Wall clock time and date at job start Sat Apr 11 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46954 * 2 1 4 4 O 1.42896 * 109.47035 * 120.00550 * 2 1 3 5 5 C 1.42903 * 113.99993 * 150.00071 * 4 2 1 6 6 C 1.52997 * 109.47062 * 179.97438 * 5 4 2 7 7 N 1.46509 * 109.47080 * 179.97438 * 6 5 4 8 8 C 1.36737 * 127.13579 * 275.42859 * 7 6 5 9 9 C 1.50700 * 126.34646 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47094 * 270.01468 * 9 8 7 11 11 C 1.52996 * 117.49806 * 243.74594 * 10 9 8 12 12 C 1.52999 * 117.49714 * 175.08839 * 10 9 8 13 13 N 1.30290 * 107.30312 * 180.02562 * 8 7 6 14 14 N 1.28524 * 110.05594 * 0.02562 * 13 8 7 15 15 C 1.31213 * 109.85828 * 0.02562 * 14 13 8 16 16 N 1.38588 * 126.47207 * 179.73911 * 15 14 13 17 17 C 1.46898 * 110.99846 * 293.90949 * 16 15 14 18 18 C 1.46896 * 111.00039 * 57.86478 * 16 15 14 19 19 H 1.09000 * 109.47626 * 299.99707 * 18 16 15 20 20 C 1.52997 * 109.47409 * 60.00241 * 18 16 15 21 21 C 1.50704 * 109.47185 * 179.97438 * 18 16 15 22 22 H 1.08005 * 119.99883 * 0.02562 * 21 18 16 23 23 C 1.37881 * 120.00185 * 179.97438 * 21 18 16 24 24 N 1.31517 * 119.99700 * 180.02562 * 23 21 18 25 25 Si 1.86796 * 120.00008 * 0.02562 * 23 21 18 26 26 H 1.48497 * 109.47205 * 89.99647 * 25 23 21 27 27 H 1.48498 * 109.47266 * 210.00204 * 25 23 21 28 28 H 1.48505 * 109.47090 * 329.99963 * 25 23 21 29 29 H 1.08998 * 109.47343 * 299.99897 * 1 2 3 30 30 H 1.09004 * 109.47278 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46853 * 240.00319 * 2 1 3 33 33 H 1.09005 * 109.46912 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47650 * 300.00004 * 3 2 1 35 35 H 1.08995 * 109.47338 * 60.00587 * 3 2 1 36 36 H 1.08997 * 109.47256 * 59.99638 * 5 4 2 37 37 H 1.09003 * 109.46816 * 299.99634 * 5 4 2 38 38 H 1.08997 * 109.47032 * 59.99927 * 6 5 4 39 39 H 1.08995 * 109.47394 * 300.00090 * 6 5 4 40 40 H 1.08998 * 109.47108 * 30.02177 * 9 8 7 41 41 H 1.09004 * 109.46928 * 150.01438 * 9 8 7 42 42 H 1.08997 * 115.55264 * 29.41973 * 10 9 8 43 43 H 1.09001 * 117.50274 * 0.02562 * 11 10 9 44 44 H 1.09005 * 117.49614 * 145.01781 * 11 10 9 45 45 H 1.08998 * 117.49828 * 214.97824 * 12 10 9 46 46 H 1.09005 * 117.50012 * 359.97438 * 12 10 9 47 47 H 1.09005 * 109.46985 * 65.62353 * 17 16 15 48 48 H 1.09008 * 109.47050 * 185.61827 * 17 16 15 49 49 H 1.09002 * 109.47560 * 305.62101 * 17 16 15 50 50 H 1.08998 * 109.47380 * 59.99927 * 20 18 16 51 51 H 1.09001 * 109.47573 * 180.02562 * 20 18 16 52 52 H 1.09003 * 109.47290 * 300.00035 * 20 18 16 53 53 H 0.97000 * 119.99275 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9885 6 6 3.6760 -2.0083 2.2943 7 7 4.9672 -2.6760 2.1114 8 6 5.1855 -3.9243 1.5978 9 6 4.1330 -4.8850 1.1076 10 6 3.6736 -5.7728 2.2659 11 6 3.9472 -7.2741 2.1568 12 6 2.5206 -6.7424 1.9985 13 7 6.4720 -4.1295 1.6118 14 7 7.0767 -3.1040 2.0961 15 6 6.2010 -2.1822 2.4202 16 7 6.4770 -0.9427 2.9754 17 6 7.0304 -1.0836 4.3289 18 6 7.3820 -0.1698 2.1144 19 1 8.3185 -0.7136 1.9907 20 6 6.7295 0.0397 0.7465 21 6 7.6580 1.1689 2.7490 22 1 7.2065 1.4202 3.6975 23 6 8.4876 2.0725 2.1194 24 7 8.7288 3.2405 2.6736 25 14 9.2690 1.6375 0.4795 26 1 8.3740 2.0674 -0.6248 27 1 10.5767 2.3300 0.3550 28 1 9.4775 0.1691 0.4044 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.0199 -0.5875 0.7124 37 1 3.1808 -2.0707 0.1984 38 1 2.9221 -2.7453 2.5708 39 1 3.7612 -1.2619 3.0841 40 1 3.2823 -4.3249 0.7194 41 1 4.5499 -5.5076 0.3158 42 1 3.7320 -5.3212 3.2562 43 1 4.4550 -7.6294 1.2601 44 1 4.1854 -7.8103 3.0755 45 1 1.8208 -6.9289 2.8131 46 1 2.0891 -6.7475 0.9975 47 1 8.0029 -1.5730 4.2746 48 1 7.1446 -0.0975 4.7792 49 1 6.3546 -1.6848 4.9371 50 1 5.7930 0.5836 0.8701 51 1 7.4012 0.6128 0.1074 52 1 6.5294 -0.9283 0.2872 53 1 9.3122 3.8763 2.2305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434599722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:35 Heat of formation + Delta-G solvation = 50.456702 kcal Electronic energy + Delta-G solvation = -31072.035979 eV Core-core repulsion = 27174.010490 eV Total energy + Delta-G solvation = -3898.025489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.09184 -39.53823 -39.11934 -38.35001 -36.43231 -34.92584 -33.70088 -32.72187 -31.99279 -30.18644 -28.76975 -28.10674 -27.35808 -26.25875 -24.75319 -23.60876 -23.16740 -22.38467 -22.24396 -21.23438 -21.15065 -18.99234 -18.33827 -17.82568 -17.40489 -16.95781 -16.86881 -16.66869 -16.47382 -15.86144 -15.68864 -15.33756 -15.10951 -14.91146 -14.73136 -14.45843 -14.17368 -13.98235 -13.86417 -13.67146 -13.55391 -13.18316 -13.06225 -12.91372 -12.80583 -12.75519 -12.61915 -12.57797 -12.50860 -12.30774 -12.28027 -12.14210 -11.68741 -11.66838 -11.59222 -11.32483 -11.26713 -11.14175 -10.84627 -10.81412 -10.62468 -10.01726 -9.67107 -8.35336 -6.38898 0.63614 1.13520 1.21099 1.31072 1.38844 1.74523 2.24223 2.51072 2.86198 2.95821 3.01838 3.29192 3.56096 3.76501 3.84599 3.93374 3.96477 4.01504 4.11379 4.12266 4.14865 4.21788 4.26932 4.29299 4.35607 4.38202 4.41180 4.48907 4.52793 4.62553 4.66866 4.72511 4.74754 4.82302 4.87329 4.87910 4.88852 4.96071 4.97036 5.00714 5.04198 5.09814 5.17756 5.27917 5.28603 5.33458 5.34623 5.41823 5.63246 5.78512 6.11858 6.16163 6.52941 6.65838 7.24908 7.68504 8.79740 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.004498 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.334795 B = 6223.942166 C = 8551.888550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 C -0.179 4.179 4 O -0.386 6.386 5 C 0.057 3.943 6 C 0.117 3.883 7 N -0.459 5.459 8 C 0.194 3.806 9 C 0.007 3.993 10 C -0.164 4.164 11 C -0.182 4.182 12 C -0.152 4.152 13 N -0.322 5.322 14 N -0.354 5.354 15 C 0.360 3.640 16 N -0.459 5.459 17 C 0.055 3.945 18 C 0.205 3.795 19 H -0.005 1.005 20 C -0.131 4.131 21 C -0.508 4.508 22 H 0.062 0.938 23 C 0.033 3.967 24 N -0.933 5.933 25 Si 0.929 3.071 26 H -0.262 1.262 27 H -0.290 1.290 28 H -0.268 1.268 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.023 0.977 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.042 0.958 52 H 0.031 0.969 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.613 -15.292 -6.028 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 C -0.237 4.237 4 O -0.305 6.305 5 C -0.021 4.021 6 C -0.005 4.005 7 N -0.153 5.153 8 C -0.075 4.075 9 C -0.033 4.033 10 C -0.183 4.183 11 C -0.219 4.219 12 C -0.189 4.189 13 N -0.161 5.161 14 N -0.197 5.197 15 C 0.002 3.998 16 N -0.185 5.185 17 C -0.093 4.093 18 C 0.098 3.902 19 H 0.013 0.987 20 C -0.189 4.189 21 C -0.546 4.546 22 H 0.080 0.920 23 C -0.167 4.167 24 N -0.572 5.572 25 Si 0.757 3.243 26 H -0.187 1.187 27 H -0.218 1.218 28 H -0.193 1.193 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.123 0.877 46 H 0.131 0.869 47 H 0.042 0.958 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.060 0.940 52 H 0.050 0.950 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.747 -15.517 -6.015 25.824 hybrid contribution 0.903 0.891 -0.454 1.347 sum -18.844 -14.626 -6.469 24.715 Atomic orbital electron populations 1.21848 0.91527 1.03334 1.03282 1.22314 0.96292 0.91946 0.87426 1.22338 1.00722 0.97385 1.03227 1.87823 1.35010 1.70213 1.37411 1.22625 0.86556 0.96152 0.96743 1.21667 0.81096 0.98844 0.98938 1.46309 1.07643 1.14095 1.47222 1.25394 0.95621 0.85924 1.00519 1.19806 0.92947 0.93215 0.97305 1.22030 1.05844 0.92026 0.98403 1.23131 1.00012 0.94966 1.03744 1.23099 0.90747 1.00760 1.04315 1.73906 1.03956 1.19229 1.19036 1.74610 1.27294 0.99643 1.18192 1.22608 0.82823 0.93485 1.00835 1.58890 1.48236 1.07301 1.04062 1.22217 0.97440 1.02840 0.86777 1.19508 0.88667 0.92140 0.89909 0.98728 1.22014 1.01088 0.98846 0.96925 1.21001 1.28159 0.98058 1.07406 0.92029 1.25453 0.96295 0.94579 1.00341 1.69961 1.38426 1.08068 1.40759 0.86157 0.77882 0.78708 0.81577 1.18743 1.21765 1.19261 0.92192 0.89444 0.91203 0.91309 0.94371 0.89785 0.92276 0.94396 0.91240 0.85189 0.88153 0.87161 0.87344 0.89215 0.88095 0.89040 0.87743 0.86888 0.95830 0.89812 0.90762 0.91722 0.93995 0.95047 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.56 71.98 0.69 -1.24 16 2 C 0.08 1.44 3.34 30.59 0.10 1.54 16 3 C -0.18 -3.78 9.53 71.98 0.69 -3.10 16 4 O -0.39 -8.71 9.99 -148.98 -1.49 -10.20 16 5 C 0.06 1.33 6.07 71.98 0.44 1.77 16 6 C 0.12 2.78 6.22 86.38 0.54 3.32 16 7 N -0.46 -13.91 2.81 -514.86 -1.45 -15.35 16 8 C 0.19 5.56 7.28 137.64 1.00 6.56 16 9 C 0.01 0.12 5.81 29.85 0.17 0.29 16 10 C -0.16 -2.61 5.72 -10.80 -0.06 -2.67 16 11 C -0.18 -2.62 10.18 30.62 0.31 -2.30 16 12 C -0.15 -1.62 10.25 30.62 0.31 -1.30 16 13 N -0.32 -12.16 12.18 -49.54 -0.60 -12.76 16 14 N -0.35 -15.36 12.10 -58.01 -0.70 -16.06 16 15 C 0.36 14.14 5.04 260.11 1.31 15.45 16 16 N -0.46 -19.52 4.62 -711.00 -3.29 -22.81 16 17 C 0.05 2.19 9.15 127.69 1.17 3.35 16 18 C 0.20 10.02 1.58 44.17 0.07 10.09 16 19 H 0.00 -0.26 7.12 -2.39 -0.02 -0.28 16 20 C -0.13 -5.88 8.29 71.98 0.60 -5.29 16 21 C -0.51 -28.22 8.53 25.60 0.22 -28.00 16 22 H 0.06 3.68 6.64 -2.91 -0.02 3.66 16 23 C 0.03 1.87 5.45 84.66 0.46 2.33 16 24 N -0.93 -56.43 13.96 21.45 0.30 -56.13 16 25 Si 0.93 45.47 24.37 68.60 1.67 47.14 16 26 H -0.26 -12.02 6.87 99.48 0.68 -11.34 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.27 -13.17 6.53 99.48 0.65 -12.52 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.14 7.79 -2.38 -0.02 1.12 16 33 H 0.04 0.98 7.87 -2.38 -0.02 0.96 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.12 6.67 -2.39 -0.02 1.10 16 37 H 0.07 1.34 7.77 -2.39 -0.02 1.32 16 38 H 0.13 2.22 8.07 -2.39 -0.02 2.20 16 39 H 0.10 2.72 8.10 -2.39 -0.02 2.70 16 40 H 0.11 1.38 7.66 -2.39 -0.02 1.37 16 41 H 0.11 1.76 7.88 -2.39 -0.02 1.74 16 42 H 0.09 1.70 8.07 -2.39 -0.02 1.68 16 43 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 44 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.08 3.54 6.30 -2.38 -0.02 3.53 16 49 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 50 H 0.06 2.78 7.22 -2.39 -0.02 2.77 16 51 H 0.04 1.92 3.27 -2.39 -0.01 1.92 16 52 H 0.03 1.32 7.22 -2.39 -0.02 1.30 16 53 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -71.06 417.88 3.26 -67.80 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.80 Total: 17.57 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 8.02 Total: 0.80 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.74 Total: -123.12 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.49 Total: -10.20 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.14 kcal Total: -71.06 3.26 -67.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434599722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.261 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds