Wall clock time and date at job start Sat Apr 11 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46852 * 2 1 4 4 C 1.50698 * 109.47305 * 120.00291 * 2 1 3 5 5 H 1.08004 * 119.99537 * 120.00090 * 4 2 1 6 6 C 1.37874 * 119.99961 * 299.99659 * 4 2 1 7 7 N 1.31512 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99731 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47179 * 89.99852 * 8 6 4 10 10 H 1.48507 * 109.46805 * 210.00056 * 8 6 4 11 11 H 1.48501 * 109.47460 * 329.99646 * 8 6 4 12 12 N 1.46899 * 109.46578 * 240.00428 * 2 1 3 13 13 C 1.46900 * 110.99915 * 306.04153 * 12 2 1 14 14 C 1.38580 * 111.00293 * 69.99785 * 12 2 1 15 15 N 1.31220 * 126.47315 * 304.66199 * 14 12 2 16 16 N 1.28529 * 109.85596 * 179.97438 * 15 14 12 17 17 C 1.30286 * 110.05720 * 359.97438 * 16 15 14 18 18 C 1.50706 * 126.34612 * 179.97438 * 17 16 15 19 19 C 1.54267 * 110.03278 * 57.95089 * 18 17 16 20 20 C 1.54958 * 104.16435 * 217.13722 * 19 18 17 21 21 C 1.54896 * 102.77482 * 37.88539 * 20 19 18 22 22 C 1.53874 * 110.03366 * 300.73592 * 18 17 16 23 23 N 1.36453 * 126.47469 * 124.63459 * 14 12 2 24 24 C 1.46505 * 127.13203 * 0.28888 * 23 14 12 25 25 C 1.53006 * 109.46986 * 265.96417 * 24 23 14 26 26 C 1.53001 * 109.46508 * 60.00326 * 25 24 23 27 27 C 1.52992 * 109.46973 * 180.02562 * 25 24 23 28 28 O 1.42900 * 109.47219 * 300.00493 * 25 24 23 29 29 H 1.08993 * 109.47304 * 59.99335 * 1 2 3 30 30 H 1.09001 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46494 * 299.99470 * 1 2 3 32 32 H 0.96994 * 120.00081 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47110 * 189.43749 * 13 12 2 34 34 H 1.08995 * 109.47681 * 309.43790 * 13 12 2 35 35 H 1.09001 * 109.47363 * 69.44144 * 13 12 2 36 36 H 1.08997 * 110.01406 * 179.34048 * 18 17 16 37 37 H 1.09008 * 110.48571 * 335.78532 * 19 18 17 38 38 H 1.09001 * 110.48643 * 98.42242 * 19 18 17 39 39 H 1.09007 * 110.71638 * 279.57601 * 20 19 18 40 40 H 1.08991 * 110.76832 * 156.22037 * 20 19 18 41 41 H 1.09001 * 110.48544 * 203.40643 * 21 20 19 42 42 H 1.09002 * 110.59513 * 80.81980 * 21 20 19 43 43 H 1.09004 * 110.03121 * 238.57076 * 22 18 17 44 44 H 1.09004 * 110.02859 * 359.95170 * 22 18 17 45 45 H 1.08998 * 109.47464 * 25.96679 * 24 23 14 46 46 H 1.09004 * 109.46805 * 145.97044 * 24 23 14 47 47 H 1.08998 * 109.47310 * 60.00125 * 26 25 24 48 48 H 1.09008 * 109.46499 * 180.02562 * 26 25 24 49 49 H 1.08996 * 109.47401 * 299.99850 * 26 25 24 50 50 H 1.08999 * 109.47449 * 60.00237 * 27 25 24 51 51 H 1.09000 * 109.47281 * 180.02562 * 27 25 24 52 52 H 1.08998 * 109.47235 * 300.00114 * 27 25 24 53 53 H 0.96704 * 114.00148 * 299.99931 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3228 -1.1197 4.0078 9 1 3.6308 -0.5443 4.4116 10 1 1.3447 -0.9492 5.1122 11 1 2.4882 -2.5655 3.7120 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7679 0.0526 -2.3406 15 7 0.6012 0.5058 -2.7346 16 7 0.7346 1.1566 -3.8349 17 6 1.9839 1.1577 -4.2048 18 6 2.5494 1.8119 -5.4390 19 6 2.2314 3.3214 -5.4299 20 6 1.9455 3.6577 -6.9153 21 6 1.1816 2.4040 -7.4093 22 6 1.8826 1.2288 -6.6973 23 7 2.6865 0.4539 -3.2664 24 6 4.1261 0.1821 -3.2592 25 6 4.8620 1.3484 -2.5965 26 6 4.3668 1.5124 -1.1582 27 6 6.3654 1.0648 -2.5897 28 8 4.6075 2.5494 -3.3278 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 0.7084 1.1607 3.4844 33 1 1.9348 -2.5869 -2.1038 34 1 1.5616 -2.5646 -0.3636 35 1 0.3718 -1.9513 -1.5368 36 1 3.6275 1.6576 -5.4823 37 1 1.3524 3.5224 -4.8173 38 1 3.0881 3.8895 -5.0673 39 1 2.8764 3.7855 -7.4678 40 1 1.3213 4.5474 -6.9968 41 1 1.2724 2.3036 -8.4909 42 1 0.1323 2.4551 -7.1186 43 1 2.6373 0.7923 -7.3516 44 1 1.1505 0.4720 -6.4152 45 1 4.3202 -0.7340 -2.7015 46 1 4.4788 0.0652 -4.2840 47 1 4.5609 0.5963 -0.6004 48 1 4.8908 2.3436 -0.6861 49 1 3.2958 1.7145 -1.1634 50 1 6.7179 0.9482 -3.6145 51 1 6.8897 1.8954 -2.1171 52 1 6.5598 0.1486 -2.0321 53 1 4.8963 2.5170 -4.2501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411676012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:26 Heat of formation + Delta-G solvation = 11.367295 kcal Electronic energy + Delta-G solvation = -32372.992816 eV Core-core repulsion = 28473.272283 eV Total energy + Delta-G solvation = -3899.720533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.94986 -39.52043 -39.25918 -38.50230 -35.48066 -34.78025 -33.16606 -31.87406 -30.56563 -29.54712 -28.81767 -28.42735 -27.77941 -27.22862 -26.69656 -23.38316 -23.10657 -21.74211 -21.46560 -20.99645 -20.19663 -18.65430 -18.35403 -17.47135 -17.27528 -16.91362 -16.48119 -16.33969 -16.08126 -15.88017 -15.58865 -15.30451 -14.80564 -14.59288 -14.30406 -14.16267 -13.60933 -13.56422 -13.31862 -13.17065 -13.03262 -12.98600 -12.87158 -12.73475 -12.69483 -12.57416 -12.49528 -12.39413 -12.24433 -12.15035 -12.02390 -11.96042 -11.94030 -11.83040 -11.70330 -11.45292 -11.38368 -11.28270 -10.82308 -10.52999 -10.47848 -9.79036 -9.44261 -8.11058 -6.24715 0.87418 1.42082 1.44917 1.46553 1.55782 1.94974 2.42509 3.08153 3.18136 3.20338 3.34545 3.58640 3.62368 3.72524 3.78928 3.98963 4.08735 4.19743 4.27491 4.37899 4.42442 4.54175 4.58035 4.64220 4.65757 4.67960 4.71891 4.73413 4.84741 4.87493 4.91601 4.93244 4.99364 5.02511 5.05553 5.13773 5.14757 5.17407 5.23369 5.28566 5.30482 5.35590 5.37491 5.45892 5.48006 5.57778 5.65911 5.69758 5.93668 6.10907 6.24700 6.70617 6.84663 6.85996 7.44218 7.90992 8.95539 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.003950 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.611603 B = 7087.397018 C = 7931.756758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.245 3.755 3 H -0.001 1.001 4 C -0.511 4.511 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.965 3.035 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.261 1.261 12 N -0.457 5.457 13 C 0.048 3.952 14 C 0.353 3.647 15 N -0.357 5.357 16 N -0.338 5.338 17 C 0.200 3.800 18 C 0.009 3.991 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.110 4.110 23 N -0.455 5.455 24 C 0.080 3.920 25 C 0.125 3.875 26 C -0.128 4.128 27 C -0.164 4.164 28 O -0.564 6.564 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.260 0.740 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.019 0.981 36 H 0.116 0.884 37 H 0.035 0.965 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.109 0.891 46 H 0.133 0.867 47 H 0.073 0.927 48 H 0.051 0.949 49 H 0.019 0.981 50 H 0.094 0.906 51 H 0.066 0.934 52 H 0.074 0.926 53 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.338 -0.011 -20.671 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.139 3.861 3 H 0.017 0.983 4 C -0.550 4.550 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.185 1.185 12 N -0.183 5.183 13 C -0.100 4.100 14 C -0.005 4.005 15 N -0.199 5.199 16 N -0.178 5.178 17 C -0.069 4.069 18 C -0.012 4.012 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.149 4.149 23 N -0.147 5.147 24 C -0.043 4.043 25 C 0.083 3.917 26 C -0.185 4.185 27 C -0.221 4.221 28 O -0.372 6.372 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.134 0.866 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.060 0.940 45 H 0.127 0.873 46 H 0.151 0.849 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.112 0.888 51 H 0.085 0.915 52 H 0.093 0.907 53 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 12.054 0.469 -19.913 23.282 hybrid contribution 0.072 -0.506 1.295 1.393 sum 12.126 -0.038 -18.618 22.219 Atomic orbital electron populations 1.22365 1.00080 0.99302 1.00564 1.18942 0.90166 0.92169 0.84835 0.98331 1.21248 1.31112 1.12808 0.89791 0.91079 1.25743 0.95161 0.95670 1.02071 1.70083 1.37630 1.24436 1.24046 0.85451 0.77756 0.79338 0.78444 1.20132 1.21601 1.18472 1.59291 1.58518 1.02658 0.97796 1.22265 0.96727 0.87927 1.03066 1.22779 0.85039 1.00038 0.92597 1.74594 1.22057 1.15093 1.08176 1.73803 1.17015 1.18907 1.08031 1.25343 0.88679 0.97574 0.95265 1.20444 1.00280 0.94587 0.85907 1.22375 1.01339 0.92924 0.98127 1.22494 1.01237 0.97503 0.93820 1.22329 0.98732 0.94252 1.00549 1.22196 0.99901 0.98163 0.94607 1.46324 1.09721 1.40302 1.18364 1.22966 0.75069 1.00973 1.05253 1.21473 0.95414 0.83645 0.91145 1.21657 0.99572 1.02210 0.95093 1.22332 0.91807 1.03336 1.04662 1.86724 1.85744 1.36843 1.27930 0.94356 0.95106 0.92610 0.93060 0.90793 0.89667 0.96208 0.86618 0.94578 0.89883 0.88571 0.91488 0.89395 0.93625 0.88195 0.94008 0.87276 0.84868 0.90781 0.93001 0.96175 0.88760 0.91490 0.90657 0.76432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.97 8.18 71.98 0.59 -8.38 16 2 C 0.24 12.86 2.15 44.17 0.09 12.95 16 3 H 0.00 -0.07 6.43 -2.39 -0.02 -0.09 16 4 C -0.51 -27.35 7.83 25.60 0.20 -27.15 16 5 H 0.07 3.63 7.17 -2.91 -0.02 3.61 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.53 11.32 21.45 0.24 -54.28 16 8 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 12 N -0.46 -19.85 4.56 -710.99 -3.24 -23.09 16 13 C 0.05 1.87 8.54 127.69 1.09 2.96 16 14 C 0.35 14.93 4.90 260.11 1.28 16.21 16 15 N -0.36 -16.95 9.65 -58.00 -0.56 -17.51 16 16 N -0.34 -14.34 11.96 -49.54 -0.59 -14.94 16 17 C 0.20 6.46 5.88 137.65 0.81 7.27 16 18 C 0.01 0.18 2.61 -10.81 -0.03 0.15 16 19 C -0.11 -2.31 6.36 31.69 0.20 -2.11 16 20 C -0.11 -1.69 6.91 31.91 0.22 -1.47 16 21 C -0.12 -2.01 6.83 31.67 0.22 -1.79 16 22 C -0.11 -1.98 6.45 31.32 0.20 -1.78 16 23 N -0.46 -14.83 2.36 -514.83 -1.22 -16.05 16 24 C 0.08 1.77 4.95 86.38 0.43 2.19 16 25 C 0.12 2.84 1.17 -10.79 -0.01 2.83 16 26 C -0.13 -4.44 8.31 71.98 0.60 -3.85 16 27 C -0.16 -2.41 8.81 71.98 0.63 -1.77 16 28 O -0.56 -12.47 11.52 -148.98 -1.72 -14.18 16 29 H 0.04 2.12 5.66 -2.39 -0.01 2.11 16 30 H 0.03 1.59 6.54 -2.39 -0.02 1.58 16 31 H 0.06 3.35 6.07 -2.38 -0.01 3.33 16 32 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.07 2.40 8.14 -2.38 -0.02 2.39 16 34 H 0.08 3.39 6.65 -2.39 -0.02 3.37 16 35 H 0.02 0.82 6.77 -2.39 -0.02 0.81 16 36 H 0.12 1.43 5.51 -2.39 -0.01 1.42 16 37 H 0.04 1.08 7.68 -2.38 -0.02 1.06 16 38 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 39 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.04 1.02 7.66 -2.38 -0.02 1.00 16 45 H 0.11 2.51 8.13 -2.39 -0.02 2.49 16 46 H 0.13 1.67 7.43 -2.38 -0.02 1.65 16 47 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 49 H 0.02 0.87 4.82 -2.39 -0.01 0.86 16 50 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.39 4.49 7.49 -74.05 -0.55 3.94 16 Total: -1.00 -76.47 397.24 2.26 -74.21 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.35 Total: 23.41 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 6.97 Total: -2.61 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -5.37 Total: -125.87 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.72 Total: -14.18 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -76.47 2.26 -74.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411676012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.574 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds