Wall clock time and date at job start Sat Apr 11 2020 04:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47062 * 2 1 4 4 C 1.36941 * 119.99810 * 275.31085 * 3 2 1 5 5 H 1.08004 * 119.99649 * 37.57145 * 4 3 2 6 6 C 1.38810 * 120.00336 * 217.57889 * 4 3 2 7 7 N 1.31626 * 119.99803 * 21.42681 * 6 4 3 8 8 Si 1.86794 * 120.00219 * 201.43418 * 6 4 3 9 9 H 1.48500 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99596 * 8 6 4 11 11 H 1.48508 * 109.46825 * 239.99586 * 8 6 4 12 12 C 1.46494 * 120.00422 * 95.30964 * 3 2 1 13 13 C 1.52999 * 109.47048 * 270.00094 * 12 3 2 14 14 C 1.53009 * 109.47114 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.46989 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99330 * 180.27800 * 15 14 13 17 17 O 1.21280 * 120.00518 * 359.72399 * 16 15 14 18 18 C 1.50704 * 119.99713 * 179.72480 * 16 15 14 19 19 C 1.52996 * 109.47474 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.47145 * 305.00232 * 19 18 16 21 21 C 1.53002 * 109.47208 * 64.99448 * 19 18 16 22 22 N 1.46497 * 109.47364 * 184.99927 * 19 18 16 23 23 N 1.40082 * 126.03678 * 300.02260 * 22 19 18 24 24 C 1.30837 * 108.20826 * 180.02562 * 23 22 19 25 25 C 1.50695 * 125.90135 * 180.02562 * 24 23 22 26 26 C 1.39867 * 108.19788 * 0.02562 * 24 23 22 27 27 C 1.34949 * 126.03789 * 119.71742 * 22 19 18 28 28 C 1.50693 * 126.12668 * 359.97438 * 27 22 19 29 29 H 1.09005 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46781 * 299.99763 * 1 2 3 31 31 H 1.08992 * 109.47086 * 60.00411 * 1 2 3 32 32 H 1.08998 * 109.47228 * 239.99608 * 2 1 3 33 33 H 1.09005 * 109.47285 * 119.99761 * 2 1 3 34 34 H 0.96991 * 119.99936 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47549 * 150.00013 * 12 3 2 36 36 H 1.09007 * 109.47059 * 29.99918 * 12 3 2 37 37 H 1.09001 * 109.47294 * 60.00296 * 13 12 3 38 38 H 1.08992 * 109.47402 * 299.99547 * 13 12 3 39 39 H 1.09001 * 109.46608 * 60.00109 * 14 13 12 40 40 H 1.08997 * 109.47092 * 300.00510 * 14 13 12 41 41 H 0.96996 * 119.99758 * 359.97438 * 15 14 13 42 42 H 1.09006 * 109.46777 * 299.99815 * 18 16 15 43 43 H 1.08994 * 109.47011 * 59.99367 * 18 16 15 44 44 H 1.08995 * 109.47214 * 180.02562 * 21 19 18 45 45 H 1.09001 * 109.47288 * 300.00882 * 21 19 18 46 46 H 1.09007 * 109.46713 * 60.00464 * 21 19 18 47 47 H 1.09007 * 109.46987 * 89.97498 * 25 24 23 48 48 H 1.08998 * 109.47380 * 209.97312 * 25 24 23 49 49 H 1.09001 * 109.47565 * 329.97842 * 25 24 23 50 50 H 1.08007 * 126.03562 * 179.97438 * 26 24 23 51 51 H 1.09001 * 109.47562 * 90.00033 * 28 27 22 52 52 H 1.09000 * 109.47096 * 210.00395 * 28 27 22 53 53 H 1.09009 * 109.47458 * 330.00188 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9289 -1.3730 7 7 4.3027 2.7981 -0.6493 8 14 3.0991 4.2796 -2.6585 9 1 1.7773 4.2135 -3.3321 10 1 3.2548 5.6023 -2.0017 11 1 4.1765 4.0963 -3.6641 12 6 2.3732 2.0328 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5130 3.4183 3.1561 15 7 0.3345 4.0934 3.7053 16 6 0.4256 4.7686 4.8681 17 8 1.4819 4.8132 5.4624 18 6 -0.7851 5.4682 5.4300 19 6 -0.4135 6.1523 6.7471 20 1 0.0197 5.4194 7.4276 21 6 0.6054 7.2611 6.4761 22 7 -1.6153 6.7309 7.3530 23 7 -2.4405 7.7058 6.7779 24 6 -3.4092 7.9684 7.6172 25 6 -4.5235 8.9591 7.3987 26 6 -3.2319 7.1707 8.7523 27 6 -2.1261 6.4145 8.5613 28 6 -1.5631 5.4039 9.5270 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0488 3.4031 -0.7832 35 1 3.1617 2.7642 1.0859 36 1 2.7255 1.2834 1.9721 37 1 0.3541 2.0069 2.0139 38 1 0.7903 3.4876 1.1276 39 1 2.3016 4.1497 2.9790 40 1 1.8652 2.6687 3.8647 41 1 -0.5102 4.0580 3.2297 42 1 -1.1357 6.2157 4.7182 43 1 -1.5751 4.7392 5.6099 44 1 0.8705 7.7482 7.4145 45 1 1.4995 6.8307 6.0252 46 1 0.1722 7.9942 5.7955 47 1 -5.3641 8.4600 6.9163 48 1 -4.8436 9.3635 8.3589 49 1 -4.1691 9.7703 6.7627 50 1 -3.8682 7.1568 9.6249 51 1 -0.8544 5.8944 10.1943 52 1 -2.3737 4.9704 10.1129 53 1 -1.0540 4.6156 8.9723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490360804.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:03 Heat of formation + Delta-G solvation = 18.570419 kcal Electronic energy + Delta-G solvation = -28924.858861 eV Core-core repulsion = 25025.450679 eV Total energy + Delta-G solvation = -3899.408182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.32360 -40.90526 -38.24187 -36.77133 -35.99666 -33.82696 -33.73449 -32.87158 -31.86277 -30.40669 -29.22336 -28.52775 -27.83557 -26.88865 -25.24282 -23.37610 -22.52392 -22.06692 -21.50276 -21.20567 -19.79486 -18.63860 -18.33624 -17.21837 -17.17677 -16.84713 -16.76496 -16.25078 -16.01074 -15.66544 -15.32266 -15.08834 -14.80921 -14.47077 -14.42188 -14.25970 -14.14744 -14.08236 -14.02717 -13.76524 -13.31719 -13.23287 -13.20140 -13.12049 -12.99118 -12.78249 -12.73085 -12.65772 -12.55890 -12.38349 -12.30745 -12.22968 -12.13604 -11.92901 -11.46427 -11.36954 -11.25441 -10.97438 -10.50946 -10.12358 -10.01578 -9.41915 -8.55192 -7.81631 -5.45627 0.91521 1.39934 1.42828 1.47003 1.52866 1.55953 1.86117 2.20706 2.50155 3.23354 3.35930 3.54690 3.66613 3.71692 3.79985 3.95009 4.05294 4.15755 4.18232 4.32475 4.44178 4.44958 4.47342 4.54575 4.54826 4.67753 4.70062 4.72203 4.73960 4.77925 4.84113 4.85914 4.88731 4.97574 4.99637 5.03879 5.05366 5.10750 5.14226 5.16328 5.33339 5.36887 5.42107 5.46474 5.60187 5.69609 5.83198 5.84448 6.13627 6.47676 6.47940 6.83703 7.14820 7.18767 7.88638 8.40679 9.12918 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.002042 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.479011 B =13710.258356 C =14147.989385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.261 4.261 5 H 0.055 0.945 6 C -0.037 4.037 7 N -0.918 5.918 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.291 1.291 11 H -0.292 1.292 12 C 0.150 3.850 13 C -0.124 4.124 14 C 0.134 3.866 15 N -0.715 5.715 16 C 0.518 3.482 17 O -0.573 6.573 18 C -0.137 4.137 19 C 0.180 3.820 20 H 0.117 0.883 21 C -0.156 4.156 22 N -0.373 5.373 23 N -0.331 5.331 24 C 0.058 3.942 25 C -0.069 4.069 26 C -0.286 4.286 27 C 0.079 3.921 28 C -0.094 4.094 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.250 0.750 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.413 0.587 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.066 0.934 50 H 0.165 0.835 51 H 0.089 0.911 52 H 0.105 0.895 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 6.306 20.943 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.072 0.928 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.024 3.976 13 C -0.164 4.164 14 C 0.009 3.991 15 N -0.366 5.366 16 C 0.304 3.696 17 O -0.453 6.453 18 C -0.177 4.177 19 C 0.078 3.922 20 H 0.135 0.865 21 C -0.214 4.214 22 N -0.156 5.156 23 N -0.154 5.154 24 C -0.108 4.108 25 C -0.128 4.128 26 C -0.314 4.314 27 C -0.048 4.048 28 C -0.152 4.152 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.250 0.750 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.114 0.886 49 H 0.085 0.915 50 H 0.183 0.817 51 H 0.108 0.892 52 H 0.123 0.877 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.941 6.579 20.130 26.507 hybrid contribution -0.135 0.555 -0.492 0.754 sum -16.076 7.134 19.638 26.363 Atomic orbital electron populations 1.22169 0.97274 1.00772 1.00806 1.21002 0.93826 0.85697 0.98648 1.43997 1.76440 1.09578 1.02292 1.19197 1.04004 1.21113 0.94844 0.92785 1.25837 0.94076 1.03354 1.00137 1.70132 1.03799 1.38057 1.44174 0.85456 0.77731 0.79631 0.79115 1.19118 1.21743 1.21912 1.20702 0.95292 0.96119 0.85536 1.22175 1.00667 0.99527 0.94044 1.21147 0.87430 0.95591 0.94895 1.46002 1.14409 1.52905 1.23295 1.20648 0.89947 0.78288 0.80697 1.90680 1.31728 1.62345 1.60566 1.21860 0.96569 1.01373 0.97916 1.20922 0.81316 0.95428 0.94580 0.86537 1.22123 0.99082 0.97788 1.02403 1.48790 1.21731 1.31410 1.13628 1.77239 1.05834 1.09036 1.23297 1.22910 0.96308 0.98724 0.92887 1.20256 0.93185 0.95416 1.03928 1.21430 1.02582 1.04746 1.02688 1.21729 0.95523 0.99344 0.88245 1.20609 1.02668 0.95423 0.96529 0.91650 0.92993 0.94589 0.95318 0.93617 0.94026 0.92291 0.95290 0.91155 0.93134 0.93717 0.91766 0.75040 0.87429 0.86763 0.92113 0.90030 0.92573 0.89672 0.88644 0.91451 0.81713 0.89198 0.87669 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 10.21 71.98 0.73 -4.21 16 2 C 0.13 5.39 6.44 86.38 0.56 5.95 16 3 N -0.60 -28.86 2.43 -701.99 -1.71 -30.57 16 4 C -0.26 -13.95 9.45 84.03 0.79 -13.16 16 5 H 0.05 2.90 7.92 -2.91 -0.02 2.88 16 6 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 7 N -0.92 -53.30 11.47 21.65 0.25 -53.05 16 8 Si 0.95 44.28 29.60 68.60 2.03 46.31 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 C 0.15 6.72 5.33 86.38 0.46 7.18 16 13 C -0.12 -4.36 5.65 30.60 0.17 -4.18 16 14 C 0.13 4.24 5.67 86.38 0.49 4.73 16 15 N -0.71 -17.98 5.56 -463.04 -2.57 -20.55 16 16 C 0.52 13.21 7.55 87.66 0.66 13.87 16 17 O -0.57 -18.43 13.96 -3.03 -0.04 -18.47 16 18 C -0.14 -2.70 5.43 29.85 0.16 -2.54 16 19 C 0.18 3.72 2.76 44.99 0.12 3.85 16 20 H 0.12 2.24 6.49 -2.39 -0.02 2.22 16 21 C -0.16 -3.61 9.19 71.98 0.66 -2.95 16 22 N -0.37 -8.00 3.28 -314.32 -1.03 -9.03 16 23 N -0.33 -8.08 12.43 -47.39 -0.59 -8.67 16 24 C 0.06 1.15 7.22 43.10 0.31 1.46 16 25 C -0.07 -0.89 10.45 71.23 0.74 -0.15 16 26 C -0.29 -4.97 10.65 21.99 0.23 -4.73 16 27 C 0.08 1.40 6.93 41.40 0.29 1.69 16 28 C -0.09 -1.00 9.95 71.23 0.71 -0.29 16 29 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.05 1.60 6.64 -2.39 -0.02 1.59 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.05 1.71 7.83 -2.38 -0.02 1.69 16 34 H 0.25 14.12 8.31 -92.72 -0.77 13.35 16 35 H 0.06 3.11 5.52 -2.38 -0.01 3.10 16 36 H 0.03 1.24 7.86 -2.38 -0.02 1.22 16 37 H 0.07 2.21 6.64 -2.39 -0.02 2.20 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.41 8.27 8.47 -92.71 -0.79 7.48 16 42 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 45 H 0.08 2.15 5.95 -2.39 -0.01 2.14 16 46 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 51 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.07 0.77 7.10 -2.38 -0.02 0.75 16 Total: -1.00 -68.98 426.75 3.96 -65.03 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.10 Total: 24.07 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 7.52 Total: 4.93 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -5.65 Total: -121.86 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.04 Total: -18.47 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -68.98 3.96 -65.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490360804.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.596 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds