Wall clock time and date at job start Sat Apr 11 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46654 * 2 1 4 4 C 1.50707 * 109.47185 * 240.00507 * 2 1 3 5 5 H 1.07991 * 119.99902 * 239.99826 * 4 2 1 6 6 C 1.37869 * 119.99791 * 59.99726 * 4 2 1 7 7 N 1.31520 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99799 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47137 * 90.00409 * 8 6 4 10 10 H 1.48497 * 109.47289 * 209.99795 * 8 6 4 11 11 H 1.48495 * 109.46988 * 330.00127 * 8 6 4 12 12 N 1.46894 * 109.47165 * 120.00323 * 2 1 3 13 13 C 1.46893 * 111.00260 * 58.95797 * 12 2 1 14 14 C 1.38583 * 110.99996 * 294.99920 * 12 2 1 15 15 N 1.31211 * 126.47438 * 5.20195 * 14 12 2 16 16 N 1.28528 * 109.86245 * 180.25456 * 15 14 12 17 17 C 1.30296 * 110.05408 * 359.74570 * 16 15 14 18 18 C 1.50692 * 126.35112 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47574 * 270.04517 * 18 17 16 20 20 C 1.53005 * 117.49718 * 243.75102 * 19 18 17 21 21 C 1.52999 * 117.50348 * 175.08607 * 19 18 17 22 22 N 1.36455 * 126.47263 * 185.02632 * 14 12 2 23 23 C 1.46500 * 127.13660 * 0.02562 * 22 14 12 24 24 C 1.52994 * 109.47186 * 263.52822 * 23 22 14 25 25 C 1.53001 * 109.47379 * 176.91859 * 24 23 22 26 26 C 1.52996 * 109.47375 * 59.99723 * 25 24 23 27 27 C 1.52994 * 109.47379 * 179.97438 * 25 24 23 28 28 O 1.42909 * 109.46788 * 300.00033 * 25 24 23 29 29 H 1.08998 * 109.47483 * 299.99263 * 1 2 3 30 30 H 1.08999 * 109.47403 * 60.00256 * 1 2 3 31 31 H 1.09007 * 109.46749 * 179.97438 * 1 2 3 32 32 H 0.96997 * 119.99977 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47038 * 288.66955 * 13 12 2 34 34 H 1.09005 * 109.47271 * 48.66569 * 13 12 2 35 35 H 1.09003 * 109.47576 * 168.67056 * 13 12 2 36 36 H 1.09006 * 109.46938 * 30.04282 * 18 17 16 37 37 H 1.09001 * 109.47431 * 150.04092 * 18 17 16 38 38 H 1.08997 * 115.54677 * 29.41168 * 19 18 17 39 39 H 1.09000 * 117.49636 * 359.97438 * 20 19 18 40 40 H 1.08999 * 117.49659 * 145.01945 * 20 19 18 41 41 H 1.08990 * 117.49992 * 214.97691 * 21 19 18 42 42 H 1.09000 * 117.49353 * 359.97417 * 21 19 18 43 43 H 1.09004 * 109.47307 * 143.52648 * 23 22 14 44 44 H 1.09007 * 109.47033 * 23.52897 * 23 22 14 45 45 H 1.09002 * 109.47173 * 56.91733 * 24 23 22 46 46 H 1.09003 * 109.47157 * 296.91614 * 24 23 22 47 47 H 1.08996 * 109.47158 * 60.00054 * 26 25 24 48 48 H 1.08995 * 109.47923 * 180.02562 * 26 25 24 49 49 H 1.09009 * 109.46918 * 300.00523 * 26 25 24 50 50 H 1.09002 * 109.47173 * 59.99874 * 27 25 24 51 51 H 1.09005 * 109.47358 * 179.97438 * 27 25 24 52 52 H 1.09003 * 109.47157 * 299.99755 * 27 25 24 53 53 H 0.96699 * 113.99805 * 299.99129 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6034 8 14 2.3225 -1.1192 -4.0080 9 1 1.3448 -2.1612 -4.4126 10 1 2.4872 -0.1399 -5.1120 11 1 3.6308 -1.7562 -3.7120 12 7 2.0196 -0.6925 1.1993 13 6 1.5284 -2.0761 1.2458 14 6 1.6697 -0.0024 2.3490 15 7 0.9140 1.0681 2.4166 16 7 0.8019 1.4471 3.6396 17 6 1.4695 0.6443 4.4190 18 6 1.5880 0.7482 5.9177 19 6 2.7987 1.6128 6.2750 20 6 3.9446 0.9436 7.0367 21 6 3.0249 1.9355 7.7533 22 7 2.0432 -0.3096 3.6249 23 6 2.8889 -1.4262 4.0543 24 6 2.0054 -2.5931 4.4998 25 6 2.8870 -3.7859 4.8755 26 6 3.8223 -3.3887 6.0192 27 6 2.0035 -4.9526 5.3216 28 8 3.6620 -4.1810 3.7417 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 0.7088 1.1616 -3.4843 33 1 0.4607 -2.0754 1.4654 34 1 1.7007 -2.5554 0.2821 35 1 2.0591 -2.6242 2.0243 36 1 0.6842 1.2035 6.3229 37 1 1.7148 -0.2477 6.3421 38 1 3.0593 2.3807 5.5466 39 1 3.8356 -0.1125 7.2836 40 1 4.9589 1.2716 6.8097 41 1 3.4346 2.9155 7.9976 42 1 2.3108 1.5322 8.4714 43 1 3.5167 -1.1075 4.8864 44 1 3.5198 -1.7444 3.2242 45 1 1.3391 -2.8762 3.6850 46 1 1.4142 -2.2918 5.3646 47 1 3.2312 -3.0873 6.8839 48 1 4.4506 -4.2382 6.2866 49 1 4.4517 -2.5573 5.7018 50 1 1.3369 -5.2358 4.5070 51 1 2.6315 -5.8026 5.5887 52 1 1.4126 -4.6510 6.1865 53 1 3.1332 -4.4468 2.9770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417466281.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:47 Heat of formation + Delta-G solvation = 40.516522 kcal Electronic energy + Delta-G solvation = -31487.794207 eV Core-core repulsion = 27589.337679 eV Total energy + Delta-G solvation = -3898.456528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.94602 -39.68090 -39.15056 -38.34004 -36.25350 -34.82469 -33.58843 -32.39597 -30.73690 -30.38527 -28.80230 -28.24715 -27.23645 -26.57382 -25.17650 -23.50072 -23.16778 -22.29620 -21.26224 -21.07985 -20.97318 -18.47819 -17.94253 -17.73427 -17.20588 -16.88432 -16.74473 -16.40773 -16.30144 -15.58099 -15.30391 -15.23049 -14.96603 -14.84796 -14.50153 -14.35703 -14.10842 -13.78242 -13.43828 -13.24645 -13.15679 -12.99025 -12.96159 -12.89180 -12.68646 -12.61057 -12.55545 -12.48597 -12.30126 -12.27215 -12.23181 -12.00807 -11.96692 -11.55218 -11.44329 -11.32141 -11.12095 -10.94863 -10.82044 -10.69947 -10.50280 -10.45533 -9.00323 -8.12069 -6.27494 0.88700 1.36207 1.44867 1.46442 1.57027 1.93473 2.41948 2.87920 3.01858 3.17516 3.29612 3.41453 3.59817 3.73742 3.82254 3.86095 3.98405 4.03767 4.09210 4.14534 4.24047 4.29813 4.35456 4.39177 4.46835 4.53138 4.63763 4.73741 4.75892 4.79713 4.84855 4.87643 4.91951 4.94957 4.99793 5.06447 5.08496 5.09181 5.11455 5.14238 5.22332 5.29361 5.30730 5.32841 5.40869 5.48071 5.61476 5.63876 5.89002 6.09637 6.22180 6.61368 6.82093 6.83839 7.41490 7.92766 8.94653 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.003870 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.565994 B = 7233.802316 C = 8979.579901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.242 3.758 3 H -0.001 1.001 4 C -0.524 4.524 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.455 5.455 13 C 0.036 3.964 14 C 0.364 3.636 15 N -0.368 5.368 16 N -0.336 5.336 17 C 0.180 3.820 18 C 0.013 3.987 19 C -0.172 4.172 20 C -0.172 4.172 21 C -0.158 4.158 22 N -0.473 5.473 23 C 0.110 3.890 24 C -0.158 4.158 25 C 0.135 3.865 26 C -0.146 4.146 27 C -0.175 4.175 28 O -0.574 6.574 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.262 0.738 33 H 0.021 0.979 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.078 0.922 53 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -11.660 24.273 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.017 0.983 4 C -0.562 4.562 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.178 5.178 13 C -0.111 4.111 14 C 0.006 3.994 15 N -0.211 5.211 16 N -0.174 5.174 17 C -0.090 4.090 18 C -0.026 4.026 19 C -0.191 4.191 20 C -0.209 4.209 21 C -0.194 4.194 22 N -0.168 5.168 23 C -0.012 4.012 24 C -0.197 4.197 25 C 0.094 3.906 26 C -0.203 4.203 27 C -0.232 4.232 28 O -0.382 6.382 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.097 0.903 53 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.913 -10.297 24.040 26.610 hybrid contribution -0.391 -0.711 -1.663 1.850 sum 4.522 -11.008 22.378 25.345 Atomic orbital electron populations 1.22202 0.99236 0.98752 1.01078 1.18910 0.90901 0.92368 0.84266 0.98343 1.21314 1.31737 1.13133 0.90037 0.90958 1.25794 0.95083 0.95643 1.02190 1.70095 1.37387 1.24105 1.24243 0.85387 0.79030 0.78042 0.78140 1.19676 1.21396 1.18735 1.59153 1.56181 1.03963 0.98477 1.22587 0.97299 0.86624 1.04570 1.23151 0.95062 0.95684 0.85516 1.74701 1.19133 1.14624 1.12688 1.73844 1.21861 1.24806 0.96867 1.25275 0.97526 0.88664 0.97493 1.19704 0.99482 1.02086 0.81323 1.22051 0.97996 1.02725 0.96352 1.23226 0.95016 0.99677 1.02968 1.23072 1.02817 1.00846 0.92711 1.46385 1.40807 1.24884 1.04726 1.22145 0.92419 0.83925 1.02682 1.22785 0.98725 0.95103 1.03057 1.21179 0.90858 0.91531 0.87058 1.21907 0.99570 1.02370 0.96473 1.22450 0.99967 0.98139 1.02675 1.86562 1.38386 1.88229 1.25058 0.94372 0.92106 0.95301 0.92859 0.96060 0.89259 0.89075 0.87597 0.86970 0.90769 0.86483 0.89070 0.88555 0.86556 0.86605 0.88955 0.91672 0.88796 0.88855 0.91624 0.92052 0.92307 0.91308 0.90273 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.27 8.27 71.98 0.60 -7.67 16 2 C 0.24 13.10 2.04 44.17 0.09 13.19 16 3 H 0.00 -0.09 8.02 -2.39 -0.02 -0.11 16 4 C -0.52 -28.72 7.78 25.60 0.20 -28.52 16 5 H 0.07 3.76 6.83 -2.92 -0.02 3.74 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.82 11.32 21.45 0.24 -54.57 16 8 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 N -0.45 -20.27 4.74 -711.01 -3.37 -23.64 16 13 C 0.04 1.28 7.94 127.69 1.01 2.29 16 14 C 0.36 15.65 6.70 260.11 1.74 17.39 16 15 N -0.37 -18.06 9.16 -58.01 -0.53 -18.59 16 16 N -0.34 -14.38 12.18 -49.54 -0.60 -14.99 16 17 C 0.18 5.72 7.28 137.64 1.00 6.72 16 18 C 0.01 0.26 5.82 29.85 0.17 0.43 16 19 C -0.17 -3.21 5.72 -10.79 -0.06 -3.27 16 20 C -0.17 -2.19 10.18 30.62 0.31 -1.88 16 21 C -0.16 -1.96 10.26 30.62 0.31 -1.65 16 22 N -0.47 -15.07 2.81 -514.86 -1.45 -16.52 16 23 C 0.11 2.40 4.40 86.38 0.38 2.78 16 24 C -0.16 -2.54 4.33 30.59 0.13 -2.41 16 25 C 0.13 1.74 1.09 -10.80 -0.01 1.73 16 26 C -0.15 -1.50 8.49 71.98 0.61 -0.89 16 27 C -0.17 -1.81 8.81 71.98 0.63 -1.18 16 28 O -0.57 -9.77 12.25 -148.98 -1.83 -11.60 16 29 H 0.04 2.06 5.69 -2.39 -0.01 2.05 16 30 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 31 H 0.03 1.43 6.65 -2.38 -0.02 1.42 16 32 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.02 0.77 6.90 -2.38 -0.02 0.76 16 34 H 0.09 3.33 6.26 -2.38 -0.01 3.32 16 35 H 0.09 2.46 4.16 -2.39 -0.01 2.45 16 36 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.11 1.39 7.28 -2.39 -0.02 1.37 16 38 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 39 H 0.12 0.96 8.03 -2.39 -0.02 0.94 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.12 1.98 6.54 -2.38 -0.02 1.97 16 44 H 0.09 2.38 6.84 -2.38 -0.02 2.36 16 45 H 0.06 1.26 6.18 -2.39 -0.01 1.24 16 46 H 0.09 1.23 7.71 -2.39 -0.02 1.21 16 47 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.06 0.70 6.50 -2.38 -0.02 0.69 16 50 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 52 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.39 5.11 8.74 -74.06 -0.65 4.46 16 Total: -1.00 -76.51 405.79 2.34 -74.17 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.27 Total: 22.17 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 7.58 Total: -1.79 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -5.71 Total: -128.32 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.83 Total: -11.60 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -76.51 2.34 -74.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417466281.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.687 kcal (2) G-P(sol) polarization free energy of solvation -76.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds