Wall clock time and date at job start Sat Apr 11 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47073 * 2 1 4 4 C 1.50700 * 109.47078 * 120.00236 * 2 1 3 5 5 H 1.08000 * 120.00294 * 120.00442 * 4 2 1 6 6 C 1.37883 * 119.99694 * 300.00042 * 4 2 1 7 7 N 1.31512 * 120.00394 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99791 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46829 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46775 * 119.99982 * 8 6 4 11 11 H 1.48490 * 109.46931 * 240.00098 * 8 6 4 12 12 N 1.46899 * 109.47170 * 240.00180 * 2 1 3 13 13 C 1.46900 * 110.99851 * 183.95306 * 12 2 1 14 14 C 1.38582 * 110.99805 * 60.00432 * 12 2 1 15 15 N 1.31210 * 126.47729 * 57.86146 * 14 12 2 16 16 N 1.28531 * 109.85936 * 179.73724 * 15 14 12 17 17 C 1.30290 * 110.05438 * 0.02562 * 16 15 14 18 18 C 1.50704 * 126.34893 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47208 * 89.97491 * 18 17 16 20 20 C 1.53003 * 117.49808 * 243.75215 * 19 18 17 21 21 C 1.52998 * 117.49909 * 175.08979 * 19 18 17 22 22 N 1.36462 * 126.46643 * 237.55112 * 14 12 2 23 23 C 1.46498 * 127.13851 * 0.24026 * 22 14 12 24 24 C 1.53003 * 109.46867 * 95.44931 * 23 22 14 25 25 C 1.53000 * 109.46832 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47033 * 185.00114 * 25 24 23 27 27 C 1.53006 * 109.47206 * 304.99852 * 25 24 23 28 28 O 1.42904 * 109.47591 * 64.99707 * 25 24 23 29 29 H 1.09006 * 109.47367 * 299.99759 * 1 2 3 30 30 H 1.09000 * 109.47306 * 60.00045 * 1 2 3 31 31 H 1.08996 * 109.47115 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00157 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47356 * 301.67383 * 13 12 2 34 34 H 1.08997 * 109.47075 * 61.67207 * 13 12 2 35 35 H 1.08996 * 109.47094 * 181.67765 * 13 12 2 36 36 H 1.09000 * 109.47093 * 209.97695 * 18 17 16 37 37 H 1.09002 * 109.47108 * 329.97270 * 18 17 16 38 38 H 1.09004 * 115.54802 * 29.41630 * 19 18 17 39 39 H 1.08998 * 117.49857 * 359.97438 * 20 19 18 40 40 H 1.08990 * 117.50302 * 145.02074 * 20 19 18 41 41 H 1.09002 * 117.49873 * 214.97914 * 21 19 18 42 42 H 1.09006 * 117.49877 * 359.97438 * 21 19 18 43 43 H 1.08995 * 109.47139 * 215.45013 * 23 22 14 44 44 H 1.09005 * 109.47098 * 335.45190 * 23 22 14 45 45 H 1.09003 * 109.47055 * 299.99801 * 24 23 22 46 46 H 1.08993 * 109.47376 * 60.00241 * 24 23 22 47 47 H 1.08995 * 109.47349 * 60.00040 * 26 25 24 48 48 H 1.09001 * 109.46945 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.46995 * 299.99163 * 26 25 24 50 50 H 1.09005 * 109.46860 * 59.99703 * 27 25 24 51 51 H 1.08993 * 109.47650 * 180.02562 * 27 25 24 52 52 H 1.09003 * 109.46634 * 300.00128 * 27 25 24 53 53 H 0.96701 * 114.00226 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6035 8 14 2.3224 -1.1196 4.0080 9 1 3.1483 -2.2857 3.6037 10 1 3.1471 -0.1858 4.8161 11 1 1.1677 -1.5867 4.8164 12 7 2.0196 -0.6924 -1.1994 13 6 3.4850 -0.7944 -1.1870 14 6 1.5754 -0.0639 -2.3519 15 7 1.7853 1.1867 -2.6887 16 7 1.2348 1.4313 -3.8242 17 6 0.6455 0.3604 -4.2750 18 6 -0.1110 0.2361 -5.5725 19 6 0.8494 -0.1916 -6.6839 20 6 1.0736 0.7863 -7.8391 21 6 0.2506 -0.4852 -8.0609 22 7 0.8418 -0.6305 -3.3534 23 6 0.3639 -2.0134 -3.4262 24 6 -1.0719 -2.0850 -2.9024 25 6 -1.5708 -3.5294 -2.9778 26 6 -3.0452 -3.5815 -2.5723 27 6 -1.4169 -4.0481 -4.4090 28 8 -0.8035 -4.3454 -2.0904 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7088 1.1613 3.4845 33 1 3.9183 0.2041 -1.1291 34 1 3.8013 -1.3784 -0.3227 35 1 3.8229 -1.2846 -2.1000 36 1 -0.8975 -0.5108 -5.4644 37 1 -0.5561 1.1980 -5.8271 38 1 1.6982 -0.7966 -6.3648 39 1 0.5365 1.7343 -7.8074 40 1 2.0695 0.8245 -8.2802 41 1 0.7055 -1.2831 -8.6479 42 1 -0.8278 -0.3740 -8.1748 43 1 0.3904 -2.3530 -4.4615 44 1 1.0048 -2.6518 -2.8179 45 1 -1.0983 -1.7454 -1.8670 46 1 -1.7127 -1.4467 -3.5106 47 1 -3.6304 -2.9592 -3.2492 48 1 -3.4005 -4.6106 -2.6256 49 1 -3.1548 -3.2121 -1.5527 50 1 -0.3665 -4.0109 -4.6979 51 1 -1.7727 -5.0769 -4.4629 52 1 -2.0022 -3.4257 -5.0859 53 1 -1.0653 -5.2763 -2.0866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417466285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:51 Heat of formation + Delta-G solvation = 32.603721 kcal Electronic energy + Delta-G solvation = -31444.019350 eV Core-core repulsion = 27545.219697 eV Total energy + Delta-G solvation = -3898.799653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.96763 -39.56217 -38.92695 -38.29618 -36.29010 -34.94044 -33.59628 -32.39642 -31.31748 -30.22034 -28.71516 -28.22351 -27.36699 -26.13900 -25.25581 -23.54322 -23.16055 -22.33717 -21.22879 -21.12921 -21.07941 -18.54084 -17.93346 -17.69236 -17.40282 -16.86210 -16.66478 -16.51109 -15.86854 -15.70587 -15.30769 -15.20098 -15.07158 -14.86331 -14.44589 -14.26215 -14.09927 -13.86132 -13.67047 -13.52746 -13.10414 -12.97836 -12.88431 -12.73307 -12.64702 -12.62169 -12.56090 -12.43306 -12.34079 -12.27535 -12.20969 -12.09401 -12.06667 -11.71990 -11.54401 -11.24353 -11.09761 -11.03921 -10.81584 -10.70666 -10.59608 -9.91571 -9.52113 -8.15558 -6.29594 0.78596 1.36441 1.43258 1.44503 1.57090 1.84535 2.40924 2.90565 3.00627 3.16108 3.31236 3.34608 3.65953 3.69930 3.86421 3.90084 4.00532 4.07358 4.11345 4.16513 4.28478 4.33548 4.38423 4.42831 4.50811 4.60702 4.64952 4.73524 4.74750 4.75744 4.78989 4.85479 4.88064 4.88984 4.94725 4.97128 5.01917 5.06797 5.10163 5.18086 5.21597 5.25520 5.29837 5.34691 5.35271 5.42620 5.57065 5.64415 5.90914 5.99001 6.13562 6.64073 6.80706 7.00336 7.39289 7.79458 8.92016 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.004077 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.481466 B = 6866.979339 C = 8599.213906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.238 3.762 3 H -0.031 1.031 4 C -0.521 4.521 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.465 5.465 13 C 0.055 3.945 14 C 0.362 3.638 15 N -0.365 5.365 16 N -0.330 5.330 17 C 0.185 3.815 18 C 0.008 3.992 19 C -0.163 4.163 20 C -0.185 4.185 21 C -0.147 4.147 22 N -0.461 5.461 23 C 0.119 3.881 24 C -0.120 4.120 25 C 0.133 3.867 26 C -0.176 4.176 27 C -0.176 4.176 28 O -0.579 6.579 29 H 0.065 0.935 30 H -0.003 1.003 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.014 0.986 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.040 0.960 50 H 0.064 0.936 51 H 0.077 0.923 52 H 0.084 0.916 53 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 -12.979 -21.335 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H -0.013 1.013 4 C -0.559 4.559 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.794 3.206 9 H -0.184 1.184 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.191 5.191 13 C -0.092 4.092 14 C 0.004 3.996 15 N -0.208 5.208 16 N -0.170 5.170 17 C -0.083 4.083 18 C -0.031 4.031 19 C -0.183 4.183 20 C -0.222 4.222 21 C -0.184 4.184 22 N -0.154 5.154 23 C -0.003 4.003 24 C -0.158 4.158 25 C 0.092 3.908 26 C -0.233 4.233 27 C -0.234 4.234 28 O -0.388 6.388 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.110 0.890 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.096 0.904 52 H 0.102 0.898 53 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.361 -11.369 -20.994 24.983 hybrid contribution 0.077 -0.698 1.424 1.588 sum -7.284 -12.066 -19.569 24.117 Atomic orbital electron populations 1.21498 0.97450 0.98735 0.98401 1.19042 0.92297 0.90457 0.84978 1.01293 1.21354 1.31880 1.12701 0.89979 0.91034 1.25787 0.95078 0.95599 1.02163 1.70061 1.37568 1.24190 1.24283 0.85329 0.78129 0.78586 0.78532 1.18423 1.20808 1.20498 1.59151 1.12068 1.49833 0.98089 1.22190 0.84267 1.00079 1.02704 1.22696 0.96866 0.88424 0.91595 1.74570 1.23339 1.13691 1.09218 1.73841 1.13322 1.24353 1.05475 1.25394 1.02675 0.84433 0.95848 1.19785 0.95198 1.04839 0.83281 1.22016 1.01475 1.05188 0.89592 1.23130 1.02117 0.95228 1.01697 1.23108 1.00748 0.98823 0.95731 1.46604 1.40094 1.12925 1.15732 1.22095 0.96464 0.77168 1.04532 1.21947 0.94996 0.97133 1.01715 1.21092 0.90442 0.88801 0.90415 1.22460 0.95417 1.03778 1.01647 1.22546 1.03203 1.02919 0.94685 1.86665 1.61766 1.24400 1.65920 0.91648 0.98414 0.94464 0.92763 0.96678 0.89209 0.91294 0.86949 0.87788 0.89377 0.88308 0.89061 0.87486 0.86734 0.85763 0.89216 0.93815 0.88951 0.90297 0.90078 0.94094 0.91689 0.90369 0.89754 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.54 8.59 71.98 0.62 -4.92 16 2 C 0.24 13.15 1.99 44.17 0.09 13.24 16 3 H -0.03 -1.97 8.06 -2.38 -0.02 -1.99 16 4 C -0.52 -29.23 7.95 25.60 0.20 -29.03 16 5 H 0.07 3.87 6.40 -2.91 -0.02 3.85 16 6 C 0.01 0.72 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.95 11.32 21.45 0.24 -54.71 16 8 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.47 -21.92 4.62 -711.00 -3.29 -25.21 16 13 C 0.06 2.36 9.15 127.69 1.17 3.53 16 14 C 0.36 16.17 5.04 260.11 1.31 17.48 16 15 N -0.37 -17.99 12.09 -58.00 -0.70 -18.70 16 16 N -0.33 -14.17 12.18 -49.54 -0.60 -14.77 16 17 C 0.19 6.08 7.28 137.64 1.00 7.09 16 18 C 0.01 0.17 5.81 29.85 0.17 0.34 16 19 C -0.16 -2.84 5.72 -10.79 -0.06 -2.90 16 20 C -0.18 -2.92 10.18 30.62 0.31 -2.60 16 21 C -0.15 -1.61 10.25 30.62 0.31 -1.29 16 22 N -0.46 -15.98 2.81 -514.85 -1.45 -17.42 16 23 C 0.12 3.12 5.26 86.38 0.45 3.58 16 24 C -0.12 -2.98 4.83 30.60 0.15 -2.84 16 25 C 0.13 2.42 1.09 -10.79 -0.01 2.41 16 26 C -0.18 -2.81 8.82 71.98 0.63 -2.18 16 27 C -0.18 -1.89 8.33 71.98 0.60 -1.29 16 28 O -0.58 -12.98 12.51 -148.98 -1.86 -14.85 16 29 H 0.06 3.85 6.07 -2.38 -0.01 3.83 16 30 H 0.00 -0.17 7.22 -2.39 -0.02 -0.19 16 31 H 0.04 1.93 7.21 -2.39 -0.02 1.91 16 32 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.01 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.09 3.77 6.30 -2.39 -0.02 3.76 16 35 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 36 H 0.11 1.58 7.65 -2.39 -0.02 1.56 16 37 H 0.10 2.00 7.88 -2.39 -0.02 1.98 16 38 H 0.09 1.80 8.07 -2.38 -0.02 1.78 16 39 H 0.10 1.54 8.03 -2.39 -0.02 1.52 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.12 2.27 6.27 -2.39 -0.01 2.25 16 44 H 0.09 2.79 7.78 -2.38 -0.02 2.77 16 45 H 0.04 1.52 6.94 -2.39 -0.02 1.51 16 46 H 0.09 1.92 7.82 -2.39 -0.02 1.91 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 50 H 0.06 0.74 6.35 -2.38 -0.02 0.73 16 51 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.39 5.16 9.05 -74.06 -0.67 4.49 16 Total: -1.00 -77.93 418.77 1.99 -75.94 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.22 Total: 21.89 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 7.40 Total: 1.77 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -5.79 Total: -130.81 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.86 Total: -14.85 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -77.93 1.99 -75.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417466285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.543 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds