Wall clock time and date at job start Sat Apr 11 2020 04:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46866 * 2 1 4 4 C 1.50702 * 109.47332 * 240.00111 * 2 1 3 5 5 H 1.07997 * 120.00340 * 239.99424 * 4 2 1 6 6 C 1.37877 * 119.99691 * 60.00039 * 4 2 1 7 7 N 1.31514 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99854 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47027 * 89.99662 * 8 6 4 10 10 H 1.48500 * 109.47200 * 209.99443 * 8 6 4 11 11 H 1.48492 * 109.47166 * 329.99816 * 8 6 4 12 12 N 1.46896 * 109.47636 * 120.00213 * 2 1 3 13 13 C 1.46900 * 111.00678 * 176.04899 * 12 2 1 14 14 C 1.38588 * 110.99727 * 300.00075 * 12 2 1 15 15 N 1.31212 * 126.47599 * 344.93839 * 14 12 2 16 16 N 1.28527 * 109.86615 * 179.97438 * 15 14 12 17 17 C 1.30298 * 110.04923 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.34691 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.46821 * 10.53760 * 18 17 16 20 20 C 1.53001 * 109.47013 * 130.53417 * 18 17 16 21 21 C 1.52993 * 109.47320 * 250.53787 * 18 17 16 22 22 N 1.36455 * 126.46976 * 164.62442 * 14 12 2 23 23 C 1.46499 * 127.13765 * 0.03411 * 22 14 12 24 24 C 1.52995 * 109.47106 * 291.74879 * 23 22 14 25 25 C 1.53001 * 113.00121 * 40.38493 * 24 23 22 26 26 C 1.54040 * 113.82092 * 268.39180 * 24 23 22 27 27 O 1.44179 * 85.51913 * 223.20010 * 26 24 23 28 28 C 1.44183 * 93.33986 * 24.19309 * 27 26 24 29 29 H 1.09000 * 109.47399 * 60.00006 * 1 2 3 30 30 H 1.09001 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46996 * 299.99571 * 1 2 3 32 32 H 0.97007 * 120.00092 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46964 * 56.88378 * 13 12 2 34 34 H 1.08994 * 109.47481 * 176.88867 * 13 12 2 35 35 H 1.09001 * 109.46690 * 296.88908 * 13 12 2 36 36 H 1.09000 * 109.47374 * 59.99553 * 19 18 17 37 37 H 1.09000 * 109.47040 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.47297 * 299.99360 * 19 18 17 39 39 H 1.09000 * 109.46934 * 72.32268 * 20 18 17 40 40 H 1.08998 * 109.47117 * 192.32689 * 20 18 17 41 41 H 1.09010 * 109.47145 * 312.32892 * 20 18 17 42 42 H 1.08993 * 109.47764 * 64.90469 * 21 18 17 43 43 H 1.09002 * 109.47143 * 184.90987 * 21 18 17 44 44 H 1.09004 * 109.46898 * 304.90631 * 21 18 17 45 45 H 1.08998 * 109.47074 * 51.75668 * 23 22 14 46 46 H 1.09008 * 109.46842 * 171.75190 * 23 22 14 47 47 H 1.08994 * 109.46972 * 61.47659 * 25 24 23 48 48 H 1.08996 * 109.47086 * 181.47688 * 25 24 23 49 49 H 1.08999 * 109.46552 * 301.47895 * 25 24 23 50 50 H 1.09001 * 113.85865 * 337.34985 * 26 24 23 51 51 H 1.08998 * 113.86146 * 109.04953 * 26 24 23 52 52 H 1.09001 * 113.85871 * 221.65996 * 28 27 26 53 53 H 1.08997 * 113.86246 * 89.95626 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1870 14 6 1.5754 -0.0641 2.3519 15 7 1.0599 1.1397 2.4347 16 7 0.7569 1.4019 3.6560 17 6 1.0582 0.3891 4.4183 18 6 0.8572 0.3026 5.9094 19 6 0.0020 1.4816 6.3779 20 6 0.1491 -1.0094 6.2532 21 6 2.2161 0.3478 6.6107 22 7 1.5858 -0.5827 3.6140 23 6 2.0655 -1.9052 4.0228 24 6 1.1349 -2.9815 3.4605 25 6 0.6792 -2.6896 2.0294 26 6 -0.0104 -3.3734 4.4132 27 8 0.2892 -4.7314 4.0325 28 6 1.6488 -4.4187 3.6686 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7087 1.1614 -3.4844 33 1 3.9180 0.2024 1.1034 34 1 3.8247 -1.2617 2.1113 35 1 3.8000 -1.3998 0.3370 36 1 -0.9662 1.4494 5.8782 37 1 -0.1438 1.4188 7.4562 38 1 0.5063 2.4163 6.1330 39 1 0.8418 -1.8409 6.1234 40 1 -0.1912 -0.9782 7.2882 41 1 -0.7077 -1.1439 5.5928 42 1 2.6826 1.3174 6.4370 43 1 2.0776 0.1978 7.6814 44 1 2.8564 -0.4398 6.2133 45 1 3.0740 -2.0603 3.6396 46 1 2.0769 -1.9671 5.1111 47 1 1.5474 -2.6562 1.3713 48 1 0.0011 -3.4754 1.6966 49 1 0.1644 -1.7292 2.0009 50 1 0.1934 -3.1540 5.4612 51 1 -0.9922 -3.0303 4.0870 52 1 1.9828 -4.9047 2.7519 53 1 2.3591 -4.5185 4.4893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417465134.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:39 Heat of formation + Delta-G solvation = 83.361745 kcal Electronic energy + Delta-G solvation = -32923.552058 eV Core-core repulsion = 29026.953439 eV Total energy + Delta-G solvation = -3896.598619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.10483 -41.62310 -39.13869 -37.80908 -36.25332 -34.72495 -32.62663 -31.20925 -30.48196 -29.13539 -28.43314 -28.01029 -27.29315 -27.18168 -26.50368 -25.88416 -23.71706 -23.21346 -21.28779 -20.26970 -19.82046 -18.59838 -17.86807 -17.72721 -17.15480 -16.91740 -16.72786 -16.33063 -16.31019 -16.07572 -15.54384 -15.22362 -14.95933 -14.80816 -14.59119 -14.18901 -13.92525 -13.73480 -13.32836 -13.16217 -13.10026 -13.02506 -12.97034 -12.81001 -12.78535 -12.64469 -12.54165 -12.44701 -12.30396 -12.19313 -12.09163 -12.06167 -11.96302 -11.89788 -11.82414 -11.44650 -11.25453 -10.96484 -10.79294 -10.57473 -10.49250 -10.16025 -8.96476 -8.11435 -6.26247 0.92017 1.36734 1.45327 1.46144 1.55755 1.98392 2.41743 2.69046 3.00701 3.10186 3.20591 3.31041 3.49639 3.71798 3.79364 3.92855 4.00958 4.05541 4.17175 4.23137 4.30410 4.36817 4.48648 4.54393 4.63185 4.67653 4.70778 4.80888 4.82691 4.84609 4.89877 4.91877 4.95358 4.98132 5.00422 5.01360 5.05520 5.07054 5.11362 5.14688 5.19843 5.23331 5.24853 5.38661 5.45560 5.47338 5.62722 5.67749 5.68306 5.96332 6.04823 6.18739 6.64409 6.84690 7.42812 7.96380 8.95333 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.004455 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.490971 B = 6283.903733 C = 7503.046853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.245 3.755 3 H -0.028 1.028 4 C -0.520 4.520 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.966 3.034 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.258 1.258 12 N -0.441 5.441 13 C 0.038 3.962 14 C 0.373 3.627 15 N -0.373 5.373 16 N -0.332 5.332 17 C 0.185 3.815 18 C 0.025 3.975 19 C -0.127 4.127 20 C -0.155 4.155 21 C -0.139 4.139 22 N -0.467 5.467 23 C 0.107 3.893 24 C -0.140 4.140 25 C -0.118 4.118 26 C 0.036 3.964 27 O -0.401 6.401 28 C 0.057 3.943 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.011 0.989 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.137 0.863 47 H 0.089 0.911 48 H 0.037 0.963 49 H 0.034 0.966 50 H 0.120 0.880 51 H 0.070 0.930 52 H 0.096 0.904 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -10.060 22.486 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.139 3.861 3 H -0.011 1.011 4 C -0.558 4.558 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.182 1.182 12 N -0.165 5.165 13 C -0.108 4.108 14 C 0.016 3.984 15 N -0.217 5.217 16 N -0.170 5.170 17 C -0.084 4.084 18 C 0.022 3.978 19 C -0.185 4.185 20 C -0.212 4.212 21 C -0.197 4.197 22 N -0.162 5.162 23 C -0.014 4.014 24 C -0.141 4.141 25 C -0.175 4.175 26 C -0.040 4.040 27 O -0.320 6.320 28 C -0.020 4.020 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.154 0.846 47 H 0.108 0.892 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.137 0.863 51 H 0.088 0.912 52 H 0.115 0.885 53 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.799 -9.291 21.868 24.061 hybrid contribution 0.486 0.047 -1.539 1.615 sum 4.285 -9.244 20.328 22.739 Atomic orbital electron populations 1.21602 0.97833 0.98310 0.99487 1.18864 0.92214 0.90476 0.84567 1.01068 1.21349 1.31824 1.12748 0.89897 0.90562 1.25776 0.95178 0.95573 1.02205 1.70096 1.37480 1.24265 1.24116 0.85433 0.79121 0.77931 0.78391 1.20347 1.21579 1.18219 1.59683 1.11378 1.47118 0.98351 1.22395 0.84347 1.00424 1.03683 1.22824 1.00853 0.88739 0.85959 1.74695 1.21826 1.12482 1.12656 1.73848 1.21523 1.24678 0.96942 1.25420 0.99960 0.85896 0.97135 1.19254 0.98612 0.98860 0.81086 1.21699 0.98530 0.96144 1.02088 1.22447 1.00193 0.94543 1.04060 1.21964 0.93460 1.02165 1.02075 1.46205 1.48868 1.15444 1.05640 1.22537 0.98906 0.77056 1.02921 1.24066 0.96680 0.95941 0.97422 1.21848 1.02530 0.99086 0.94065 1.24639 0.98608 0.81083 0.99653 1.89673 1.27288 1.28961 1.86118 1.24238 0.85476 0.90156 1.02118 0.92445 0.95369 0.96296 0.92995 0.97008 0.89766 0.88810 0.93907 0.88531 0.93364 0.90284 0.87874 0.93574 0.93392 0.87952 0.91927 0.87538 0.84560 0.89244 0.94439 0.94664 0.86286 0.91190 0.88548 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.17 8.07 71.98 0.58 -5.59 16 2 C 0.24 12.77 1.72 44.17 0.08 12.85 16 3 H -0.03 -1.75 7.96 -2.39 -0.02 -1.77 16 4 C -0.52 -27.51 7.96 25.60 0.20 -27.31 16 5 H 0.08 3.77 6.40 -2.91 -0.02 3.75 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -54.44 11.32 21.45 0.24 -54.20 16 8 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 N -0.44 -18.19 1.09 -711.01 -0.77 -18.96 16 13 C 0.04 1.35 8.93 127.69 1.14 2.49 16 14 C 0.37 15.02 4.12 260.11 1.07 16.09 16 15 N -0.37 -17.75 9.69 -58.00 -0.56 -18.31 16 16 N -0.33 -13.74 11.52 -49.53 -0.57 -14.31 16 17 C 0.19 5.62 6.34 137.64 0.87 6.49 16 18 C 0.02 0.46 0.75 -52.93 -0.04 0.42 16 19 C -0.13 -2.47 7.98 71.98 0.57 -1.89 16 20 C -0.16 -2.03 6.55 71.98 0.47 -1.55 16 21 C -0.14 -1.86 8.34 71.98 0.60 -1.26 16 22 N -0.47 -13.82 2.69 -514.85 -1.39 -15.20 16 23 C 0.11 2.05 5.02 86.38 0.43 2.48 16 24 C -0.14 -3.03 1.29 -51.48 -0.07 -3.10 16 25 C -0.12 -3.79 7.02 71.98 0.51 -3.28 16 26 C 0.04 0.72 6.93 72.28 0.50 1.22 16 27 O -0.40 -9.31 12.37 -148.98 -1.84 -11.15 16 28 C 0.06 0.96 8.36 72.28 0.60 1.56 16 29 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 30 H 0.03 1.45 7.45 -2.39 -0.02 1.43 16 31 H 0.02 1.00 6.01 -2.39 -0.01 0.99 16 32 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 2.22 6.03 -2.39 -0.01 2.20 16 35 H 0.09 3.27 6.35 -2.39 -0.02 3.25 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 39 H 0.08 0.75 3.25 -2.39 -0.01 0.75 16 40 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 41 H 0.05 0.81 7.35 -2.38 -0.02 0.79 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.73 6.71 -2.38 -0.02 0.71 16 45 H 0.11 1.76 6.30 -2.39 -0.02 1.75 16 46 H 0.14 1.59 3.83 -2.38 -0.01 1.59 16 47 H 0.09 3.09 6.07 -2.39 -0.01 3.08 16 48 H 0.04 1.24 8.09 -2.39 -0.02 1.22 16 49 H 0.03 1.38 4.46 -2.39 -0.01 1.37 16 50 H 0.12 1.56 4.91 -2.39 -0.01 1.55 16 51 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 52 H 0.10 1.65 8.10 -2.39 -0.02 1.64 16 53 H 0.12 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -75.95 380.97 6.03 -69.92 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.92 Total: 16.65 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 7.98 Total: 0.73 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -3.05 Total: -120.99 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.84 Total: -11.15 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -75.95 6.03 -69.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417465134.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.278 kcal (2) G-P(sol) polarization free energy of solvation -75.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds