 H 1.09009 * 109.47104 * 60.00189 * 23 22 21 47 47 H 0.96692 * 113.99956 * 309.66761 * 25 24 23 48 48 H 1.09003 * 113.61295 * 334.56076 * 26 24 23 49 49 H 1.09001 * 113.61915 * 105.46678 * 26 24 23 50 50 H 1.09004 * 113.61223 * 270.88320 * 27 26 24 51 51 H 1.08997 * 113.61729 * 139.97859 * 27 26 24 52 52 H 1.09008 * 113.61318 * 220.02099 * 28 27 26 53 53 H 1.08994 * 113.61652 * 89.12330 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7954 -0.3746 2.4668 6 7 2.3770 -1.1964 3.2659 7 6 3.0210 -2.1083 2.5764 8 7 3.7643 -3.1584 3.0916 9 6 4.9499 -2.6642 3.8044 10 6 2.9417 -4.0075 3.9635 11 1 2.5565 -3.4126 4.7916 12 6 1.7725 -4.5816 3.1608 13 6 3.7822 -5.1354 4.5042 14 1 4.8232 -5.2139 4.2275 15 6 3.2222 -6.0673 5.3523 16 7 1.9544 -5.9721 5.6889 17 14 4.2639 -7.4658 6.0220 18 1 5.3992 -6.9087 6.8005 19 1 3.4324 -8.3242 6.9035 20 1 4.7881 -8.2768 4.8938 21 7 2.8253 -1.8241 1.2562 22 6 3.3533 -2.5608 0.1052 23 6 2.3167 -3.5832 -0.3650 24 6 2.8677 -4.3521 -1.5675 25 8 4.1433 -4.9430 -1.3110 26 6 2.8067 -3.5613 -2.8850 27 6 2.3928 -4.8774 -3.5644 28 6 1.8538 -5.3233 -2.1949 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 5.6043 -3.5018 4.0454 37 1 5.4847 -1.9554 3.1721 38 1 4.6403 -2.1685 4.7245 39 1 2.1578 -5.1765 2.3327 40 1 1.1624 -5.2120 3.8077 41 1 1.1647 -3.7655 2.7701 42 1 1.5607 -6.6274 6.2858 43 1 3.5692 -1.8637 -0.7044 44 1 4.2686 -3.0777 0.3934 45 1 2.1006 -4.2803 0.4445 46 1 1.4013 -3.0662 -0.6533 47 1 4.7924 -4.3310 -0.9381 48 1 2.0284 -2.7984 -2.9006 49 1 3.7756 -3.1859 -3.2142 50 1 3.2364 -5.4714 -3.9160 51 1 1.6168 -4.7537 -4.3197 52 1 2.0535 -6.3704 -1.9669 53 1 0.8151 -5.0421 -2.0218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395792665.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:07 Heat of formation + Delta-G solvation = 30.182711 kcal Electronic energy + Delta-G solvation = -31732.287946 eV Core-core repulsion = 27833.383311 eV Total energy + Delta-G solvation = -3898.904635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.98771 -40.71277 -38.87703 -36.78175 -36.08363 -35.53430 -34.81109 -31.85025 -31.32795 -30.14571 -28.03712 -27.57994 -26.89168 -26.38659 -26.02812 -24.39583 -23.58572 -22.83409 -21.25071 -20.60091 -20.50710 -18.61236 -18.17808 -17.70294 -17.18393 -16.81794 -16.55312 -16.43977 -15.88348 -15.80854 -15.53726 -15.26398 -15.07468 -14.98696 -14.66283 -14.21248 -14.00801 -13.70230 -13.59431 -13.17432 -13.13095 -13.03019 -13.01670 -12.94830 -12.72500 -12.66601 -12.49363 -12.30801 -12.21579 -12.17061 -12.13611 -12.07163 -12.05481 -11.97478 -11.70450 -11.49230 -11.39314 -11.10894 -10.77978 -10.59556 -10.55164 -9.91318 -9.54378 -8.15950 -6.30159 0.78653 1.33874 1.44275 1.46046 1.53540 1.86968 2.40305 2.98572 3.12973 3.16121 3.29482 3.48187 3.53174 3.72227 3.79318 3.92446 3.94276 4.12409 4.14343 4.18581 4.20997 4.34528 4.43671 4.52460 4.56820 4.60781 4.67607 4.74814 4.77573 4.82242 4.83309 4.86591 4.87567 4.96162 4.99076 5.00205 5.03510 5.07102 5.08651 5.11970 5.17763 5.34060 5.36446 5.36811 5.42724 5.48166 5.57918 5.64130 5.90049 5.97160 6.12786 6.62686 6.78994 6.80124 7.39041 7.80839 8.91052 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.004584 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.711716 B = 6106.869259 C = 8095.533274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.000 4.000 3 C -0.136 4.136 4 C 0.186 3.814 5 N -0.328 5.328 6 N -0.366 5.366 7 C 0.361 3.639 8 N -0.463 5.463 9 C 0.056 3.944 10 C 0.239 3.761 11 H -0.032 1.032 12 C -0.103 4.103 13 C -0.521 4.521 14 H 0.073 0.927 15 C 0.013 3.987 16 N -0.922 5.922 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.267 1.267 21 N -0.462 5.462 22 C 0.109 3.891 23 C -0.145 4.145 24 C 0.111 3.889 25 O -0.557 6.557 26 C -0.151 4.151 27 C -0.128 4.128 28 C -0.140 4.140 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.013 0.987 39 H 0.038 0.962 40 H 0.063 0.937 41 H -0.003 1.003 42 H 0.263 0.737 43 H 0.130 0.870 44 H 0.099 0.901 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.388 0.612 48 H 0.108 0.892 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.056 0.944 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 9.034 -22.793 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 C -0.194 4.194 4 C -0.083 4.083 5 N -0.168 5.168 6 N -0.209 5.209 7 C 0.003 3.997 8 N -0.189 5.189 9 C -0.092 4.092 10 C 0.133 3.867 11 H -0.014 1.014 12 C -0.161 4.161 13 C -0.560 4.560 14 H 0.091 0.909 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.792 3.208 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.192 1.192 21 N -0.154 5.154 22 C -0.013 4.013 23 C -0.183 4.183 24 C 0.069 3.931 25 O -0.365 6.365 26 C -0.188 4.188 27 C -0.166 4.166 28 C -0.178 4.178 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.148 0.852 44 H 0.117 0.883 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.238 0.762 48 H 0.126 0.874 49 H 0.104 0.896 50 H 0.094 0.906 51 H 0.103 0.897 52 H 0.075 0.925 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.224 8.883 -22.108 23.858 hybrid contribution 0.612 -0.910 1.272 1.679 sum 1.835 7.973 -20.837 22.385 Atomic orbital electron populations 1.21800 0.92372 1.01967 1.03513 1.19865 0.96993 0.96065 0.89128 1.21784 1.00945 0.93192 1.03460 1.25629 0.95694 0.88716 0.98240 1.73804 1.21128 1.22501 0.99321 1.74591 1.13695 1.05240 1.27363 1.22707 0.99052 0.95020 0.82907 1.59180 1.07593 1.12820 1.39295 1.22186 0.90999 1.00189 0.95795 1.19028 0.90352 0.89864 0.87446 1.01413 1.21505 0.97915 0.97928 0.98789 1.21293 0.97167 1.09711 1.27792 0.90860 1.25778 0.96115 1.00405 0.96310 1.70050 1.13321 1.37069 1.35659 0.85462 0.78433 0.78567 0.78307 1.19235 1.21294 1.19234 1.46520 1.38932 1.23138 1.06825 1.22053 0.98129 0.95160 0.85936 1.22456 0.99309 0.97746 0.98815 1.22201 0.84732 0.94382 0.91739 1.86504 1.22237 1.41849 1.85947 1.23630 1.03674 0.97308 0.94215 1.22702 1.01084 0.97122 0.95670 1.23156 0.98487 0.99173 0.96949 0.93499 0.88014 0.93632 0.86599 0.92814 0.88254 0.93436 0.89177 0.91095 0.96851 0.94326 0.91819 0.98443 0.92803 0.85172 0.88299 0.93511 0.89275 0.76202 0.87352 0.89634 0.90587 0.89710 0.92532 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.18 71.98 0.66 -1.82 16 2 C 0.00 0.01 3.29 -11.54 -0.04 -0.03 16 3 C -0.14 -2.17 9.18 71.98 0.66 -1.51 16 4 C 0.19 5.72 6.58 137.64 0.91 6.63 16 5 N -0.33 -13.44 12.18 -49.54 -0.60 -14.04 16 6 N -0.37 -17.32 12.10 -58.00 -0.70 -18.02 16 7 C 0.36 15.15 5.01 260.11 1.30 16.46 16 8 N -0.46 -20.42 4.65 -711.00 -3.30 -23.72 16 9 C 0.06 2.24 9.10 127.69 1.16 3.40 16 10 C 0.24 12.74 1.97 44.17 0.09 12.83 16 11 H -0.03 -2.00 8.07 -2.39 -0.02 -2.02 16 12 C -0.10 -5.40 8.55 71.98 0.62 -4.79 16 13 C -0.52 -28.38 7.99 25.60 0.20 -28.18 16 14 H 0.07 3.79 6.41 -2.91 -0.02 3.78 16 15 C 0.01 0.72 5.30 84.66 0.45 1.17 16 16 N -0.92 -54.34 11.32 21.45 0.24 -54.10 16 17 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 N -0.46 -14.63 2.81 -514.86 -1.45 -16.08 16 22 C 0.11 2.37 5.37 86.38 0.46 2.84 16 23 C -0.14 -3.29 5.17 30.59 0.16 -3.14 16 24 C 0.11 2.13 1.38 -10.27 -0.01 2.11 16 25 O -0.56 -12.68 13.39 -148.98 -1.99 -14.68 16 26 C -0.15 -1.82 7.32 31.12 0.23 -1.59 16 27 C -0.13 -1.85 8.02 31.12 0.25 -1.60 16 28 C -0.14 -2.73 7.47 31.12 0.23 -2.50 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 1.36 7.05 -2.39 -0.02 1.35 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 3.50 6.47 -2.39 -0.02 3.49 16 37 H 0.07 2.39 8.06 -2.38 -0.02 2.37 16 38 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 39 H 0.04 1.92 7.09 -2.39 -0.02 1.91 16 40 H 0.06 3.68 6.07 -2.39 -0.01 3.67 16 41 H 0.00 -0.18 7.22 -2.39 -0.02 -0.20 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.13 1.70 7.33 -2.39 -0.02 1.68 16 44 H 0.10 2.25 6.74 -2.39 -0.02 2.24 16 45 H 0.05 1.53 6.76 -2.39 -0.02 1.51 16 46 H 0.09 1.78 8.05 -2.38 -0.02 1.76 16 47 H 0.39 6.50 7.18 -74.06 -0.53 5.97 16 48 H 0.11 0.90 8.03 -2.39 -0.02 0.88 16 49 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 51 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 53 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -76.04 414.67 1.91 -74.13 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.36 Total: 20.83 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 7.33 Total: 0.28 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.81 Total: -125.96 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -1.99 Total: -14.68 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -76.04 1.91 -74.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395792665.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.317 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds