Wall clock time and date at job start Sat Apr 11 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99766 * 2 1 4 4 C 1.53003 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47288 * 67.02792 * 4 3 2 6 6 C 1.46902 * 110.99846 * 280.34543 * 5 4 3 7 7 C 1.50702 * 109.46838 * 176.04001 * 6 5 4 8 8 H 1.08006 * 119.99386 * 114.53811 * 7 6 5 9 9 C 1.37877 * 119.99993 * 294.53376 * 7 6 5 10 10 N 1.31504 * 120.00193 * 359.70699 * 9 7 6 11 11 Si 1.86803 * 119.99575 * 179.43229 * 9 7 6 12 12 H 1.48497 * 109.47109 * 175.27875 * 11 9 7 13 13 H 1.48508 * 109.46953 * 295.27559 * 11 9 7 14 14 H 1.48496 * 109.47183 * 55.27665 * 11 9 7 15 15 C 1.38573 * 110.99906 * 156.38700 * 5 4 3 16 16 N 1.31218 * 126.47037 * 69.78997 * 15 5 4 17 17 N 1.28533 * 109.86005 * 179.97438 * 16 15 5 18 18 C 1.30288 * 110.05124 * 359.97438 * 17 16 15 19 19 C 1.50701 * 126.34662 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47339 * 299.98307 * 19 18 17 21 21 C 1.53004 * 109.46973 * 59.97989 * 19 18 17 22 22 N 1.36452 * 126.47524 * 249.46988 * 15 5 4 23 23 C 1.46494 * 127.13737 * 0.04494 * 22 15 5 24 24 C 1.52999 * 109.47506 * 94.78397 * 23 22 15 25 25 H 1.09003 * 115.54664 * 335.53685 * 24 23 22 26 26 C 1.53000 * 117.50221 * 121.20287 * 24 23 22 27 27 C 1.52994 * 117.50110 * 189.82724 * 24 23 22 28 28 H 1.09002 * 117.50252 * 145.02004 * 27 24 23 29 29 C 1.53003 * 117.49927 * 359.97438 * 27 24 23 30 30 H 1.09007 * 109.47289 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47100 * 299.99950 * 1 2 3 32 32 H 1.09004 * 109.47161 * 59.99924 * 1 2 3 33 33 H 1.09001 * 109.46638 * 60.00335 * 3 2 1 34 34 H 1.09002 * 109.47244 * 300.00210 * 3 2 1 35 35 H 1.08999 * 109.47248 * 307.02265 * 4 3 2 36 36 H 1.09005 * 109.46889 * 187.02652 * 4 3 2 37 37 H 1.09000 * 109.46749 * 56.03952 * 6 5 4 38 38 H 1.09000 * 109.47124 * 296.04133 * 6 5 4 39 39 H 0.97006 * 120.00122 * 359.72052 * 10 9 7 40 40 H 1.09001 * 109.47690 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47042 * 59.99586 * 20 19 18 42 42 H 1.09002 * 109.47192 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.46622 * 299.99307 * 20 19 18 44 44 H 1.08998 * 109.47302 * 60.00133 * 21 19 18 45 45 H 1.09000 * 109.47422 * 180.02562 * 21 19 18 46 46 H 1.09008 * 109.46731 * 299.99936 * 21 19 18 47 47 H 1.09005 * 109.47348 * 214.78711 * 23 22 15 48 48 H 1.09000 * 109.46882 * 334.78372 * 23 22 15 49 49 H 1.08998 * 117.49850 * 214.98292 * 26 24 23 50 50 H 1.09007 * 117.49533 * 359.97438 * 26 24 23 51 51 H 1.08998 * 109.47040 * 65.02156 * 29 27 24 52 52 H 1.09003 * 109.47275 * 185.01886 * 29 27 24 53 53 H 1.09000 * 109.46799 * 305.01481 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9815 0.6069 -1.2742 6 6 3.8090 -0.8520 -1.2800 7 6 4.1844 -1.3968 -2.6340 8 1 5.0403 -2.0476 -2.7357 9 6 3.4353 -1.0644 -3.7428 10 7 2.3897 -0.2767 -3.6179 11 14 3.9101 -1.7270 -5.4235 12 1 2.8890 -1.3208 -6.4223 13 1 5.2327 -1.1778 -5.8165 14 1 3.9861 -3.2090 -5.3680 15 6 5.2961 0.9527 -1.5432 16 7 6.3610 0.5250 -0.9068 17 7 7.4164 1.0486 -1.4206 18 6 7.0902 1.8344 -2.4073 19 6 8.0386 2.6319 -3.2651 20 6 8.8283 3.6031 -2.3852 21 6 9.0072 1.6823 -3.9729 22 7 5.7283 1.7974 -2.5238 23 6 4.9040 2.5178 -3.4972 24 6 4.6114 3.9258 -2.9751 25 1 4.6585 4.0450 -1.8927 26 6 5.0637 5.1068 -3.8362 27 6 3.5772 4.7599 -3.7338 28 1 2.9434 5.4280 -3.1505 29 6 2.9151 4.1222 -4.9569 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6885 1.8463 0.8901 34 1 1.6885 1.8464 -0.8900 35 1 3.8485 0.5392 0.8214 36 1 3.9781 2.1728 0.1264 37 1 2.7683 -1.0956 -1.0661 38 1 4.4501 -1.2967 -0.5189 39 1 2.1431 0.0673 -2.7450 40 1 7.4721 3.1932 -4.0081 41 1 9.3948 3.0417 -1.6422 42 1 9.5139 4.1802 -3.0057 43 1 8.1382 4.2796 -1.8810 44 1 8.4448 0.9904 -4.5998 45 1 9.6935 2.2590 -4.5930 46 1 9.5738 1.1210 -3.2299 47 1 5.4372 2.5854 -4.4456 48 1 3.9658 1.9829 -3.6453 49 1 5.4081 6.0031 -3.3203 50 1 5.5702 4.8806 -4.7746 51 1 2.3161 3.2678 -4.6418 52 1 2.2734 4.8550 -5.4461 53 1 3.6840 3.7897 -5.6542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434706265.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:46 Heat of formation + Delta-G solvation = 36.925076 kcal Electronic energy + Delta-G solvation = -32419.758570 eV Core-core repulsion = 28521.146306 eV Total energy + Delta-G solvation = -3898.612265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.80325 -39.47882 -39.24776 -37.81104 -36.40122 -35.16138 -34.60663 -31.29769 -29.75848 -29.63107 -28.34883 -28.04520 -27.96990 -26.81524 -24.66406 -24.23537 -23.46043 -22.71833 -21.60349 -20.77775 -20.35878 -18.93871 -18.32182 -17.61711 -17.33706 -17.00878 -16.38293 -16.32458 -15.93646 -15.79725 -15.70682 -15.27630 -15.06912 -14.92979 -14.72819 -14.36878 -14.18484 -13.87928 -13.78978 -13.22744 -13.11505 -13.02090 -13.00545 -12.89564 -12.81722 -12.68879 -12.50551 -12.34684 -12.29560 -12.22926 -12.16323 -12.09206 -12.00753 -11.93499 -11.35404 -11.13768 -10.82530 -10.75525 -10.64550 -10.54017 -10.39689 -9.82044 -9.40942 -8.49547 -6.26837 0.97633 1.43676 1.46736 1.54306 1.70747 1.99050 2.51445 2.75689 2.88931 2.93776 3.36311 3.39856 3.66623 3.70137 3.82836 3.89907 3.99149 4.05561 4.17282 4.19637 4.29992 4.33012 4.38249 4.43110 4.45153 4.53794 4.55066 4.59100 4.60253 4.73373 4.78043 4.80788 4.85734 4.86315 4.93672 4.94663 4.96767 4.98514 5.01813 5.06074 5.13344 5.22357 5.24279 5.29555 5.33853 5.42077 5.43905 5.78635 5.99734 6.11318 6.33181 6.35223 6.67869 6.82225 7.56423 7.92612 8.91868 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008661 B = 0.005506 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.240351 B = 5084.360686 C = 5384.128424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.408 6.408 3 C 0.082 3.918 4 C 0.063 3.937 5 N -0.453 5.453 6 C 0.198 3.802 7 C -0.626 4.626 8 H 0.008 0.992 9 C 0.016 3.984 10 N -0.888 5.888 11 Si 1.086 2.914 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.283 1.283 15 C 0.396 3.604 16 N -0.375 5.375 17 N -0.327 5.327 18 C 0.175 3.825 19 C 0.000 4.000 20 C -0.128 4.128 21 C -0.137 4.137 22 N -0.459 5.459 23 C 0.147 3.853 24 C -0.180 4.180 25 H 0.089 0.911 26 C -0.147 4.147 27 C -0.132 4.132 28 H 0.117 0.883 29 C -0.126 4.126 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.063 0.937 38 H -0.028 1.028 39 H 0.284 0.716 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.102 0.898 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.108 0.892 51 H 0.042 0.958 52 H 0.079 0.921 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 16.171 -2.277 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.328 6.328 3 C 0.005 3.995 4 C -0.064 4.064 5 N -0.181 5.181 6 C 0.075 3.925 7 C -0.665 4.665 8 H 0.026 0.974 9 C -0.192 4.192 10 N -0.521 5.521 11 Si 0.911 3.089 12 H -0.190 1.190 13 H -0.214 1.214 14 H -0.209 1.209 15 C 0.039 3.961 16 N -0.219 5.219 17 N -0.167 5.167 18 C -0.094 4.094 19 C -0.021 4.021 20 C -0.186 4.186 21 C -0.195 4.195 22 N -0.151 5.151 23 C 0.024 3.976 24 C -0.199 4.199 25 H 0.107 0.893 26 C -0.184 4.184 27 C -0.150 4.150 28 H 0.135 0.865 29 C -0.183 4.183 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.081 0.919 38 H -0.010 1.010 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.111 0.889 48 H 0.108 0.892 49 H 0.132 0.868 50 H 0.126 0.874 51 H 0.061 0.939 52 H 0.098 0.902 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.631 15.446 -3.220 15.863 hybrid contribution -0.200 -0.451 1.751 1.819 sum 1.431 14.995 -1.469 15.135 Atomic orbital electron populations 1.22793 0.80127 1.03020 1.00444 1.87973 1.21075 1.28373 1.95344 1.22449 0.91275 0.84903 1.00836 1.22176 0.95586 0.99042 0.89628 1.59671 1.11066 1.15708 1.31619 1.19832 0.97116 0.80717 0.94852 1.21905 1.15519 1.33587 0.95461 0.97378 1.26464 0.93255 0.94609 1.04826 1.70649 1.23756 1.28650 1.29087 0.83342 0.75933 0.76272 0.73364 1.18982 1.21392 1.20898 1.22398 0.92290 0.92066 0.89340 1.74428 0.95991 1.24033 1.27413 1.73688 1.21669 1.11050 1.10283 1.25438 0.82272 1.01870 0.99853 1.19767 0.92916 0.94608 0.94769 1.21710 0.99704 0.97644 0.99506 1.21795 0.98665 0.98987 1.00101 1.46460 1.07278 1.35354 1.25979 1.21411 0.95430 0.91396 0.89332 1.22409 1.08739 0.90698 0.98073 0.89316 1.23338 0.96296 0.97638 1.01096 1.22419 0.92333 1.01011 0.99272 0.86527 1.21369 1.00690 1.00378 0.95903 0.89835 0.92049 0.94380 0.90077 0.93134 0.94800 0.90118 0.91894 1.01002 0.90471 0.88047 0.93165 0.88340 0.92961 0.94594 0.87923 0.93022 0.88858 0.89237 0.86801 0.87360 0.93858 0.90204 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.41 -15.76 8.06 -148.98 -1.20 -16.96 16 3 C 0.08 2.82 6.26 71.98 0.45 3.27 16 4 C 0.06 2.55 5.51 86.30 0.48 3.02 16 5 N -0.45 -21.70 3.52 -710.35 -2.50 -24.20 16 6 C 0.20 11.01 4.14 85.56 0.35 11.36 16 7 C -0.63 -37.52 8.44 25.60 0.22 -37.31 16 8 H 0.01 0.51 7.81 -2.91 -0.02 0.49 16 9 C 0.02 0.88 5.41 84.66 0.46 1.34 16 10 N -0.89 -49.18 13.56 21.45 0.29 -48.89 16 11 Si 1.09 50.71 29.90 68.60 2.05 52.76 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 C 0.40 19.22 5.44 260.12 1.42 20.63 16 16 N -0.38 -19.60 12.00 -58.01 -0.70 -20.29 16 17 N -0.33 -15.35 12.18 -49.54 -0.60 -15.95 16 18 C 0.17 6.82 6.58 137.64 0.91 7.72 16 19 C 0.00 0.01 3.29 -11.54 -0.04 -0.03 16 20 C -0.13 -2.76 9.18 71.98 0.66 -2.10 16 21 C -0.14 -3.51 9.18 71.98 0.66 -2.85 16 22 N -0.46 -19.07 2.81 -514.87 -1.45 -20.52 16 23 C 0.15 5.13 5.16 86.38 0.45 5.58 16 24 C -0.18 -4.83 6.01 -10.80 -0.06 -4.89 16 25 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 26 C -0.15 -2.69 9.82 30.59 0.30 -2.39 16 27 C -0.13 -2.86 6.41 -10.80 -0.07 -2.92 16 28 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 29 C -0.13 -2.94 9.11 71.98 0.66 -2.29 16 30 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.03 1.45 7.94 -2.39 -0.02 1.43 16 36 H 0.08 2.97 7.85 -2.38 -0.02 2.95 16 37 H 0.06 3.57 5.15 -2.39 -0.01 3.56 16 38 H -0.03 -1.70 8.01 -2.39 -0.02 -1.72 16 39 H 0.28 15.79 6.55 -92.70 -0.61 15.19 16 40 H 0.10 2.27 7.07 -2.39 -0.02 2.26 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.09 2.90 7.19 -2.38 -0.02 2.88 16 48 H 0.09 3.83 7.66 -2.39 -0.02 3.82 16 49 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.11 1.74 7.97 -2.38 -0.02 1.73 16 51 H 0.04 1.28 7.93 -2.39 -0.02 1.26 16 52 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 Total: -1.00 -74.58 425.39 4.99 -69.59 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.02 Total: 24.14 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 8.08 Total: 0.33 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -4.96 Total: -129.86 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.20 Total: -16.96 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -74.58 4.99 -69.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434706265.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.515 kcal (2) G-P(sol) polarization free energy of solvation -74.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds