Wall clock time and date at job start Sat Apr 11 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 C 1.50698 * 109.46940 * 120.00030 * 2 1 3 5 5 H 1.07998 * 120.00285 * 120.00391 * 4 2 1 6 6 C 1.37883 * 120.00023 * 299.99778 * 4 2 1 7 7 N 1.31509 * 119.99785 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99892 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47316 * 59.99648 * 8 6 4 10 10 H 1.48496 * 109.47021 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46795 * 299.99847 * 8 6 4 12 12 N 1.46896 * 109.47031 * 239.99884 * 2 1 3 13 13 C 1.46906 * 111.00127 * 306.04834 * 12 2 1 14 14 C 1.38581 * 110.99962 * 69.99819 * 12 2 1 15 15 N 1.31219 * 126.47193 * 344.63230 * 14 12 2 16 16 N 1.28534 * 109.85551 * 179.97438 * 15 14 12 17 17 C 1.30295 * 110.05915 * 0.02562 * 16 15 14 18 18 C 1.50694 * 126.34916 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47147 * 6.56936 * 18 17 16 20 20 C 1.53000 * 109.47237 * 126.57173 * 18 17 16 21 21 C 1.53004 * 109.46739 * 246.57269 * 18 17 16 22 22 N 1.36453 * 126.47189 * 164.31791 * 14 12 2 23 23 C 1.46503 * 127.13958 * 0.03471 * 22 14 12 24 24 C 1.53001 * 109.47026 * 292.28078 * 23 22 14 25 25 C 1.53000 * 113.00300 * 40.32851 * 24 23 22 26 26 C 1.54035 * 113.81497 * 268.33740 * 24 23 22 27 27 O 1.44180 * 85.51542 * 223.19720 * 26 24 23 28 28 C 1.44174 * 93.34126 * 24.19694 * 27 26 24 29 29 H 1.09008 * 109.46966 * 300.00154 * 1 2 3 30 30 H 1.08996 * 109.47153 * 59.99979 * 1 2 3 31 31 H 1.08999 * 109.47305 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99763 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47002 * 190.32684 * 13 12 2 34 34 H 1.09003 * 109.46732 * 310.32981 * 13 12 2 35 35 H 1.09000 * 109.46988 * 70.32450 * 13 12 2 36 36 H 1.09000 * 109.46960 * 60.00228 * 19 18 17 37 37 H 1.09004 * 109.47169 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.46914 * 300.00222 * 19 18 17 39 39 H 1.09001 * 109.46861 * 75.16853 * 20 18 17 40 40 H 1.08998 * 109.47154 * 195.16925 * 20 18 17 41 41 H 1.08997 * 109.46962 * 315.17290 * 20 18 17 42 42 H 1.08994 * 109.47094 * 64.82418 * 21 18 17 43 43 H 1.09004 * 109.47118 * 184.82642 * 21 18 17 44 44 H 1.09005 * 109.47087 * 304.82205 * 21 18 17 45 45 H 1.09004 * 109.46657 * 52.27457 * 23 22 14 46 46 H 1.08994 * 109.47116 * 172.27404 * 23 22 14 47 47 H 1.08997 * 109.47113 * 61.17925 * 25 24 23 48 48 H 1.08995 * 109.47052 * 181.18880 * 25 24 23 49 49 H 1.09009 * 109.46761 * 301.18606 * 25 24 23 50 50 H 1.08996 * 113.86652 * 337.34417 * 26 24 23 51 51 H 1.09002 * 113.86274 * 109.05000 * 26 24 23 52 52 H 1.09003 * 113.86402 * 221.66141 * 28 27 26 53 53 H 1.08993 * 113.87021 * 89.95413 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1191 4.0077 10 1 1.8269 -0.4199 5.2204 11 1 1.8279 -2.5198 4.0081 12 7 2.0197 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7680 0.0525 -2.3405 15 7 0.9444 1.0689 -2.4426 16 7 0.9586 1.5233 -3.6448 17 6 1.7848 0.8293 -4.3751 18 6 2.0849 1.0468 -5.8358 19 6 1.3906 2.3234 -6.3145 20 6 3.5961 1.1842 -6.0310 21 6 1.5725 -0.1465 -6.6448 22 7 2.3343 -0.1287 -3.5687 23 6 3.3229 -1.1418 -3.9462 24 6 4.6468 -0.8519 -3.2362 25 6 4.4611 -0.3975 -1.7871 26 6 5.6083 0.0341 -4.0505 27 8 6.6351 -0.8832 -3.6231 28 6 5.7015 -1.9610 -3.4099 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.7088 1.1613 3.4844 33 1 1.9455 -2.5924 -2.0930 34 1 1.5475 -2.5589 -0.3583 35 1 0.3754 -1.9516 -1.5523 36 1 1.7556 3.1735 -5.7381 37 1 1.6073 2.4805 -7.3712 38 1 0.3139 2.2254 -6.1754 39 1 4.0636 0.2029 -5.9502 40 1 3.7985 1.6030 -7.0168 41 1 4.0028 1.8446 -5.2652 42 1 0.4858 -0.1932 -6.5747 43 1 1.8646 -0.0302 -7.6885 44 1 2.0021 -1.0662 -6.2476 45 1 2.9621 -2.1280 -3.6538 46 1 3.4758 -1.1160 -5.0250 47 1 3.9665 -1.1857 -1.2196 48 1 5.4348 -0.1873 -1.3447 49 1 3.8496 0.5047 -1.7648 50 1 5.4210 0.0173 -5.1242 51 1 5.7235 1.0421 -3.6519 52 1 5.8908 -2.5355 -2.5031 53 1 5.5427 -2.5871 -4.2879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417465135.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:43 Heat of formation + Delta-G solvation = 83.735415 kcal Electronic energy + Delta-G solvation = -32839.520549 eV Core-core repulsion = 28942.938133 eV Total energy + Delta-G solvation = -3896.582416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.08774 -41.62481 -39.27349 -37.81927 -36.28338 -34.68248 -32.59027 -30.95372 -30.26104 -28.96766 -28.46974 -28.02446 -27.25851 -27.23252 -26.75970 -26.25175 -23.58021 -23.17852 -21.20191 -20.25136 -19.90152 -18.40714 -17.79925 -17.75368 -17.24730 -16.89854 -16.77562 -16.35617 -16.31709 -16.07444 -15.53486 -15.18772 -15.00093 -14.67941 -14.46717 -14.34204 -13.98843 -13.43973 -13.31616 -13.16322 -13.10080 -13.02815 -12.98831 -12.88706 -12.73800 -12.68836 -12.62014 -12.53378 -12.39754 -12.25305 -12.08460 -12.02756 -11.94467 -11.90987 -11.78721 -11.44840 -11.20327 -10.89000 -10.76016 -10.53560 -10.47403 -10.20876 -8.94270 -8.09720 -6.23966 0.92395 1.37435 1.45675 1.47118 1.54398 1.99004 2.42606 2.68285 3.03145 3.11668 3.20147 3.31002 3.49482 3.71749 3.79403 3.93110 4.02284 4.07207 4.17098 4.21839 4.29049 4.35812 4.48701 4.55167 4.62342 4.68110 4.70390 4.71157 4.81882 4.87458 4.90766 4.92935 4.97047 4.99265 5.01175 5.01505 5.06462 5.07696 5.13989 5.17176 5.19782 5.23612 5.26773 5.38631 5.44897 5.51767 5.63092 5.67989 5.68654 5.92026 6.13285 6.25280 6.65738 6.86088 7.44804 7.96798 8.96490 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.004526 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.285167 B = 6185.090892 C = 7577.137884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.246 3.754 3 H -0.006 1.006 4 C -0.515 4.515 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.264 1.264 12 N -0.440 5.440 13 C 0.034 3.966 14 C 0.371 3.629 15 N -0.370 5.370 16 N -0.334 5.334 17 C 0.185 3.815 18 C 0.024 3.976 19 C -0.126 4.126 20 C -0.152 4.152 21 C -0.140 4.140 22 N -0.467 5.467 23 C 0.109 3.891 24 C -0.140 4.140 25 C -0.112 4.112 26 C 0.037 3.963 27 O -0.401 6.401 28 C 0.057 3.943 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.019 0.981 36 H 0.042 0.958 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.135 0.865 47 H 0.092 0.908 48 H 0.036 0.964 49 H 0.024 0.976 50 H 0.119 0.881 51 H 0.069 0.931 52 H 0.097 0.903 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 -8.153 -22.361 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.140 3.860 3 H 0.012 0.988 4 C -0.553 4.553 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.189 1.189 12 N -0.164 5.164 13 C -0.113 4.113 14 C 0.014 3.986 15 N -0.213 5.213 16 N -0.172 5.172 17 C -0.084 4.084 18 C 0.021 3.979 19 C -0.184 4.184 20 C -0.210 4.210 21 C -0.198 4.198 22 N -0.161 5.161 23 C -0.012 4.012 24 C -0.141 4.141 25 C -0.170 4.170 26 C -0.039 4.039 27 O -0.321 6.321 28 C -0.019 4.019 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.082 0.918 45 H 0.125 0.875 46 H 0.153 0.847 47 H 0.111 0.889 48 H 0.055 0.945 49 H 0.043 0.957 50 H 0.136 0.864 51 H 0.088 0.912 52 H 0.115 0.885 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.448 -7.033 -21.710 24.006 hybrid contribution -0.243 -0.380 1.518 1.583 sum 7.205 -7.413 -20.192 22.685 Atomic orbital electron populations 1.22242 0.99605 0.98864 1.00847 1.18826 0.90562 0.92043 0.84609 0.98813 1.21248 1.31289 1.12913 0.89886 0.90940 1.25746 0.95198 0.95660 1.02091 1.70088 1.37546 1.24269 1.24088 0.85518 0.78644 0.78789 0.78093 1.19664 1.21717 1.18890 1.59873 1.55000 1.03333 0.98175 1.22429 0.96643 0.88170 1.04063 1.22915 0.92553 0.96684 0.86469 1.74730 1.20393 1.13707 1.12490 1.73852 1.20293 1.24800 0.98210 1.25410 0.96396 0.89408 0.97169 1.19258 0.97973 0.98767 0.81859 1.21698 1.00055 0.94735 1.01929 1.22367 0.91796 1.02833 1.03982 1.21994 1.01167 0.95418 1.01187 1.46199 1.34222 1.27869 1.07833 1.22497 0.85758 0.90638 1.02322 1.24068 0.94468 0.98390 0.97210 1.21767 0.99408 1.02158 0.93633 1.24596 0.84745 0.94449 1.00098 1.89672 1.30133 1.24854 1.87391 1.24240 0.83871 0.90370 1.03459 0.92475 0.94489 0.95090 0.93062 0.89471 0.89333 0.96203 0.93896 0.88550 0.93369 0.90336 0.87999 0.93876 0.93283 0.87961 0.91815 0.87474 0.84710 0.88944 0.94458 0.95691 0.86358 0.91248 0.88508 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.25 8.19 71.98 0.59 -7.66 16 2 C 0.25 12.76 2.03 44.17 0.09 12.85 16 3 H -0.01 -0.38 7.99 -2.39 -0.02 -0.40 16 4 C -0.51 -27.30 7.82 25.60 0.20 -27.10 16 5 H 0.07 3.62 7.18 -2.91 -0.02 3.60 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.47 11.32 21.45 0.24 -54.23 16 8 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 N -0.44 -18.06 1.05 -710.99 -0.74 -18.80 16 13 C 0.03 1.16 8.27 127.69 1.06 2.22 16 14 C 0.37 14.90 4.51 260.11 1.17 16.07 16 15 N -0.37 -17.45 9.28 -58.00 -0.54 -17.99 16 16 N -0.33 -13.77 11.51 -49.54 -0.57 -14.34 16 17 C 0.19 5.63 6.29 137.64 0.87 6.49 16 18 C 0.02 0.46 0.75 -52.93 -0.04 0.42 16 19 C -0.13 -2.46 7.93 71.98 0.57 -1.89 16 20 C -0.15 -2.06 6.88 71.98 0.50 -1.56 16 21 C -0.14 -1.83 8.30 71.98 0.60 -1.24 16 22 N -0.47 -13.82 2.71 -514.85 -1.39 -15.21 16 23 C 0.11 2.10 4.97 86.38 0.43 2.53 16 24 C -0.14 -3.08 1.29 -51.48 -0.07 -3.14 16 25 C -0.11 -3.69 7.18 71.98 0.52 -3.17 16 26 C 0.04 0.76 7.13 72.27 0.52 1.27 16 27 O -0.40 -9.44 12.37 -148.98 -1.84 -11.28 16 28 C 0.06 0.97 8.36 72.28 0.60 1.58 16 29 H 0.06 3.35 6.07 -2.38 -0.01 3.34 16 30 H 0.04 1.96 5.83 -2.39 -0.01 1.95 16 31 H 0.03 1.51 6.56 -2.39 -0.02 1.49 16 32 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 33 H 0.09 2.23 6.28 -2.39 -0.01 2.21 16 34 H 0.09 3.17 6.64 -2.39 -0.02 3.16 16 35 H 0.02 0.72 6.82 -2.39 -0.02 0.70 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 0.77 3.35 -2.39 -0.01 0.76 16 40 H 0.10 0.81 8.05 -2.39 -0.02 0.79 16 41 H 0.04 0.79 7.58 -2.39 -0.02 0.78 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.06 0.71 6.22 -2.38 -0.01 0.70 16 45 H 0.11 1.76 6.39 -2.38 -0.02 1.75 16 46 H 0.14 1.59 3.75 -2.39 -0.01 1.58 16 47 H 0.09 3.24 6.00 -2.39 -0.01 3.22 16 48 H 0.04 1.26 8.09 -2.39 -0.02 1.24 16 49 H 0.02 1.00 5.75 -2.38 -0.01 0.99 16 50 H 0.12 1.58 4.98 -2.39 -0.01 1.57 16 51 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 52 H 0.10 1.67 8.10 -2.39 -0.02 1.65 16 53 H 0.12 1.10 8.10 -2.39 -0.02 1.08 16 Total: -1.00 -75.57 381.14 6.15 -69.42 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.92 Total: 18.59 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 8.05 Total: -1.22 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -3.00 Total: -120.57 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.84 Total: -11.28 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -75.57 6.15 -69.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417465135.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.157 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds