Wall clock time and date at job start Sat Apr 11 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47093 * 2 1 4 4 C 1.50700 * 109.47301 * 120.00202 * 2 1 3 5 5 N 1.30297 * 126.34213 * 299.95784 * 4 2 1 6 6 N 1.28537 * 110.05045 * 179.76531 * 5 4 2 7 7 C 1.31223 * 109.85855 * 0.44882 * 6 5 4 8 8 N 1.38575 * 126.47044 * 179.82057 * 7 6 5 9 9 C 1.46904 * 110.99761 * 110.02689 * 8 7 6 10 10 C 1.46896 * 111.00266 * 346.07029 * 8 7 6 11 11 H 1.09004 * 109.46873 * 309.99766 * 10 8 7 12 12 C 1.52997 * 109.47085 * 69.99705 * 10 8 7 13 13 C 1.50694 * 109.47186 * 190.00158 * 10 8 7 14 14 H 1.08003 * 120.00159 * 359.97438 * 13 10 8 15 15 C 1.37886 * 120.00189 * 180.02562 * 13 10 8 16 16 N 1.31505 * 119.99739 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00151 * 179.97438 * 15 13 10 18 18 H 1.48509 * 109.47203 * 59.99760 * 17 15 13 19 19 H 1.48496 * 109.47165 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47166 * 300.00260 * 17 15 13 21 21 N 1.36452 * 107.05260 * 359.56559 * 7 6 5 22 22 C 1.46501 * 127.13467 * 180.23805 * 21 7 6 23 23 C 1.52998 * 109.47436 * 267.21174 * 22 21 7 24 24 C 1.53002 * 109.47077 * 59.21048 * 23 22 21 25 25 O 1.42906 * 109.46896 * 299.21309 * 23 22 21 26 26 C 1.52994 * 109.47479 * 179.21209 * 23 22 21 27 27 C 1.53007 * 117.49871 * 253.75024 * 26 23 22 28 28 C 1.53003 * 117.50034 * 185.08830 * 26 23 22 29 29 H 1.08995 * 109.47473 * 60.00286 * 1 2 3 30 30 H 1.09002 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46843 * 299.99759 * 1 2 3 32 32 H 1.09001 * 109.47328 * 240.00126 * 2 1 3 33 33 H 1.08995 * 109.47160 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.46728 * 300.00171 * 3 2 1 35 35 H 1.09001 * 109.46930 * 59.99882 * 3 2 1 36 36 H 1.08994 * 109.47641 * 65.41279 * 9 8 7 37 37 H 1.09004 * 109.47048 * 185.41784 * 9 8 7 38 38 H 1.09004 * 109.46367 * 305.40882 * 9 8 7 39 39 H 1.09009 * 109.46999 * 180.02562 * 12 10 8 40 40 H 1.08999 * 109.47350 * 299.99669 * 12 10 8 41 41 H 1.08994 * 109.47414 * 60.00344 * 12 10 8 42 42 H 0.96998 * 120.00361 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.47299 * 27.21365 * 22 21 7 44 44 H 1.09005 * 109.46765 * 147.21181 * 22 21 7 45 45 H 1.08994 * 109.46925 * 59.99739 * 24 23 22 46 46 H 1.08993 * 109.47214 * 180.02562 * 24 23 22 47 47 H 1.09009 * 109.46860 * 300.00241 * 24 23 22 48 48 H 0.96695 * 113.99713 * 294.32535 * 25 23 22 49 49 H 1.09000 * 115.55040 * 39.41516 * 26 23 22 50 50 H 1.09001 * 117.49651 * 359.97438 * 27 26 23 51 51 H 1.08997 * 117.49694 * 145.02189 * 27 26 23 52 52 H 1.09001 * 117.49674 * 214.97568 * 28 26 23 53 53 H 1.08996 * 117.49943 * 359.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7957 -0.3743 2.4668 6 7 2.3727 -1.1994 3.2660 7 6 3.0216 -2.1079 2.5765 8 7 3.7646 -3.1580 3.0918 9 6 3.0989 -4.4443 2.8460 10 6 4.0251 -2.9653 4.5246 11 1 4.4195 -1.9628 4.6905 12 6 2.7218 -3.1367 5.3074 13 6 5.0307 -3.9848 4.9938 14 1 5.4356 -4.7043 4.2974 15 6 5.4333 -3.9999 6.3125 16 7 4.9400 -3.1242 7.1606 17 14 6.6793 -5.2640 6.8943 18 1 7.9446 -5.0979 6.1348 19 1 6.9427 -5.0692 8.3427 20 1 6.1417 -6.6296 6.6677 21 7 2.8218 -1.8267 1.2563 22 6 3.3448 -2.5669 0.1053 23 6 4.6712 -1.9473 -0.3396 24 6 5.6712 -1.9981 0.8173 25 8 4.4566 -0.5879 -0.7243 26 6 5.2272 -2.7324 -1.5292 27 6 6.4257 -3.6484 -1.2731 28 6 6.6125 -2.3416 -2.0482 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.0672 -4.6380 1.7738 37 1 3.6528 -5.2408 3.3429 38 1 2.0829 -4.4084 3.2390 39 1 2.9150 -2.9933 6.3706 40 1 1.9944 -2.3992 4.9681 41 1 2.3273 -4.1391 5.1415 42 1 5.2228 -3.1350 8.0884 43 1 3.5060 -3.6079 0.3855 44 1 2.6279 -2.5180 -0.7144 45 1 5.8348 -3.0350 1.1108 46 1 6.6159 -1.5564 0.5005 47 1 5.2750 -1.4387 1.6649 48 1 3.9005 -0.4843 -1.5086 49 1 4.4898 -3.0613 -2.2614 50 1 6.8183 -3.6914 -0.2571 51 1 6.4770 -4.5797 -1.8371 52 1 6.7865 -2.4138 -3.1218 53 1 7.1275 -1.5249 -1.5423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454743219.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:52 Heat of formation + Delta-G solvation = 49.772856 kcal Electronic energy + Delta-G solvation = -32318.662245 eV Core-core repulsion = 28420.607102 eV Total energy + Delta-G solvation = -3898.055143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.91772 -40.28549 -39.08246 -36.85365 -36.18368 -35.54860 -34.61697 -31.54936 -30.87669 -30.03298 -28.42680 -27.97191 -27.27739 -26.79271 -24.80291 -24.13949 -23.25502 -23.03148 -21.19221 -20.82201 -20.34919 -18.54418 -18.10636 -17.72788 -17.28393 -17.13480 -16.61199 -16.22751 -16.13738 -15.79870 -15.24902 -15.15518 -14.92061 -14.79133 -14.40179 -14.13535 -13.85506 -13.52149 -13.41301 -13.34948 -13.07811 -12.97793 -12.92335 -12.88828 -12.67455 -12.62275 -12.42629 -12.23120 -12.13251 -12.08888 -12.06006 -12.04849 -11.97534 -11.85892 -11.50335 -11.37144 -11.24138 -11.08224 -10.88102 -10.48703 -10.47544 -10.31325 -8.99886 -8.10367 -6.25405 0.96369 1.40045 1.45688 1.47171 1.54685 2.03158 2.42382 2.76197 3.07189 3.19042 3.36063 3.38963 3.50452 3.59524 3.78194 3.92455 4.04219 4.08506 4.15845 4.23320 4.25119 4.29029 4.43902 4.51134 4.52916 4.56784 4.69829 4.74428 4.82145 4.84866 4.86553 4.94179 4.95629 5.00846 5.03014 5.07046 5.09592 5.14462 5.15351 5.22011 5.24265 5.32370 5.38358 5.42625 5.47119 5.53706 5.63914 5.68546 5.93141 6.14750 6.24353 6.66640 6.84431 6.86866 7.43394 8.00415 8.96053 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.004588 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.102995 B = 6101.593127 C = 7907.140164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.010 3.990 3 C -0.135 4.135 4 C 0.193 3.807 5 N -0.340 5.340 6 N -0.372 5.372 7 C 0.364 3.636 8 N -0.448 5.448 9 C 0.037 3.963 10 C 0.247 3.753 11 H -0.008 1.008 12 C -0.154 4.154 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.968 3.032 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.263 1.263 21 N -0.465 5.465 22 C 0.080 3.920 23 C 0.162 3.838 24 C -0.128 4.128 25 O -0.556 6.556 26 C -0.177 4.177 27 C -0.181 4.181 28 C -0.160 4.160 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.261 0.739 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.019 0.981 48 H 0.387 0.613 49 H 0.139 0.861 50 H 0.086 0.914 51 H 0.113 0.887 52 H 0.114 0.886 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -0.638 -26.418 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.010 4.010 3 C -0.193 4.193 4 C -0.077 4.077 5 N -0.177 5.177 6 N -0.215 5.215 7 C 0.007 3.993 8 N -0.172 5.172 9 C -0.110 4.110 10 C 0.140 3.860 11 H 0.010 0.990 12 C -0.214 4.214 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.188 1.188 21 N -0.159 5.159 22 C -0.042 4.042 23 C 0.121 3.879 24 C -0.185 4.185 25 O -0.364 6.364 26 C -0.195 4.195 27 C -0.218 4.218 28 C -0.197 4.197 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.126 0.874 44 H 0.150 0.850 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.038 0.962 48 H 0.237 0.763 49 H 0.157 0.843 50 H 0.104 0.896 51 H 0.131 0.869 52 H 0.132 0.868 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.176 0.247 -24.741 24.945 hybrid contribution 0.307 -1.062 0.494 1.211 sum -2.869 -0.815 -24.247 24.430 Atomic orbital electron populations 1.21813 0.92469 1.02131 1.03221 1.19724 0.96524 0.95553 0.89229 1.21754 1.01104 0.93687 1.02729 1.25419 0.95968 0.88380 0.97885 1.73789 1.21989 1.22364 0.99597 1.74691 1.13753 1.06726 1.26290 1.22987 0.96197 0.97812 0.82348 1.59251 1.39041 0.99232 1.19653 1.22434 0.96696 0.89990 1.01835 1.18824 0.93091 0.95379 0.78660 0.98978 1.22217 0.98093 0.97898 1.03186 1.21259 1.23928 1.15896 0.94627 0.91009 1.25788 0.98379 0.97861 0.96760 1.70089 1.44472 1.37047 1.04395 0.85470 0.79169 0.79376 0.76748 1.19561 1.21544 1.18802 1.46136 1.40124 1.23699 1.05926 1.22960 0.97308 0.97030 0.86950 1.20767 0.92034 0.82221 0.92892 1.21705 0.98252 1.02360 0.96222 1.86715 1.74093 1.24609 1.51027 1.22840 0.92998 1.03932 0.99759 1.23197 1.01214 0.95366 1.02056 1.22891 0.97660 0.98214 1.00891 0.88311 0.93022 0.93863 0.86802 0.93000 0.88423 0.94365 0.89577 0.89314 0.96147 0.92327 0.94668 0.95001 0.92973 0.87363 0.85005 0.90316 0.92531 0.96155 0.76283 0.84287 0.89555 0.86916 0.86766 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.18 71.98 0.66 -1.78 16 2 C 0.01 0.21 2.70 -11.54 -0.03 0.17 16 3 C -0.13 -2.67 9.18 71.98 0.66 -2.01 16 4 C 0.19 6.19 6.21 137.64 0.85 7.04 16 5 N -0.34 -14.72 12.18 -49.54 -0.60 -15.33 16 6 N -0.37 -18.38 9.30 -58.01 -0.54 -18.92 16 7 C 0.36 15.50 5.10 260.11 1.33 16.83 16 8 N -0.45 -19.49 4.40 -711.01 -3.13 -22.62 16 9 C 0.04 1.35 8.39 127.69 1.07 2.42 16 10 C 0.25 13.31 2.02 44.17 0.09 13.40 16 11 H -0.01 -0.50 7.97 -2.39 -0.02 -0.52 16 12 C -0.15 -8.39 8.19 71.98 0.59 -7.80 16 13 C -0.52 -28.31 7.83 25.60 0.20 -28.11 16 14 H 0.07 3.70 7.17 -2.91 -0.02 3.68 16 15 C 0.01 0.62 5.30 84.66 0.45 1.07 16 16 N -0.92 -55.30 11.32 21.45 0.24 -55.05 16 17 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 21 N -0.46 -14.66 2.37 -514.84 -1.22 -15.88 16 22 C 0.08 1.62 4.96 86.38 0.43 2.05 16 23 C 0.16 3.26 1.00 -10.80 -0.01 3.25 16 24 C -0.13 -3.85 6.84 71.98 0.49 -3.36 16 25 O -0.56 -10.95 10.92 -148.98 -1.63 -12.57 16 26 C -0.18 -2.34 5.27 -10.79 -0.06 -2.40 16 27 C -0.18 -2.78 9.66 30.62 0.30 -2.49 16 28 C -0.16 -2.26 9.86 30.62 0.30 -1.96 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.32 5.78 -2.39 -0.01 1.31 16 33 H 0.05 1.19 7.34 -2.39 -0.02 1.17 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 2.35 5.91 -2.39 -0.01 2.34 16 37 H 0.09 3.31 6.66 -2.39 -0.02 3.29 16 38 H 0.02 0.77 6.77 -2.38 -0.02 0.75 16 39 H 0.06 3.51 6.07 -2.38 -0.01 3.49 16 40 H 0.03 1.92 5.87 -2.39 -0.01 1.91 16 41 H 0.03 1.59 6.54 -2.39 -0.02 1.58 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.11 2.20 5.77 -2.38 -0.01 2.19 16 44 H 0.13 1.51 7.36 -2.38 -0.02 1.49 16 45 H 0.08 2.41 6.74 -2.39 -0.02 2.39 16 46 H 0.06 1.65 6.96 -2.39 -0.02 1.63 16 47 H 0.02 0.80 6.47 -2.38 -0.02 0.78 16 48 H 0.39 3.84 8.01 -74.06 -0.59 3.25 16 49 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.09 1.73 5.89 -2.39 -0.01 1.72 16 51 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.08 1.46 7.28 -2.39 -0.02 1.44 16 Total: -1.00 -78.71 397.00 2.80 -75.90 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.33 Total: 22.64 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 7.32 Total: -3.66 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -5.25 Total: -127.80 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.63 Total: -12.57 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -78.71 2.80 -75.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454743219.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.677 kcal (2) G-P(sol) polarization free energy of solvation -78.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds