Wall clock time and date at job start Sat Apr 11 2020 04:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47042 * 2 1 4 4 C 1.50707 * 109.46985 * 119.99442 * 2 1 3 5 5 N 1.30286 * 126.34731 * 299.96539 * 4 2 1 6 6 N 1.28528 * 110.05397 * 180.02562 * 5 4 2 7 7 C 1.31227 * 109.85882 * 359.97438 * 6 5 4 8 8 N 1.38580 * 126.47383 * 180.02562 * 7 6 5 9 9 C 1.46896 * 110.99841 * 248.87752 * 8 7 6 10 10 C 1.46906 * 110.99602 * 12.83340 * 8 7 6 11 11 H 1.08997 * 109.47561 * 55.00007 * 10 8 7 12 12 C 1.52997 * 109.46830 * 294.99347 * 10 8 7 13 13 C 1.50701 * 109.46549 * 175.00015 * 10 8 7 14 14 H 1.07999 * 120.00544 * 359.97438 * 13 10 8 15 15 C 1.37881 * 119.99714 * 179.97438 * 13 10 8 16 16 N 1.31514 * 120.00138 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99855 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.47057 * 60.00047 * 17 15 13 19 19 H 1.48501 * 109.47020 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47353 * 300.00366 * 17 15 13 21 21 N 1.36455 * 107.05001 * 0.02562 * 7 6 5 22 22 C 1.46499 * 127.13255 * 180.26302 * 21 7 6 23 23 C 1.52999 * 109.47278 * 84.21118 * 22 21 7 24 24 C 1.53003 * 109.47296 * 60.51157 * 23 22 21 25 25 O 1.42908 * 109.46982 * 300.50984 * 23 22 21 26 26 C 1.52998 * 109.47308 * 180.51258 * 23 22 21 27 27 C 1.53001 * 117.49719 * 253.74779 * 26 23 22 28 28 C 1.53003 * 117.50124 * 185.08676 * 26 23 22 29 29 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47597 * 300.00344 * 1 2 3 31 31 H 1.09000 * 109.47338 * 60.00385 * 1 2 3 32 32 H 1.09000 * 109.47597 * 239.99656 * 2 1 3 33 33 H 1.08996 * 109.47043 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47214 * 299.99777 * 3 2 1 35 35 H 1.09000 * 109.47206 * 59.99416 * 3 2 1 36 36 H 1.08995 * 109.47347 * 56.91371 * 9 8 7 37 37 H 1.09008 * 109.46702 * 176.91151 * 9 8 7 38 38 H 1.08996 * 109.46906 * 296.90910 * 9 8 7 39 39 H 1.09000 * 109.46812 * 180.02562 * 12 10 8 40 40 H 1.08997 * 109.47587 * 300.00644 * 12 10 8 41 41 H 1.08998 * 109.47341 * 60.00857 * 12 10 8 42 42 H 0.96994 * 120.00102 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.47330 * 204.21250 * 22 21 7 44 44 H 1.09004 * 109.46987 * 324.21342 * 22 21 7 45 45 H 1.08999 * 109.46715 * 53.61879 * 24 23 22 46 46 H 1.08991 * 109.47137 * 173.62152 * 24 23 22 47 47 H 1.09007 * 109.46493 * 293.62044 * 24 23 22 48 48 H 0.96693 * 114.00023 * 299.99577 * 25 23 22 49 49 H 1.09000 * 115.55108 * 39.41135 * 26 23 22 50 50 H 1.09000 * 117.49975 * 0.02562 * 27 26 23 51 51 H 1.09000 * 117.49752 * 145.01766 * 27 26 23 52 52 H 1.09001 * 117.50073 * 214.97548 * 28 26 23 53 53 H 1.09004 * 117.49628 * 359.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7955 -0.3743 2.4669 6 7 2.3769 -1.1960 3.2661 7 6 3.0208 -2.1082 2.5766 8 7 3.7631 -3.1588 3.0920 9 6 5.1958 -2.9702 2.8284 10 6 3.5098 -3.3271 4.5293 11 1 2.4396 -3.4462 4.6982 12 6 4.0110 -2.0936 5.2831 13 6 4.2362 -4.5498 5.0275 14 1 4.8266 -5.1429 4.3448 15 6 4.1472 -4.9114 6.3551 16 7 3.4279 -4.1895 7.1864 17 14 5.0470 -6.4275 6.9725 18 1 6.5051 -6.2659 6.7417 19 1 4.7921 -6.5968 8.4257 20 1 4.5598 -7.6245 6.2412 21 7 2.8212 -1.8268 1.2564 22 6 3.3393 -2.5706 0.1055 23 6 2.4094 -3.7458 -0.2027 24 6 1.0130 -3.2172 -0.5372 25 8 2.3333 -4.6047 0.9369 26 6 2.9572 -4.5302 -1.3967 27 6 2.2316 -4.3777 -2.7350 28 6 2.1042 -5.6789 -1.9388 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 5.5198 -2.0172 3.2464 37 1 5.7600 -3.7803 3.2906 38 1 5.3707 -2.9734 1.7526 39 1 3.8234 -2.2186 6.3496 40 1 5.0811 -1.9745 5.1142 41 1 3.4856 -1.2092 4.9228 42 1 3.3649 -4.4441 8.1202 43 1 3.3903 -1.9108 -0.7605 44 1 4.3363 -2.9468 0.3349 45 1 1.0862 -2.4759 -1.3328 46 1 0.3814 -4.0423 -0.8662 47 1 0.5769 -2.7569 0.3495 48 1 3.1840 -4.9771 1.2062 49 1 4.0401 -4.6518 -1.4224 50 1 1.3641 -3.7183 -2.7650 51 1 2.8370 -4.3994 -3.6411 52 1 2.6260 -6.5561 -2.3215 53 1 1.1529 -5.8761 -1.4445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454743228.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:58 Heat of formation + Delta-G solvation = 53.032530 kcal Electronic energy + Delta-G solvation = -32313.106604 eV Core-core repulsion = 28415.192812 eV Total energy + Delta-G solvation = -3897.913793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.91787 -40.23560 -39.06430 -36.73991 -36.40577 -35.37142 -34.58535 -31.64175 -30.74975 -30.08819 -28.55876 -27.88247 -27.22703 -26.76867 -24.73210 -24.22408 -23.22644 -23.03417 -21.19351 -20.57274 -20.51102 -18.50027 -18.06697 -17.71370 -17.31282 -17.08028 -16.59269 -16.33805 -16.16163 -15.69867 -15.29773 -15.16905 -14.93535 -14.84255 -14.37237 -13.95816 -13.92310 -13.49431 -13.42381 -13.35516 -13.14447 -13.00266 -12.93796 -12.87502 -12.64465 -12.59961 -12.44155 -12.21952 -12.14748 -12.11029 -12.08265 -12.02748 -11.95087 -11.84365 -11.42913 -11.37721 -11.22383 -11.01445 -10.79983 -10.48010 -10.45506 -10.27083 -8.95968 -8.08249 -6.23061 0.96945 1.40744 1.46684 1.48583 1.55754 2.03265 2.43994 2.80092 3.09184 3.21534 3.32838 3.47632 3.49590 3.59745 3.79629 3.88777 4.03077 4.09240 4.14567 4.18510 4.23206 4.26630 4.42087 4.48504 4.56075 4.59776 4.71552 4.74579 4.77490 4.81548 4.84575 4.92480 4.94742 4.97233 5.01186 5.03486 5.07437 5.12962 5.16521 5.18437 5.30255 5.32323 5.33574 5.40189 5.44994 5.54803 5.67386 5.69763 5.94615 6.15164 6.27382 6.69852 6.86359 6.88247 7.45546 8.01187 8.98246 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.004440 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.394166 B = 6304.182027 C = 8024.164635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.003 3.997 3 C -0.137 4.137 4 C 0.180 3.820 5 N -0.334 5.334 6 N -0.374 5.374 7 C 0.377 3.623 8 N -0.442 5.442 9 C 0.036 3.964 10 C 0.248 3.752 11 H -0.009 1.009 12 C -0.160 4.160 13 C -0.517 4.517 14 H 0.075 0.925 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.968 3.032 18 H -0.264 1.264 19 H -0.291 1.291 20 H -0.270 1.270 21 N -0.465 5.465 22 C 0.079 3.921 23 C 0.148 3.852 24 C -0.140 4.140 25 O -0.562 6.562 26 C -0.188 4.188 27 C -0.156 4.156 28 C -0.174 4.174 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.017 0.983 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.026 0.974 41 H 0.045 0.955 42 H 0.260 0.740 43 H 0.134 0.866 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.031 0.969 48 H 0.383 0.617 49 H 0.120 0.880 50 H 0.107 0.893 51 H 0.114 0.886 52 H 0.102 0.898 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 3.560 -26.752 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 C -0.195 4.195 4 C -0.090 4.090 5 N -0.172 5.172 6 N -0.217 5.217 7 C 0.019 3.981 8 N -0.165 5.165 9 C -0.111 4.111 10 C 0.142 3.858 11 H 0.009 0.991 12 C -0.220 4.220 13 C -0.556 4.556 14 H 0.093 0.907 15 C -0.189 4.189 16 N -0.561 5.561 17 Si 0.793 3.207 18 H -0.188 1.188 19 H -0.217 1.217 20 H -0.195 1.195 21 N -0.160 5.160 22 C -0.043 4.043 23 C 0.107 3.893 24 C -0.196 4.196 25 O -0.369 6.369 26 C -0.206 4.206 27 C -0.193 4.193 28 C -0.211 4.211 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.152 0.848 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.084 0.916 47 H 0.050 0.950 48 H 0.232 0.768 49 H 0.138 0.862 50 H 0.126 0.874 51 H 0.132 0.868 52 H 0.120 0.880 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.428 4.032 -25.634 25.953 hybrid contribution 1.423 -1.099 0.982 2.049 sum 0.995 2.933 -24.652 24.846 Atomic orbital electron populations 1.21872 0.92511 1.02236 1.03318 1.19808 0.96906 0.95793 0.89292 1.21788 1.00827 0.93557 1.03305 1.25388 0.96629 0.88995 0.97941 1.73779 1.21221 1.22718 0.99483 1.74691 1.16747 1.04315 1.25961 1.22976 0.99977 0.92952 0.82188 1.59151 1.06942 1.31440 1.18960 1.22460 0.85895 1.01308 1.01470 1.18792 0.94458 0.93873 0.78663 0.99117 1.22323 0.97803 0.98762 1.03117 1.21297 1.30344 1.09706 0.94237 0.90659 1.25803 0.96230 0.99892 0.97012 1.70102 1.41199 1.40280 1.04551 0.85458 0.79190 0.79336 0.76680 1.18845 1.21716 1.19505 1.46125 1.40222 1.23570 1.06042 1.22981 0.98908 0.95249 0.87187 1.21029 0.95363 0.87741 0.85187 1.21986 0.94746 1.01662 1.01239 1.86661 1.36917 1.65618 1.47724 1.22811 0.99426 1.03607 0.94796 1.23223 1.02844 0.99475 0.93748 1.22874 1.01315 0.93135 1.03745 0.93150 0.93746 0.88154 0.86878 0.93006 0.88315 0.93649 0.96414 0.88999 0.89660 0.92529 0.95522 0.93610 0.93071 0.84812 0.87789 0.87867 0.91625 0.95008 0.76805 0.86157 0.87442 0.86777 0.87962 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.17 71.98 0.66 -1.99 16 2 C 0.00 0.05 2.75 -11.54 -0.03 0.02 16 3 C -0.14 -2.40 9.18 71.98 0.66 -1.74 16 4 C 0.18 5.68 5.43 137.65 0.75 6.43 16 5 N -0.33 -14.30 12.18 -49.54 -0.60 -14.90 16 6 N -0.37 -18.37 8.99 -58.00 -0.52 -18.89 16 7 C 0.38 15.94 6.14 260.11 1.60 17.54 16 8 N -0.44 -18.96 4.09 -711.00 -2.91 -21.87 16 9 C 0.04 1.26 8.62 127.69 1.10 2.36 16 10 C 0.25 13.41 2.07 44.17 0.09 13.50 16 11 H -0.01 -0.59 8.11 -2.39 -0.02 -0.61 16 12 C -0.16 -8.79 8.27 71.98 0.60 -8.19 16 13 C -0.52 -28.09 7.84 25.60 0.20 -27.89 16 14 H 0.08 3.80 6.79 -2.91 -0.02 3.78 16 15 C 0.01 0.53 5.30 84.66 0.45 0.98 16 16 N -0.92 -55.66 11.32 21.45 0.24 -55.41 16 17 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 N -0.47 -14.55 2.38 -514.85 -1.22 -15.78 16 22 C 0.08 1.61 5.06 86.38 0.44 2.05 16 23 C 0.15 3.12 0.99 -10.79 -0.01 3.11 16 24 C -0.14 -2.87 5.90 71.98 0.42 -2.45 16 25 O -0.56 -17.53 11.88 -148.98 -1.77 -19.30 16 26 C -0.19 -2.73 5.32 -10.79 -0.06 -2.78 16 27 C -0.16 -1.62 9.64 30.62 0.30 -1.33 16 28 C -0.17 -2.64 9.82 30.62 0.30 -2.34 16 29 H 0.05 1.03 6.23 -2.39 -0.01 1.02 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.42 5.94 -2.39 -0.01 1.40 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.02 0.66 6.68 -2.39 -0.02 0.65 16 37 H 0.09 3.33 6.34 -2.38 -0.02 3.32 16 38 H 0.09 2.24 5.75 -2.39 -0.01 2.23 16 39 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 40 H 0.03 1.35 6.55 -2.39 -0.02 1.33 16 41 H 0.05 2.53 5.44 -2.39 -0.01 2.52 16 42 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.13 1.70 6.99 -2.39 -0.02 1.68 16 44 H 0.10 1.97 5.73 -2.39 -0.01 1.96 16 45 H 0.10 1.34 6.27 -2.39 -0.01 1.33 16 46 H 0.06 1.34 6.54 -2.39 -0.02 1.33 16 47 H 0.03 0.90 5.87 -2.38 -0.01 0.89 16 48 H 0.38 11.29 8.80 -74.06 -0.65 10.64 16 49 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.11 0.99 5.97 -2.39 -0.01 0.98 16 51 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.08 1.53 7.25 -2.38 -0.02 1.52 16 Total: -1.00 -78.04 393.92 2.98 -75.06 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.28 Total: 28.24 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 7.46 Total: -2.72 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -5.01 Total: -126.85 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -1.77 Total: -19.30 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.04 2.98 -75.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454743228.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.091 kcal (2) G-P(sol) polarization free energy of solvation -78.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds