Wall clock time and date at job start Sat Apr 11 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46778 * 2 1 4 4 C 1.36942 * 119.99952 * 264.28405 * 3 2 1 5 5 H 1.08002 * 119.99988 * 188.63903 * 4 3 2 6 6 C 1.38817 * 119.99730 * 8.64750 * 4 3 2 7 7 N 1.31616 * 120.00527 * 24.59739 * 6 4 3 8 8 Si 1.86805 * 119.99607 * 204.60149 * 6 4 3 9 9 H 1.48501 * 109.47179 * 85.02687 * 8 6 4 10 10 H 1.48501 * 109.46826 * 205.02305 * 8 6 4 11 11 H 1.48494 * 109.47020 * 325.01979 * 8 6 4 12 12 C 1.46494 * 120.00219 * 84.29386 * 3 2 1 13 13 C 1.53004 * 109.47010 * 269.99453 * 12 3 2 14 14 C 1.52996 * 109.47321 * 179.97438 * 13 12 3 15 15 N 1.46504 * 109.47187 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99843 * 179.97438 * 15 14 13 17 17 O 1.21606 * 120.00204 * 359.73013 * 16 15 14 18 18 C 1.47430 * 119.99607 * 179.97438 * 16 15 14 19 19 C 1.41282 * 126.41562 * 359.41754 * 18 16 15 20 20 N 1.30449 * 108.02471 * 179.87932 * 19 18 16 21 21 N 1.39942 * 108.89476 * 0.38018 * 20 19 18 22 22 C 1.46502 * 125.75307 * 179.75389 * 21 20 19 23 23 C 1.52999 * 109.47158 * 270.00273 * 22 21 20 24 24 C 1.52994 * 109.47403 * 65.00043 * 23 22 21 25 25 C 1.53001 * 109.47006 * 185.00521 * 23 22 21 26 26 C 1.34257 * 108.48944 * 359.75732 * 21 20 19 27 27 C 1.50703 * 126.28994 * 179.97438 * 26 21 20 28 28 H 1.09004 * 109.47455 * 60.00135 * 1 2 3 29 29 H 1.09004 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47280 * 300.00322 * 1 2 3 31 31 H 1.08996 * 109.47064 * 239.99779 * 2 1 3 32 32 H 1.08997 * 109.46807 * 119.99791 * 2 1 3 33 33 H 0.96993 * 120.00109 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47459 * 149.99555 * 12 3 2 35 35 H 1.08998 * 109.47469 * 29.99068 * 12 3 2 36 36 H 1.09003 * 109.46927 * 59.99776 * 13 12 3 37 37 H 1.08999 * 109.47195 * 299.99944 * 13 12 3 38 38 H 1.09003 * 109.47233 * 60.00050 * 14 13 12 39 39 H 1.08999 * 109.47011 * 300.00143 * 14 13 12 40 40 H 0.97000 * 119.99792 * 359.97438 * 15 14 13 41 41 H 1.08006 * 125.99055 * 0.03409 * 19 18 16 42 42 H 1.09000 * 109.46898 * 30.00328 * 22 21 20 43 43 H 1.08999 * 109.46701 * 150.00157 * 22 21 20 44 44 H 1.09006 * 109.46597 * 304.99965 * 23 22 21 45 45 H 1.09008 * 109.47026 * 300.00455 * 24 23 22 46 46 H 1.09003 * 109.47086 * 59.99619 * 24 23 22 47 47 H 1.08998 * 109.47151 * 180.02562 * 24 23 22 48 48 H 1.08997 * 109.47137 * 59.99811 * 25 23 22 49 49 H 1.08996 * 109.46788 * 180.02562 * 25 23 22 50 50 H 1.09000 * 109.46578 * 299.99262 * 25 23 22 51 51 H 1.08999 * 109.47037 * 269.99720 * 27 26 21 52 52 H 1.09003 * 109.46833 * 30.00095 * 27 26 21 53 53 H 1.08997 * 109.47185 * 149.99754 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3578 1.9874 -1.1801 5 1 2.8470 2.9503 -1.1714 6 6 2.0730 1.3644 -2.3874 7 7 1.0958 0.4857 -2.4603 8 14 3.0770 1.7730 -3.9088 9 1 4.3046 0.9377 -3.9309 10 1 2.2689 1.4975 -5.1238 11 1 3.4555 3.2087 -3.8812 12 6 2.1434 2.1139 1.2624 13 6 0.8337 2.8475 1.5583 14 6 0.9642 3.6122 2.8770 15 7 -0.2901 4.3141 3.1607 16 6 -0.4083 5.0576 4.2786 17 8 0.5245 5.1418 5.0543 18 6 -1.6703 5.7643 4.5637 19 6 -2.8311 5.7661 3.7583 20 7 -3.7313 6.5023 4.3493 21 7 -3.1945 7.0065 5.5392 22 6 -3.8877 7.8817 6.4878 23 6 -3.6410 9.3430 6.1076 24 6 -4.2814 9.6315 4.7484 25 6 -4.2596 10.2570 7.1673 26 6 -1.9371 6.5531 5.6648 27 6 -0.9906 6.8510 6.7991 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 0.8972 0.0502 -3.3039 34 1 2.9552 2.8371 1.1838 35 1 2.3578 1.4133 2.0694 36 1 0.0220 2.1242 1.6369 37 1 0.6193 3.5481 0.7513 38 1 1.7760 4.3354 2.7989 39 1 1.1784 2.9112 3.6838 40 1 -1.0354 4.2437 2.5439 41 1 -2.9527 5.2467 2.8192 42 1 -4.9574 7.6742 6.4585 43 1 -3.5096 7.6990 7.4936 44 1 -2.5682 9.5273 6.0503 45 1 -3.8407 8.9803 3.9936 46 1 -5.3542 9.4471 4.8057 47 1 -4.1052 10.6725 4.4775 48 1 -3.8033 10.0515 8.1356 49 1 -4.0842 11.2981 6.8962 50 1 -5.3324 10.0727 7.2245 51 1 -0.4147 7.7466 6.5660 52 1 -1.5600 7.0130 7.7143 53 1 -0.3126 6.0088 6.9372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490356254.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:57 Heat of formation + Delta-G solvation = 26.847932 kcal Electronic energy + Delta-G solvation = -28976.992621 eV Core-core repulsion = 25077.943379 eV Total energy + Delta-G solvation = -3899.049242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.53424 -40.19747 -38.23674 -37.41511 -36.19941 -33.95681 -33.53463 -32.62282 -31.95519 -30.63026 -28.53476 -28.10066 -27.40910 -26.66752 -25.06673 -23.43847 -22.60610 -21.99746 -21.94114 -21.02096 -20.33045 -18.67634 -18.54444 -17.12244 -16.90351 -16.65513 -16.50607 -16.39986 -16.21387 -15.59655 -15.37632 -15.15252 -14.83662 -14.64313 -14.44086 -14.27049 -14.07092 -13.83389 -13.69062 -13.65568 -13.26961 -13.26361 -13.11938 -13.08120 -12.85427 -12.82117 -12.57032 -12.51413 -12.33114 -12.12323 -12.06768 -11.94635 -11.86802 -11.71339 -11.62630 -11.33010 -11.13014 -10.86435 -10.35227 -10.30272 -10.08620 -9.54466 -8.78816 -7.76106 -5.06954 0.50600 1.15493 1.36445 1.49988 1.53873 1.59286 2.37262 2.48467 2.58661 3.32845 3.44923 3.57763 3.69923 3.71670 3.84935 3.95047 4.10455 4.13862 4.18083 4.32224 4.37579 4.45399 4.53491 4.56989 4.60963 4.67000 4.72267 4.75674 4.81118 4.86852 4.90398 4.93169 4.98200 5.01575 5.08834 5.12179 5.15891 5.24209 5.30829 5.31693 5.35031 5.39101 5.43879 5.53821 5.60815 5.67547 5.86216 5.92178 6.21747 6.41538 6.51774 6.69259 7.27194 7.33929 7.99493 8.39315 9.25680 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.001919 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.695278 B =14586.602001 C =14996.959139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 N -0.612 5.612 4 C -0.252 4.252 5 H 0.071 0.929 6 C -0.052 4.052 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.292 1.292 10 H -0.300 1.300 11 H -0.276 1.276 12 C 0.151 3.849 13 C -0.133 4.133 14 C 0.136 3.864 15 N -0.718 5.718 16 C 0.591 3.409 17 O -0.585 6.585 18 C -0.323 4.323 19 C 0.080 3.920 20 N -0.313 5.313 21 N -0.351 5.351 22 C 0.122 3.878 23 C -0.107 4.107 24 C -0.146 4.146 25 C -0.140 4.140 26 C 0.157 3.843 27 C -0.095 4.095 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.244 0.756 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.408 0.592 41 H 0.206 0.794 42 H 0.105 0.895 43 H 0.123 0.877 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.101 0.899 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.090 16.928 22.103 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.334 5.334 4 C -0.382 4.382 5 H 0.089 0.911 6 C -0.247 4.247 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.220 1.220 10 H -0.227 1.227 11 H -0.202 1.202 12 C 0.024 3.976 13 C -0.174 4.174 14 C 0.012 3.988 15 N -0.369 5.369 16 C 0.381 3.619 17 O -0.467 6.467 18 C -0.338 4.338 19 C -0.107 4.107 20 N -0.132 5.132 21 N -0.130 5.130 22 C 0.002 3.998 23 C -0.127 4.127 24 C -0.203 4.203 25 C -0.198 4.198 26 C 0.023 3.977 27 C -0.153 4.153 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.244 0.756 41 H 0.223 0.777 42 H 0.123 0.877 43 H 0.141 0.859 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.111 0.889 52 H 0.119 0.881 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.753 17.440 22.521 31.209 hybrid contribution 0.804 -0.459 -1.813 2.035 sum -11.950 16.981 20.709 29.326 Atomic orbital electron populations 1.22195 0.98520 0.98621 1.00192 1.20696 0.93147 0.84532 0.97477 1.44407 1.76049 1.10622 1.02282 1.19498 1.30575 1.03459 0.84696 0.91106 1.25321 0.98988 1.00879 0.99528 1.70303 1.28213 1.32988 1.24780 0.85503 0.78711 0.77670 0.79926 1.21956 1.22672 1.20180 1.20828 0.94838 0.94512 0.87406 1.22353 1.01094 0.99064 0.94860 1.21197 0.85715 0.95017 0.96886 1.45796 1.17217 1.49881 1.23966 1.17475 0.86184 0.77695 0.80573 1.90686 1.41699 1.65532 1.48825 1.20021 0.97493 1.14788 1.01477 1.24356 0.89894 0.96471 0.99997 1.77149 1.22910 1.16842 0.96284 1.48751 1.09390 1.37228 1.17658 1.22338 0.99066 0.87795 0.90582 1.21494 1.01106 0.93284 0.96787 1.21808 1.00953 1.01192 0.96359 1.21748 1.01358 0.98892 0.97776 1.21840 0.86816 0.92340 0.96676 1.20713 0.96879 1.04450 0.93266 0.92370 0.95181 0.95069 0.92704 0.95982 0.94593 0.93404 0.92539 0.91973 0.93128 0.92355 0.91809 0.75647 0.77742 0.87699 0.85946 0.91174 0.94613 0.92106 0.92180 0.90781 0.91744 0.91582 0.88898 0.88086 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.58 71.98 0.69 -5.39 16 2 C 0.17 7.90 5.64 86.38 0.49 8.39 16 3 N -0.61 -29.35 2.54 -702.02 -1.78 -31.13 16 4 C -0.25 -13.43 9.70 84.03 0.82 -12.62 16 5 H 0.07 3.72 7.93 -2.91 -0.02 3.70 16 6 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 7 N -0.92 -51.38 8.54 21.65 0.18 -51.19 16 8 Si 0.95 44.66 29.62 68.60 2.03 46.70 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.15 5.81 5.71 86.38 0.49 6.31 16 13 C -0.13 -4.50 5.53 30.59 0.17 -4.33 16 14 C 0.14 4.01 5.67 86.38 0.49 4.50 16 15 N -0.72 -19.29 5.55 -466.36 -2.59 -21.88 16 16 C 0.59 17.10 7.81 86.66 0.68 17.78 16 17 O -0.59 -19.97 14.84 -4.05 -0.06 -20.03 16 18 C -0.32 -7.95 6.13 -20.15 -0.12 -8.07 16 19 C 0.08 1.77 11.50 85.65 0.99 2.75 16 20 N -0.31 -6.99 11.55 -56.28 -0.65 -7.64 16 21 N -0.35 -6.38 3.19 -332.99 -1.06 -7.44 16 22 C 0.12 1.24 5.60 86.38 0.48 1.72 16 23 C -0.11 -1.02 3.13 -10.80 -0.03 -1.06 16 24 C -0.15 -1.97 9.04 71.98 0.65 -1.31 16 25 C -0.14 -0.69 9.19 71.98 0.66 -0.02 16 26 C 0.16 3.24 7.01 42.14 0.30 3.53 16 27 C -0.10 -1.47 9.57 71.24 0.68 -0.79 16 28 H 0.06 3.00 6.28 -2.39 -0.01 2.99 16 29 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.03 1.25 5.98 -2.38 -0.01 1.23 16 31 H 0.05 2.96 5.87 -2.39 -0.01 2.94 16 32 H 0.02 0.94 7.97 -2.39 -0.02 0.92 16 33 H 0.24 13.54 8.31 -92.71 -0.77 12.77 16 34 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 35 H 0.06 1.98 7.95 -2.39 -0.02 1.97 16 36 H 0.06 2.15 5.93 -2.39 -0.01 2.14 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.41 9.35 7.43 -92.71 -0.69 8.66 16 41 H 0.21 3.44 7.50 -2.91 -0.02 3.42 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.12 0.59 7.02 -2.39 -0.02 0.57 16 44 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.03 0.68 6.94 -2.38 -0.02 0.66 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 49 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 51 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.10 0.84 7.05 -2.39 -0.02 0.83 16 53 H 0.09 1.78 6.50 -2.39 -0.02 1.77 16 Total: -1.00 -67.92 417.26 4.12 -63.80 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.20 Total: 19.87 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 7.84 Total: 8.95 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -5.89 Total: -119.29 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.03 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.92 4.12 -63.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490356254.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.646 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds