Wall clock time and date at job start Sat Apr 11 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99993 * 2 1 4 4 C 1.53001 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47292 * 54.99774 * 4 3 2 6 6 C 1.53001 * 109.46769 * 294.99678 * 4 3 2 7 7 C 1.53000 * 109.47154 * 175.00241 * 4 3 2 8 8 N 1.46502 * 109.46899 * 182.70014 * 7 4 3 9 9 C 1.36737 * 127.13701 * 264.67440 * 8 7 4 10 10 C 1.50704 * 126.34550 * 359.96626 * 9 8 7 11 11 C 1.52995 * 109.47293 * 270.28786 * 10 9 8 12 12 C 1.53000 * 117.49720 * 243.75005 * 11 10 9 13 13 C 1.52997 * 117.50121 * 175.08890 * 11 10 9 14 14 N 1.30289 * 107.30680 * 180.22939 * 9 8 7 15 15 N 1.28527 * 110.05090 * 359.77477 * 14 9 8 16 16 C 1.31211 * 109.86513 * 0.02562 * 15 14 9 17 17 N 1.38579 * 126.47614 * 179.97438 * 16 15 14 18 18 C 1.46901 * 111.00460 * 64.10744 * 17 16 15 19 19 C 1.46899 * 110.99571 * 300.15124 * 17 16 15 20 20 H 1.09002 * 109.47052 * 60.00577 * 19 17 16 21 21 C 1.52999 * 109.47458 * 300.00374 * 19 17 16 22 22 C 1.50705 * 109.47137 * 180.02562 * 19 17 16 23 23 H 1.07999 * 119.99870 * 0.02562 * 22 19 17 24 24 C 1.37879 * 120.00067 * 180.02562 * 22 19 17 25 25 N 1.31513 * 119.99853 * 0.02562 * 24 22 19 26 26 Si 1.86791 * 119.99786 * 180.02562 * 24 22 19 27 27 H 1.48494 * 109.47665 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47163 * 120.00152 * 26 24 22 29 29 H 1.48509 * 109.47207 * 239.99914 * 26 24 22 30 30 H 1.09007 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47361 * 299.99464 * 1 2 3 32 32 H 1.09003 * 109.47234 * 60.00121 * 1 2 3 33 33 H 1.09003 * 109.47103 * 60.00099 * 3 2 1 34 34 H 1.09007 * 109.46925 * 300.00044 * 3 2 1 35 35 H 1.09003 * 109.47131 * 60.00597 * 6 4 3 36 36 H 1.09001 * 109.47088 * 179.97438 * 6 4 3 37 37 H 1.08994 * 109.47292 * 300.00096 * 6 4 3 38 38 H 1.08995 * 109.47160 * 62.69941 * 7 4 3 39 39 H 1.08997 * 109.47011 * 302.69652 * 7 4 3 40 40 H 1.09003 * 109.47387 * 30.28955 * 10 9 8 41 41 H 1.09000 * 109.46758 * 150.28758 * 10 9 8 42 42 H 1.09002 * 115.55053 * 29.41436 * 11 10 9 43 43 H 1.08995 * 117.50484 * 359.97438 * 12 11 10 44 44 H 1.09002 * 117.49883 * 145.02271 * 12 11 10 45 45 H 1.09000 * 117.50388 * 214.98036 * 13 11 10 46 46 H 1.09005 * 117.49802 * 359.97349 * 13 11 10 47 47 H 1.08991 * 109.46848 * 65.56312 * 18 17 16 48 48 H 1.08993 * 109.47135 * 185.56385 * 18 17 16 49 49 H 1.08998 * 109.46870 * 305.56426 * 18 17 16 50 50 H 1.09003 * 109.47305 * 180.02562 * 21 19 17 51 51 H 1.09002 * 109.47154 * 300.00140 * 21 19 17 52 52 H 1.08996 * 109.47389 * 59.99857 * 21 19 17 53 53 H 0.97000 * 119.99910 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8426 6 6 3.9962 0.5366 1.3065 7 6 4.1572 2.5770 -0.1263 8 7 5.6157 2.4563 -0.1918 9 6 6.5002 2.5621 0.8456 10 6 6.1567 2.8285 2.2886 11 6 6.1409 4.3378 2.5388 12 6 7.1728 4.9025 3.5173 13 6 5.6988 4.8200 3.9219 14 7 7.6955 2.3956 0.3544 15 7 7.6265 2.1886 -0.9122 16 6 6.3733 2.2128 -1.3003 17 7 5.9074 2.0303 -2.5926 18 6 6.2067 0.6749 -3.0737 19 6 6.4602 3.0450 -3.4996 20 1 7.5478 2.9721 -3.5067 21 6 6.0454 4.4376 -3.0206 22 6 5.9319 2.8152 -4.8922 23 1 5.2531 1.9975 -5.0842 24 6 6.3153 3.6490 -5.9213 25 7 7.1424 4.6444 -5.6876 26 14 5.6599 3.3646 -7.6472 27 1 4.7527 2.1890 -7.6448 28 1 4.9114 4.5659 -8.0967 29 1 6.7942 3.1133 -8.5723 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.5533 -0.4554 1.3960 36 1 5.0827 0.4501 1.3059 37 1 3.6808 1.1527 2.1484 38 1 3.8808 3.1779 0.7401 39 1 3.7913 3.0578 -1.0335 40 1 5.1738 2.4131 2.5108 41 1 6.9025 2.3614 2.9318 42 1 5.8710 4.9538 1.6810 43 1 7.8626 4.1988 3.9830 44 1 7.5813 5.8901 3.3034 45 1 5.1382 5.7534 3.9741 46 1 5.4187 4.0620 4.6534 47 1 5.6481 -0.0516 -2.4838 48 1 5.9197 0.5897 -4.1217 49 1 7.2746 0.4811 -2.9726 50 1 6.4552 5.1905 -3.6940 51 1 4.9578 4.5104 -3.0136 52 1 6.4271 4.6040 -2.0134 53 1 7.4118 5.2312 -6.4115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460568132.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:06 Heat of formation + Delta-G solvation = 43.865379 kcal Electronic energy + Delta-G solvation = -31180.034887 eV Core-core repulsion = 27281.723576 eV Total energy + Delta-G solvation = -3898.311310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.99184 -39.29804 -38.92749 -38.31810 -37.12546 -34.94132 -33.78877 -32.41635 -31.28127 -28.88458 -28.25945 -27.87394 -27.36209 -26.24648 -25.93607 -23.59888 -23.17647 -22.51761 -21.89202 -21.16411 -20.74012 -18.55726 -18.14410 -17.69093 -17.08704 -16.98499 -16.86997 -16.60095 -16.36308 -15.89865 -15.57500 -15.45710 -15.13295 -14.89975 -14.65004 -14.31884 -14.20423 -13.85290 -13.74489 -13.57434 -13.18603 -13.05922 -12.87857 -12.73317 -12.70969 -12.59838 -12.49340 -12.31874 -12.29355 -12.25612 -12.17312 -12.07074 -11.96547 -11.73999 -11.55126 -11.26396 -11.08851 -10.95219 -10.79915 -10.59831 -10.57066 -9.88965 -9.53696 -8.15699 -6.29836 0.79534 1.33723 1.43620 1.45646 1.57543 1.86038 2.40806 2.77079 2.89629 3.07088 3.17366 3.34995 3.57697 3.81178 3.85059 3.93575 4.03221 4.06267 4.14637 4.18226 4.28618 4.35180 4.41609 4.47326 4.53767 4.55183 4.58455 4.63314 4.66399 4.73036 4.75578 4.77751 4.82308 4.86315 4.87083 4.90577 4.92770 4.98615 5.02478 5.08766 5.12585 5.19620 5.28331 5.33109 5.33556 5.37140 5.57268 5.63850 5.90240 5.97700 6.13795 6.26561 6.63907 6.81065 7.39403 7.80995 8.91784 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008564 B = 0.004206 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.562872 B = 6656.225272 C = 8852.963586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.075 3.925 4 C -0.097 4.097 5 H 0.058 0.942 6 C -0.138 4.138 7 C 0.116 3.884 8 N -0.456 5.456 9 C 0.192 3.808 10 C 0.006 3.994 11 C -0.168 4.168 12 C -0.185 4.185 13 C -0.146 4.146 14 N -0.331 5.331 15 N -0.366 5.366 16 C 0.365 3.635 17 N -0.462 5.462 18 C 0.051 3.949 19 C 0.235 3.765 20 H -0.032 1.032 21 C -0.108 4.108 22 C -0.520 4.520 23 H 0.074 0.926 24 C 0.014 3.986 25 N -0.921 5.921 26 Si 0.969 3.031 27 H -0.260 1.260 28 H -0.279 1.279 29 H -0.284 1.284 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.014 0.986 50 H 0.066 0.934 51 H 0.042 0.958 52 H -0.003 1.003 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 -3.968 19.772 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.002 4.002 4 C -0.116 4.116 5 H 0.077 0.923 6 C -0.195 4.195 7 C -0.006 4.006 8 N -0.148 5.148 9 C -0.077 4.077 10 C -0.033 4.033 11 C -0.188 4.188 12 C -0.222 4.222 13 C -0.182 4.182 14 N -0.171 5.171 15 N -0.209 5.209 16 C 0.007 3.993 17 N -0.188 5.188 18 C -0.096 4.096 19 C 0.129 3.871 20 H -0.014 1.014 21 C -0.167 4.167 22 C -0.559 4.559 23 H 0.092 0.908 24 C -0.185 4.185 25 N -0.561 5.561 26 Si 0.794 3.206 27 H -0.184 1.184 28 H -0.205 1.205 29 H -0.210 1.210 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.136 0.864 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.033 0.967 50 H 0.084 0.916 51 H 0.061 0.939 52 H 0.016 0.984 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.510 -4.057 19.602 24.150 hybrid contribution -0.226 0.423 -1.601 1.671 sum -13.736 -3.634 18.002 22.933 Atomic orbital electron populations 1.22908 0.79415 1.03672 1.00942 1.87835 1.21410 1.28326 1.95628 1.22388 0.91104 0.84892 1.01823 1.21306 0.94970 0.95166 1.00190 0.92301 1.21821 0.99857 1.01793 0.96079 1.21979 0.74128 0.98579 1.05889 1.46374 1.09357 1.52783 1.06315 1.25285 0.85392 1.03088 0.93903 1.19875 1.04741 0.95286 0.83371 1.22059 1.07594 0.94341 0.94794 1.23125 0.93388 1.02626 1.03099 1.23105 0.96268 1.03653 0.95223 1.73853 1.21249 1.19787 1.02202 1.74555 1.17770 1.22583 1.05948 1.22651 0.85997 1.01115 0.89550 1.59154 1.57797 1.05958 0.95928 1.22241 0.98367 0.86724 1.02294 1.19072 0.91107 0.87020 0.89892 1.01412 1.21526 0.99203 0.99754 0.96167 1.21349 1.28338 1.14361 0.91819 0.90817 1.25769 0.95016 0.94584 1.03171 1.70061 1.34595 1.17860 1.33545 0.85342 0.78078 0.78430 0.78792 1.18374 1.20508 1.21043 0.88867 0.92426 0.93720 0.90223 0.92808 0.91765 0.94604 0.89651 0.85438 0.89079 0.86569 0.87584 0.89966 0.87961 0.89480 0.87740 0.86365 0.91140 0.89116 0.96711 0.91562 0.93912 0.98360 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.35 10.24 -148.98 -1.53 -9.88 16 3 C 0.07 1.30 5.32 71.98 0.38 1.68 16 4 C -0.10 -2.10 2.85 -10.79 -0.03 -2.13 16 5 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 6 C -0.14 -2.59 7.77 71.98 0.56 -2.03 16 7 C 0.12 2.77 5.39 86.38 0.47 3.23 16 8 N -0.46 -14.99 2.47 -514.86 -1.27 -16.26 16 9 C 0.19 6.12 6.04 137.64 0.83 6.96 16 10 C 0.01 0.13 5.37 29.85 0.16 0.29 16 11 C -0.17 -3.25 5.72 -10.80 -0.06 -3.31 16 12 C -0.19 -3.27 10.18 30.62 0.31 -2.96 16 13 C -0.15 -1.82 10.25 30.62 0.31 -1.50 16 14 N -0.33 -13.95 12.18 -49.54 -0.60 -14.55 16 15 N -0.37 -17.60 12.06 -58.01 -0.70 -18.30 16 16 C 0.36 15.65 5.04 260.11 1.31 16.96 16 17 N -0.46 -20.78 4.66 -711.02 -3.31 -24.09 16 18 C 0.05 2.14 9.37 127.69 1.20 3.33 16 19 C 0.23 12.51 2.00 44.17 0.09 12.60 16 20 H -0.03 -2.00 8.09 -2.39 -0.02 -2.02 16 21 C -0.11 -5.59 8.84 71.98 0.64 -4.95 16 22 C -0.52 -28.14 7.80 25.60 0.20 -27.94 16 23 H 0.07 3.82 6.45 -2.91 -0.02 3.80 16 24 C 0.01 0.75 5.30 84.66 0.45 1.20 16 25 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 26 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 29 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 30 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.06 1.26 7.82 -2.39 -0.02 1.24 16 36 H 0.03 0.82 6.49 -2.39 -0.02 0.80 16 37 H 0.08 1.07 7.08 -2.39 -0.02 1.05 16 38 H 0.13 2.06 7.62 -2.39 -0.02 2.05 16 39 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.12 1.60 5.49 -2.39 -0.01 1.59 16 41 H 0.11 1.98 7.88 -2.39 -0.02 1.96 16 42 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 43 H 0.10 1.70 8.03 -2.39 -0.02 1.68 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.09 3.80 5.95 -2.39 -0.01 3.79 16 49 H 0.01 0.64 8.04 -2.39 -0.02 0.62 16 50 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 51 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 52 H 0.00 -0.14 7.22 -2.39 -0.02 -0.15 16 53 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -73.70 418.35 3.80 -69.91 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.87 Total: 18.75 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 8.06 Total: 3.02 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.64 Total: -126.68 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.53 Total: -9.88 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -73.70 3.80 -69.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460568132.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.772 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds