Wall clock time and date at job start Sat Apr 11 2020 04:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46604 * 2 1 4 4 N 1.46505 * 109.46896 * 180.02562 * 3 2 1 5 5 C 1.36933 * 120.00030 * 263.95054 * 4 3 2 6 6 H 1.07999 * 120.00660 * 186.15428 * 5 4 3 7 7 C 1.38820 * 119.99564 * 6.15312 * 5 4 3 8 8 N 1.31619 * 120.00463 * 32.93125 * 7 5 4 9 9 Si 1.86803 * 119.99537 * 212.92665 * 7 5 4 10 10 H 1.48502 * 109.47263 * 95.00288 * 9 7 5 11 11 H 1.48504 * 109.46828 * 214.99843 * 9 7 5 12 12 H 1.48496 * 109.47443 * 335.00101 * 9 7 5 13 13 C 1.46498 * 120.00081 * 83.94694 * 4 3 2 14 14 C 1.53000 * 109.47303 * 270.00166 * 13 4 3 15 15 N 1.46504 * 109.46670 * 179.97438 * 14 13 4 16 16 C 1.34776 * 119.99260 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00792 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99642 * 179.97438 * 16 15 14 19 19 C 1.53010 * 109.47143 * 179.97438 * 18 16 15 20 20 H 1.09001 * 109.46531 * 53.41035 * 19 18 16 21 21 C 1.52992 * 109.46947 * 293.40842 * 19 18 16 22 22 C 1.50701 * 109.46940 * 173.41057 * 19 18 16 23 23 C 1.39865 * 126.04410 * 66.14947 * 22 19 18 24 24 C 1.50705 * 125.89587 * 359.97438 * 23 22 19 25 25 N 1.30836 * 108.20307 * 179.81687 * 23 22 19 26 26 N 1.40083 * 108.20364 * 0.44028 * 25 23 22 27 27 H 0.97006 * 126.03483 * 179.73629 * 26 25 23 28 28 C 1.34943 * 107.92622 * 359.72022 * 26 25 23 29 29 C 1.50704 * 126.12503 * 179.97438 * 28 26 25 30 30 H 1.08995 * 109.47473 * 60.00382 * 1 2 3 31 31 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47247 * 299.99849 * 1 2 3 33 33 H 1.08996 * 109.47465 * 239.99778 * 2 1 3 34 34 H 1.09005 * 109.46916 * 119.99676 * 2 1 3 35 35 H 1.08996 * 109.47391 * 59.99733 * 3 2 1 36 36 H 1.09005 * 109.47220 * 299.99490 * 3 2 1 37 37 H 0.96992 * 120.00031 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.46716 * 149.99989 * 13 4 3 39 39 H 1.09002 * 109.47077 * 30.00110 * 13 4 3 40 40 H 1.08997 * 109.46857 * 60.00169 * 14 13 4 41 41 H 1.08993 * 109.47139 * 299.99784 * 14 13 4 42 42 H 0.96993 * 120.00670 * 0.02562 * 15 14 13 43 43 H 1.09007 * 109.47183 * 60.00389 * 18 16 15 44 44 H 1.08999 * 109.47521 * 300.00379 * 18 16 15 45 45 H 1.09003 * 109.47252 * 59.99985 * 21 19 18 46 46 H 1.09005 * 109.47013 * 180.02562 * 21 19 18 47 47 H 1.09002 * 109.47434 * 300.00001 * 21 19 18 48 48 H 1.09004 * 109.46709 * 94.90103 * 24 23 22 49 49 H 1.08995 * 109.46989 * 214.89930 * 24 23 22 50 50 H 1.08997 * 109.47206 * 334.90353 * 24 23 22 51 51 H 1.08991 * 109.47358 * 270.02167 * 29 28 26 52 52 H 1.08995 * 109.47099 * 30.02646 * 29 28 26 53 53 H 1.09003 * 109.46887 * 150.01945 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.5675 1.1784 6 1 5.2654 1.6675 1.1702 7 6 3.5025 1.5654 2.3843 8 7 2.4077 0.8468 2.5165 9 14 4.1310 2.5826 3.8195 10 1 3.4405 3.8972 3.8346 11 1 3.8584 1.8657 5.0912 12 1 5.5937 2.7935 3.6738 13 6 4.2370 1.3091 -1.2626 14 6 4.4919 -0.1719 -1.5501 15 7 5.2234 -0.3053 -2.8124 16 6 5.5605 -1.5274 -3.2698 17 8 5.2580 -2.5167 -2.6367 18 6 6.3124 -1.6648 -4.5685 19 6 6.5686 -3.1458 -4.8554 20 1 5.6264 -3.6922 -4.8134 21 6 7.5319 -3.7088 -3.8085 22 6 7.1749 -3.2942 -6.2271 23 6 8.4360 -2.8373 -6.6233 24 6 9.4262 -2.1092 -5.7512 25 7 8.6089 -3.1541 -7.8809 26 7 7.4574 -3.8148 -8.3281 27 1 7.3081 -4.1590 -9.2226 28 6 6.5928 -3.8880 -7.2946 29 6 5.2240 -4.5177 -7.3244 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9564 -0.8901 37 1 1.9271 0.8458 3.3589 38 1 5.1893 1.8338 -1.1874 39 1 3.6475 1.7401 -2.0719 40 1 3.5395 -0.6966 -1.6252 41 1 5.0813 -0.6028 -0.7409 42 1 5.4657 0.4858 -3.3186 43 1 7.2647 -1.1395 -4.4944 44 1 5.7221 -1.2345 -5.3775 45 1 7.0934 -3.6014 -2.8163 46 1 7.7147 -4.7637 -4.0131 47 1 8.4740 -3.1623 -3.8504 48 1 10.1328 -2.8238 -5.3292 49 1 9.9656 -1.3747 -6.3491 50 1 8.8962 -1.6026 -4.9446 51 1 4.4855 -3.7686 -7.6098 52 1 5.2143 -5.3320 -8.0488 53 1 4.9821 -4.9081 -6.3358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481139690.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:21 Heat of formation + Delta-G solvation = 18.903048 kcal Electronic energy + Delta-G solvation = -29539.132702 eV Core-core repulsion = 25639.738944 eV Total energy + Delta-G solvation = -3899.393758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.40559 -40.66443 -38.34621 -36.44470 -35.62730 -34.22659 -33.76468 -33.16951 -31.54548 -30.07608 -29.00390 -28.17766 -27.63673 -27.33610 -25.11699 -23.39632 -22.36228 -21.88863 -21.13563 -21.08124 -20.02685 -18.73499 -17.97873 -17.88076 -16.95721 -16.62663 -16.56509 -16.05773 -15.86674 -15.52340 -15.42084 -14.80591 -14.70054 -14.61533 -14.31999 -14.19238 -14.03236 -13.98660 -13.71467 -13.50398 -13.44101 -13.36966 -13.11035 -13.00724 -12.82677 -12.76444 -12.62785 -12.40175 -12.25000 -12.15645 -12.06847 -11.82579 -11.77356 -11.67228 -11.54169 -11.16145 -11.04985 -10.66343 -10.27587 -10.16057 -9.89432 -9.29003 -8.87671 -7.83851 -5.05957 0.92358 1.49614 1.54488 1.60610 1.73538 1.80882 1.99871 2.35656 2.61675 3.24797 3.67088 3.77444 3.80899 3.89295 4.08875 4.23218 4.27173 4.28906 4.37825 4.45080 4.51765 4.54705 4.64101 4.66951 4.72341 4.74053 4.78123 4.80247 4.85425 4.86855 4.96429 4.98870 5.07068 5.11403 5.13638 5.19036 5.19576 5.31658 5.33897 5.43299 5.46114 5.47609 5.51848 5.61971 5.71143 5.81992 5.85395 6.19158 6.34955 6.47165 6.75022 6.77981 7.22322 7.45876 7.94727 8.34645 9.19572 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.002215 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.807777 B =12636.090149 C =13515.443361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.124 4.124 3 C 0.175 3.825 4 N -0.607 5.607 5 C -0.267 4.267 6 H 0.072 0.928 7 C -0.040 4.040 8 N -0.900 5.900 9 Si 0.941 3.059 10 H -0.290 1.290 11 H -0.303 1.303 12 H -0.275 1.275 13 C 0.146 3.854 14 C 0.112 3.888 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.584 6.584 18 C -0.122 4.122 19 C 0.013 3.987 20 H 0.071 0.929 21 C -0.149 4.149 22 C -0.243 4.243 23 C 0.082 3.918 24 C -0.082 4.082 25 N -0.331 5.331 26 N -0.473 5.473 27 H 0.448 0.552 28 C 0.096 3.904 29 C -0.096 4.096 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.026 0.974 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.030 0.970 37 H 0.247 0.753 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.026 0.974 42 H 0.414 0.586 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.093 0.907 52 H 0.091 0.909 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.175 -6.131 -23.231 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.164 4.164 3 C 0.050 3.950 4 N -0.328 5.328 5 C -0.397 4.397 6 H 0.090 0.910 7 C -0.237 4.237 8 N -0.545 5.545 9 Si 0.771 3.229 10 H -0.217 1.217 11 H -0.231 1.231 12 H -0.200 1.200 13 C 0.018 3.982 14 C -0.015 4.015 15 N -0.369 5.369 16 C 0.292 3.708 17 O -0.465 6.465 18 C -0.162 4.162 19 C -0.007 4.007 20 H 0.089 0.911 21 C -0.206 4.206 22 C -0.254 4.254 23 C -0.085 4.085 24 C -0.141 4.141 25 N -0.155 5.155 26 N -0.183 5.183 27 H 0.294 0.706 28 C -0.034 4.034 29 C -0.154 4.154 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.108 0.892 51 H 0.112 0.888 52 H 0.109 0.891 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.667 -6.755 -23.630 25.745 hybrid contribution -0.350 0.162 1.282 1.339 sum 7.317 -6.593 -22.348 24.422 Atomic orbital electron populations 1.21541 0.96080 1.00462 1.00656 1.22019 0.95088 0.99614 0.99674 1.20748 0.81827 0.94658 0.97807 1.44460 1.02192 1.83818 1.02294 1.19415 0.91960 1.43549 0.84742 0.90976 1.25244 0.98660 1.00770 0.99042 1.70382 1.21586 1.37576 1.25003 0.85636 0.78117 0.79645 0.79484 1.21748 1.23086 1.19953 1.21069 0.96919 0.91949 0.88221 1.22057 0.94535 1.00484 0.84407 1.46002 1.57837 1.08951 1.24090 1.21385 0.78965 0.82583 0.87877 1.90674 1.56288 1.38689 1.60802 1.21803 1.01855 0.99084 0.93465 1.18982 0.98251 0.94051 0.89379 0.91070 1.21955 0.99412 1.00653 0.98560 1.19700 0.96723 1.12254 0.96689 1.22505 0.95757 0.98129 0.92064 1.20477 0.96428 0.99556 0.97604 1.77216 1.06484 1.18183 1.13573 1.46156 1.11907 1.47642 1.12556 0.70579 1.21300 0.94816 0.99082 0.88155 1.20603 0.88758 1.01151 1.04862 0.92537 0.93512 0.94116 0.95534 0.92389 0.92990 0.95139 0.94392 0.92037 0.91136 0.94032 0.95572 0.74906 0.86875 0.87144 0.93388 0.93309 0.91367 0.89904 0.90182 0.89174 0.88832 0.89068 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.91 71.98 0.71 -4.10 16 2 C -0.12 -5.56 5.66 30.60 0.17 -5.39 16 3 C 0.17 8.01 4.93 86.38 0.43 8.44 16 4 N -0.61 -28.44 2.54 -701.98 -1.78 -30.22 16 5 C -0.27 -14.09 9.64 84.04 0.81 -13.28 16 6 H 0.07 3.77 8.00 -2.91 -0.02 3.74 16 7 C -0.04 -2.19 4.70 84.86 0.40 -1.79 16 8 N -0.90 -50.43 9.08 21.65 0.20 -50.24 16 9 Si 0.94 44.06 29.66 68.60 2.03 46.09 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.15 5.28 5.82 86.38 0.50 5.79 16 14 C 0.11 4.14 5.87 86.38 0.51 4.65 16 15 N -0.72 -19.22 5.56 -463.06 -2.57 -21.79 16 16 C 0.50 14.10 7.55 87.66 0.66 14.76 16 17 O -0.58 -22.03 14.06 -3.03 -0.04 -22.07 16 18 C -0.12 -2.28 5.01 29.85 0.15 -2.13 16 19 C 0.01 0.27 2.13 -11.54 -0.02 0.25 16 20 H 0.07 1.62 6.51 -2.39 -0.02 1.61 16 21 C -0.15 -3.36 8.73 71.98 0.63 -2.73 16 22 C -0.24 -4.57 4.80 -20.14 -0.10 -4.66 16 23 C 0.08 1.59 7.06 43.10 0.30 1.89 16 24 C -0.08 -1.20 8.79 71.24 0.63 -0.58 16 25 N -0.33 -7.00 12.70 -47.38 -0.60 -7.60 16 26 N -0.47 -7.46 7.36 -48.00 -0.35 -7.82 16 27 H 0.45 4.20 8.96 -213.32 -1.91 2.29 16 28 C 0.10 1.53 7.21 41.41 0.30 1.82 16 29 C -0.10 -0.97 10.11 71.24 0.72 -0.24 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.15 5.97 -2.39 -0.01 1.13 16 34 H 0.06 3.11 6.33 -2.38 -0.02 3.09 16 35 H 0.05 2.70 5.97 -2.39 -0.01 2.69 16 36 H 0.03 1.23 7.98 -2.38 -0.02 1.22 16 37 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 38 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 39 H 0.07 2.18 7.95 -2.39 -0.02 2.16 16 40 H 0.04 1.73 5.91 -2.39 -0.01 1.72 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.41 7.79 8.47 -92.71 -0.79 7.01 16 43 H 0.11 1.66 5.81 -2.38 -0.01 1.65 16 44 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.38 6.10 -2.39 -0.01 1.36 16 46 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.07 1.30 5.42 -2.39 -0.01 1.28 16 48 H 0.08 1.12 8.07 -2.39 -0.02 1.10 16 49 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.09 1.14 4.59 -2.39 -0.01 1.13 16 51 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.08 1.00 7.06 -2.39 -0.02 0.98 16 Total: -1.00 -71.08 408.90 1.91 -69.17 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -1.76 Total: 21.77 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.80 Total: 2.70 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -5.11 Total: -117.67 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.07 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.08 1.91 -69.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481139690.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.075 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds