Wall clock time and date at job start Sat Apr 11 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99716 * 2 1 4 4 C 1.53002 * 109.46920 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47144 * 66.13794 * 4 3 2 6 6 C 1.46901 * 110.99968 * 158.03578 * 5 4 3 7 7 C 1.50702 * 109.46779 * 299.06782 * 6 5 4 8 8 H 1.08000 * 119.99902 * 354.77566 * 7 6 5 9 9 C 1.37876 * 119.99822 * 174.77699 * 7 6 5 10 10 N 1.31521 * 120.00055 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00082 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47287 * 89.99963 * 11 9 7 13 13 H 1.48504 * 109.47383 * 209.99683 * 11 9 7 14 14 H 1.48500 * 109.47240 * 329.99802 * 11 9 7 15 15 C 1.38586 * 110.99651 * 281.98790 * 5 4 3 16 16 N 1.31209 * 126.47397 * 359.95716 * 15 5 4 17 17 N 1.28526 * 109.86564 * 180.02562 * 16 15 5 18 18 C 1.30297 * 110.04963 * 359.71986 * 17 16 15 19 19 C 1.50704 * 126.35334 * 180.31084 * 18 17 16 20 20 C 1.52998 * 109.46737 * 300.15749 * 19 18 17 21 21 C 1.53003 * 109.46717 * 60.15218 * 19 18 17 22 22 N 1.36447 * 126.47029 * 180.02562 * 15 5 4 23 23 C 1.46499 * 127.14216 * 359.96225 * 22 15 5 24 24 C 1.52993 * 109.47416 * 90.02323 * 23 22 15 25 25 H 1.09003 * 115.54897 * 330.58638 * 24 23 22 26 26 C 1.53005 * 117.50075 * 116.25628 * 24 23 22 27 27 C 1.53001 * 117.50389 * 184.91522 * 24 23 22 28 28 H 1.09003 * 117.49265 * 359.97438 * 27 24 23 29 29 C 1.53002 * 117.50124 * 144.99676 * 27 24 23 30 30 H 1.08998 * 109.47132 * 60.00717 * 1 2 3 31 31 H 1.09007 * 109.46572 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47275 * 299.99899 * 1 2 3 33 33 H 1.09002 * 109.47013 * 59.99715 * 3 2 1 34 34 H 1.09000 * 109.46686 * 299.99970 * 3 2 1 35 35 H 1.08994 * 109.46822 * 306.13446 * 4 3 2 36 36 H 1.09005 * 109.46461 * 186.13198 * 4 3 2 37 37 H 1.08993 * 109.47044 * 59.07276 * 6 5 4 38 38 H 1.08999 * 109.47000 * 179.07069 * 6 5 4 39 39 H 0.96995 * 120.00305 * 180.02562 * 10 9 7 40 40 H 1.08992 * 109.47576 * 180.15130 * 19 18 17 41 41 H 1.09002 * 109.47518 * 59.99936 * 20 19 18 42 42 H 1.09001 * 109.46846 * 179.97438 * 20 19 18 43 43 H 1.08991 * 109.47195 * 299.99175 * 20 19 18 44 44 H 1.09001 * 109.46796 * 180.02562 * 21 19 18 45 45 H 1.08999 * 109.47314 * 300.00527 * 21 19 18 46 46 H 1.09001 * 109.47038 * 60.00437 * 21 19 18 47 47 H 1.09005 * 109.46881 * 330.02541 * 23 22 15 48 48 H 1.09000 * 109.47172 * 210.02903 * 23 22 15 49 49 H 1.08996 * 117.50010 * 215.00759 * 26 24 23 50 50 H 1.08999 * 117.49489 * 0.02562 * 26 24 23 51 51 H 1.08997 * 109.46839 * 60.00339 * 29 27 24 52 52 H 1.08994 * 109.47180 * 180.02562 * 29 27 24 53 53 H 1.08998 * 109.46954 * 300.00531 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9799 0.5874 -1.2656 6 6 5.3851 0.9173 -1.5388 7 6 5.5372 2.4123 -1.6519 8 1 4.6648 3.0480 -1.6172 9 6 6.7900 2.9685 -1.7999 10 7 7.8524 2.1943 -1.8428 11 14 6.9787 4.8217 -1.9394 12 1 7.1521 5.4050 -0.5848 13 1 8.1686 5.1370 -2.7700 14 1 5.7655 5.3964 -2.5742 15 6 3.7831 -0.7845 -1.2636 16 7 3.2737 -1.4979 -0.2873 17 7 3.2382 -2.7375 -0.6247 18 6 3.7134 -2.8865 -1.8288 19 6 3.8359 -4.1834 -2.5867 20 6 4.7349 -5.1460 -1.8082 21 6 2.4491 -4.8066 -2.7582 22 7 4.0838 -1.6485 -2.2759 23 6 4.6744 -1.3176 -3.5751 24 6 6.1993 -1.3906 -3.4756 25 1 6.6177 -1.1664 -2.4944 26 6 6.9130 -2.4453 -4.3237 27 6 7.0086 -0.9653 -4.7025 28 1 6.4544 -0.6339 -5.5807 29 6 8.3431 -0.2580 -4.4581 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8494 0.5522 0.8308 36 1 3.9782 2.1748 0.1104 37 1 6.0095 0.5490 -0.7250 38 1 5.6931 0.4490 -2.4736 39 1 8.7338 2.5856 -1.9465 40 1 4.2717 -3.9915 -3.5670 41 1 4.2989 -5.3379 -0.8278 42 1 4.8231 -6.0841 -2.3561 43 1 5.7227 -4.7020 -1.6860 44 1 2.5377 -5.7448 -3.3060 45 1 2.0131 -4.9985 -1.7778 46 1 1.8086 -4.1208 -3.3128 47 1 4.3769 -0.3093 -3.8632 48 1 4.3247 -2.0276 -4.3246 49 1 7.8008 -2.9151 -3.9004 50 1 6.2960 -3.0869 -4.9528 51 1 9.0034 -0.9139 -3.8908 52 1 8.8059 -0.0149 -5.4145 53 1 8.1704 0.6591 -3.8949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434706260.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:44 Heat of formation + Delta-G solvation = 54.089003 kcal Electronic energy + Delta-G solvation = -32038.689987 eV Core-core repulsion = 28140.822006 eV Total energy + Delta-G solvation = -3897.867981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.75998 -39.36878 -39.12920 -37.78441 -36.35814 -35.20789 -34.64363 -31.02260 -30.41286 -30.01476 -28.16187 -27.98443 -27.55562 -27.00015 -24.66545 -23.91912 -23.61865 -22.62435 -21.41743 -20.87990 -20.47063 -18.74835 -18.05866 -17.34685 -17.21728 -16.94517 -16.73030 -16.28669 -16.09257 -15.69001 -15.59600 -15.33032 -15.02586 -14.94822 -14.44074 -14.16220 -13.93201 -13.88608 -13.70173 -13.35128 -13.22608 -12.98596 -12.89955 -12.81565 -12.70934 -12.64834 -12.55120 -12.28366 -12.23465 -12.17278 -12.12498 -12.10487 -11.91992 -11.72835 -11.53404 -11.11536 -11.06636 -10.82133 -10.62705 -10.60457 -10.45625 -10.28445 -8.84819 -8.18409 -6.28147 1.04501 1.43195 1.45045 1.51695 1.55075 2.14349 2.40777 2.80783 2.99902 3.07528 3.16295 3.43759 3.66945 3.73113 3.90371 3.97809 4.05692 4.14735 4.22576 4.24418 4.32071 4.36231 4.43625 4.47217 4.48059 4.55450 4.56403 4.62220 4.74374 4.79385 4.86975 4.87715 4.87807 4.93860 4.95520 5.00635 5.01138 5.04754 5.10516 5.11942 5.22236 5.23375 5.31247 5.34054 5.40458 5.48478 5.57314 5.68053 5.91428 5.99079 6.08649 6.47497 6.64121 6.80256 7.38998 8.09656 8.90627 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.005648 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.755032 B = 4956.689737 C = 7573.635875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.074 3.926 4 C 0.076 3.924 5 N -0.451 5.451 6 C 0.202 3.798 7 C -0.532 4.532 8 H 0.066 0.934 9 C 0.024 3.976 10 N -0.908 5.908 11 Si 0.959 3.041 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.360 3.640 16 N -0.325 5.325 17 N -0.323 5.323 18 C 0.172 3.828 19 C 0.002 3.998 20 C -0.133 4.133 21 C -0.132 4.132 22 N -0.480 5.480 23 C 0.148 3.852 24 C -0.183 4.183 25 H 0.067 0.933 26 C -0.145 4.145 27 C -0.130 4.130 28 H 0.120 0.880 29 C -0.126 4.126 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.104 0.896 37 H -0.047 1.047 38 H 0.060 0.940 39 H 0.264 0.736 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.126 0.874 49 H 0.093 0.907 50 H 0.127 0.873 51 H 0.044 0.956 52 H 0.070 0.930 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -10.413 -7.751 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C -0.003 4.003 4 C -0.052 4.052 5 N -0.175 5.175 6 C 0.078 3.922 7 C -0.571 4.571 8 H 0.084 0.916 9 C -0.177 4.177 10 N -0.546 5.546 11 Si 0.785 3.215 12 H -0.205 1.205 13 H -0.208 1.208 14 H -0.190 1.190 15 C 0.003 3.997 16 N -0.169 5.169 17 N -0.162 5.162 18 C -0.096 4.096 19 C -0.019 4.019 20 C -0.191 4.191 21 C -0.190 4.190 22 N -0.175 5.175 23 C 0.026 3.974 24 C -0.202 4.202 25 H 0.085 0.915 26 C -0.181 4.181 27 C -0.148 4.148 28 H 0.138 0.862 29 C -0.183 4.183 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.122 0.878 37 H -0.029 1.029 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.101 0.899 48 H 0.144 0.856 49 H 0.111 0.889 50 H 0.145 0.855 51 H 0.063 0.937 52 H 0.089 0.911 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.349 -10.659 -6.790 14.620 hybrid contribution 1.270 1.822 -0.079 2.222 sum -6.078 -8.838 -6.869 12.737 Atomic orbital electron populations 1.22738 0.81656 1.02260 1.00003 1.88338 1.19382 1.26865 1.95261 1.22519 0.91998 0.85405 1.00408 1.22095 0.94947 1.00230 0.87889 1.58926 1.23613 1.00951 1.33990 1.19990 0.79042 0.97359 0.95824 1.21226 0.93207 0.91265 1.51354 0.91592 1.25625 0.95290 1.02316 0.94509 1.70044 0.98587 1.36522 1.49481 0.85534 0.77819 0.80149 0.78008 1.20483 1.20846 1.19043 1.22979 0.99891 0.90416 0.86435 1.74568 1.23021 0.97298 1.21969 1.73744 1.20383 1.10720 1.11321 1.25321 1.01912 0.88053 0.94353 1.19727 0.99076 0.85632 0.97443 1.21738 0.97872 0.99051 1.00453 1.21751 0.93748 1.01261 1.02260 1.46252 1.48985 1.06933 1.15354 1.21499 0.91133 1.03242 0.81499 1.22479 0.92671 1.08385 0.96699 0.91506 1.23372 1.02341 0.91157 1.01261 1.22357 0.97837 0.97437 0.97186 0.86232 1.21362 0.94912 1.00591 1.01445 0.94368 0.90447 0.93116 0.91144 0.93228 0.94767 0.87816 1.02926 0.92235 0.92734 0.87836 0.93196 0.88454 0.94042 0.88573 0.93124 0.93317 0.89853 0.85625 0.88858 0.85487 0.93670 0.91144 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.38 -14.66 7.40 -148.98 -1.10 -15.76 16 3 C 0.07 2.66 6.26 71.98 0.45 3.11 16 4 C 0.08 3.26 5.18 86.30 0.45 3.70 16 5 N -0.45 -20.78 4.51 -710.37 -3.21 -23.99 16 6 C 0.20 10.32 4.13 85.56 0.35 10.67 16 7 C -0.53 -27.95 8.03 25.60 0.21 -27.75 16 8 H 0.07 3.40 7.21 -2.91 -0.02 3.38 16 9 C 0.02 1.23 5.46 84.65 0.46 1.69 16 10 N -0.91 -49.40 12.58 21.45 0.27 -49.13 16 11 Si 0.96 41.43 29.54 68.60 2.03 43.45 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 15 C 0.36 16.13 6.52 260.12 1.70 17.82 16 16 N -0.32 -15.08 8.53 -58.01 -0.50 -15.58 16 17 N -0.32 -13.66 12.18 -49.53 -0.60 -14.26 16 18 C 0.17 6.01 6.58 137.64 0.91 6.91 16 19 C 0.00 0.05 3.29 -11.54 -0.04 0.01 16 20 C -0.13 -2.88 9.18 71.98 0.66 -2.22 16 21 C -0.13 -2.61 9.18 71.98 0.66 -1.95 16 22 N -0.48 -18.07 2.81 -514.85 -1.44 -19.52 16 23 C 0.15 4.62 5.28 86.38 0.46 5.08 16 24 C -0.18 -5.93 4.02 -10.79 -0.04 -5.97 16 25 H 0.07 2.91 7.03 -2.39 -0.02 2.89 16 26 C -0.14 -3.34 9.83 30.62 0.30 -3.04 16 27 C -0.13 -3.65 6.13 -10.77 -0.07 -3.72 16 28 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 29 C -0.13 -4.10 10.19 71.98 0.73 -3.36 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.03 1.59 7.41 -2.39 -0.02 1.58 16 36 H 0.10 4.50 6.27 -2.38 -0.01 4.48 16 37 H -0.05 -2.82 8.14 -2.39 -0.02 -2.83 16 38 H 0.06 2.99 3.39 -2.39 -0.01 2.98 16 39 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 40 H 0.10 1.90 6.93 -2.39 -0.02 1.88 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 2.91 7.65 -2.38 -0.02 2.90 16 48 H 0.13 2.79 6.95 -2.39 -0.02 2.77 16 49 H 0.09 2.17 8.05 -2.39 -0.02 2.15 16 50 H 0.13 2.02 8.03 -2.39 -0.02 2.00 16 51 H 0.04 1.45 7.90 -2.39 -0.02 1.43 16 52 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 53 H 0.05 2.19 7.42 -2.39 -0.02 2.17 16 Total: -1.00 -68.74 415.62 4.75 -63.99 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.87 Total: 27.69 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 8.43 Total: 3.11 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -5.48 Total: -122.48 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -1.10 Total: -15.76 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -68.74 4.75 -63.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434706260.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.077 kcal (2) G-P(sol) polarization free energy of solvation -68.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds