Wall clock time and date at job start Sat Apr 11 2020 04:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47323 * 2 1 4 4 C 1.36935 * 119.99664 * 275.30743 * 3 2 1 5 5 H 1.07992 * 120.00376 * 37.57866 * 4 3 2 6 6 C 1.38817 * 119.99937 * 217.57519 * 4 3 2 7 7 N 1.31624 * 119.99578 * 21.43145 * 6 4 3 8 8 Si 1.86798 * 120.00348 * 201.42570 * 6 4 3 9 9 H 1.48501 * 109.46964 * 60.00261 * 8 6 4 10 10 H 1.48499 * 109.47268 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46828 * 300.00085 * 8 6 4 12 12 C 1.46500 * 120.00052 * 95.30953 * 3 2 1 13 13 C 1.53002 * 109.46695 * 269.99829 * 12 3 2 14 14 N 1.46503 * 109.47057 * 179.97438 * 13 12 3 15 15 C 1.34773 * 120.00537 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99484 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00319 * 179.97438 * 15 14 13 18 18 C 1.50706 * 109.46961 * 179.97438 * 17 15 14 19 19 C 1.39872 * 126.03477 * 90.02731 * 18 17 15 20 20 C 1.50697 * 125.90227 * 359.95825 * 19 18 17 21 21 N 1.30842 * 108.19830 * 179.97438 * 19 18 17 22 22 N 1.40083 * 108.20866 * 359.97438 * 21 19 18 23 23 C 1.46496 * 126.03802 * 179.97438 * 22 21 19 24 24 C 1.53001 * 109.47159 * 300.02401 * 23 22 21 25 25 C 1.52997 * 109.47232 * 60.02931 * 23 22 21 26 26 C 1.34951 * 107.92150 * 359.76229 * 22 21 19 27 27 C 1.50701 * 126.12789 * 180.23829 * 26 22 21 28 28 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47227 * 300.00380 * 1 2 3 30 30 H 1.09001 * 109.47013 * 60.00054 * 1 2 3 31 31 H 1.09000 * 109.47615 * 239.99499 * 2 1 3 32 32 H 1.09001 * 109.47013 * 119.99945 * 2 1 3 33 33 H 0.97005 * 120.00094 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47011 * 149.99934 * 12 3 2 35 35 H 1.09003 * 109.47301 * 29.99833 * 12 3 2 36 36 H 1.08999 * 109.47305 * 60.00286 * 13 12 3 37 37 H 1.08997 * 109.47371 * 299.99585 * 13 12 3 38 38 H 0.97004 * 119.99673 * 0.02562 * 14 13 12 39 39 H 1.09000 * 109.46984 * 60.01025 * 17 15 14 40 40 H 1.08994 * 109.47656 * 300.00414 * 17 15 14 41 41 H 1.08999 * 109.47036 * 89.99507 * 20 19 18 42 42 H 1.08996 * 109.47247 * 209.99997 * 20 19 18 43 43 H 1.08997 * 109.46954 * 329.99817 * 20 19 18 44 44 H 1.09003 * 109.47158 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47146 * 180.02562 * 24 23 22 46 46 H 1.08991 * 109.47489 * 300.00303 * 24 23 22 47 47 H 1.09003 * 109.46461 * 60.00338 * 24 23 22 48 48 H 1.08995 * 109.47177 * 59.99995 * 25 23 22 49 49 H 1.09002 * 109.47234 * 179.97438 * 25 23 22 50 50 H 1.09001 * 109.46787 * 299.99910 * 25 23 22 51 51 H 1.08999 * 109.47351 * 270.20215 * 27 26 22 52 52 H 1.09001 * 109.47065 * 30.19722 * 27 26 22 53 53 H 1.09000 * 109.47330 * 150.19661 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0632 -1.1808 5 1 1.4106 1.9277 -1.9627 6 6 3.2112 2.9288 -1.3729 7 7 4.3027 2.7979 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9630 5.1785 -2.3346 10 1 4.3625 5.0605 -2.6669 11 1 2.8847 3.6723 -3.9967 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7383 1.8364 14 7 1.4972 3.3893 3.1001 15 6 0.5649 4.0768 3.7889 16 8 -0.5680 4.1561 3.3629 17 6 0.9296 4.7459 5.0890 18 6 -0.2823 5.4421 5.6529 19 6 -1.2224 4.8815 6.5236 20 6 -1.2000 3.4738 7.0611 21 7 -2.1250 5.7904 6.7907 22 7 -1.7869 6.9599 6.0977 23 6 -2.5334 8.2202 6.1182 24 6 -3.9517 7.9814 5.5964 25 6 -2.5999 8.7503 7.5519 26 6 -0.6494 6.7219 5.4117 27 6 0.0793 7.7043 4.5312 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0490 3.4030 -0.7829 34 1 3.1617 2.7640 1.0859 35 1 2.7254 1.2833 1.9722 36 1 0.3540 2.0069 2.0138 37 1 0.7903 3.4877 1.1276 38 1 2.4033 3.3261 3.4405 39 1 1.7187 5.4769 4.9125 40 1 1.2808 3.9960 5.7977 41 1 -0.6380 3.4503 7.9948 42 1 -2.2208 3.1379 7.2428 43 1 -0.7247 2.8150 6.3344 44 1 -2.0310 8.9504 5.4838 45 1 -4.5070 8.9192 5.6112 46 1 -3.9043 7.6037 4.5751 47 1 -4.4540 7.2512 6.2309 48 1 -1.5895 8.9205 7.9235 49 1 -3.1549 9.6883 7.5670 50 1 -3.1022 8.0201 8.1863 51 1 -0.3002 7.6298 3.5122 52 1 -0.0805 8.7155 4.9054 53 1 1.1455 7.4781 4.5393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493043454.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:08 Heat of formation + Delta-G solvation = 17.711245 kcal Electronic energy + Delta-G solvation = -29823.133865 eV Core-core repulsion = 25923.688427 eV Total energy + Delta-G solvation = -3899.445439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.41657 -40.39611 -38.07019 -36.86457 -35.48305 -34.00349 -33.81978 -33.15393 -31.38271 -30.26898 -29.11927 -28.26385 -28.23609 -26.93330 -25.91771 -23.49026 -22.74084 -22.11752 -21.63964 -20.38980 -19.91981 -18.68587 -17.79916 -17.60492 -17.01748 -16.76414 -16.37264 -16.21783 -15.71627 -15.57366 -15.35373 -14.97537 -14.63667 -14.50549 -14.30371 -14.16358 -14.13579 -14.05621 -13.99698 -13.73296 -13.34961 -13.32141 -13.23919 -13.05215 -13.00070 -12.94814 -12.75522 -12.61649 -12.49001 -12.37531 -12.28743 -12.26554 -12.12992 -12.00605 -11.65492 -11.48870 -11.31614 -10.83012 -10.52668 -9.93560 -9.91424 -9.18151 -8.57739 -7.84426 -5.47138 0.93411 1.45049 1.47954 1.54542 1.58705 1.71035 1.81943 2.44166 2.58327 3.23282 3.43059 3.71426 3.78989 3.90556 3.91679 3.99565 4.08395 4.17215 4.27663 4.33364 4.39177 4.48616 4.53059 4.55144 4.60108 4.62340 4.63376 4.74222 4.75358 4.77756 4.80105 4.82609 4.83800 4.85209 4.96195 5.05796 5.07316 5.08710 5.16315 5.22431 5.27138 5.28961 5.34565 5.53260 5.56686 5.68327 5.78748 5.82043 6.22670 6.46732 6.77450 6.83995 7.16602 7.45643 7.84537 8.36826 9.11373 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002644 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.501112 B =10587.582599 C =11511.749043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.272 4.272 5 H 0.049 0.951 6 C -0.027 4.027 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.287 1.287 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.146 3.854 13 C 0.123 3.877 14 N -0.716 5.716 15 C 0.506 3.494 16 O -0.589 6.589 17 C -0.049 4.049 18 C -0.238 4.238 19 C 0.070 3.930 20 C -0.069 4.069 21 N -0.326 5.326 22 N -0.369 5.369 23 C 0.145 3.855 24 C -0.155 4.155 25 C -0.150 4.150 26 C 0.088 3.912 27 C -0.093 4.093 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.022 0.978 38 H 0.413 0.587 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.041 0.959 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.101 0.899 50 H 0.051 0.949 51 H 0.069 0.931 52 H 0.094 0.906 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 10.503 18.466 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.403 4.403 5 H 0.066 0.934 6 C -0.225 4.225 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.213 1.213 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.019 3.981 13 C -0.003 4.003 14 N -0.369 5.369 15 C 0.294 3.706 16 O -0.469 6.469 17 C -0.090 4.090 18 C -0.250 4.250 19 C -0.096 4.096 20 C -0.128 4.128 21 N -0.149 5.149 22 N -0.152 5.152 23 C 0.044 3.956 24 C -0.213 4.213 25 C -0.208 4.208 26 C -0.040 4.040 27 C -0.151 4.151 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.249 0.751 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.139 0.861 45 H 0.122 0.878 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.071 0.929 51 H 0.087 0.913 52 H 0.113 0.887 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.954 11.017 18.771 23.535 hybrid contribution 0.809 0.287 -1.394 1.637 sum -8.145 11.303 17.377 22.273 Atomic orbital electron populations 1.22220 0.98199 1.00781 1.00230 1.20998 0.93005 0.85549 0.99283 1.43858 1.76402 1.09613 1.02104 1.19100 1.04391 1.21987 0.94779 0.93354 1.25740 0.93974 1.02764 1.00041 1.70076 1.03457 1.37906 1.43766 0.85623 0.76618 0.80016 0.79875 1.21328 1.21099 1.20213 1.20937 0.94405 0.96755 0.86051 1.21808 0.99612 0.95050 0.83870 1.46005 1.14222 1.53405 1.23252 1.21445 0.84451 0.77973 0.86724 1.90665 1.22777 1.62247 1.71198 1.19934 0.95996 1.00650 0.92374 1.19289 1.02968 0.94265 1.08473 1.22562 0.92672 0.97139 0.97214 1.20201 1.03316 0.87645 1.01600 1.77101 1.23890 0.92948 1.20963 1.48808 1.19230 1.10831 1.36291 1.21638 0.93018 0.80747 1.00175 1.22086 0.95079 1.03772 1.00366 1.22060 1.02907 1.02194 0.93624 1.21268 0.89441 0.96972 0.96326 1.20571 1.00674 0.96864 0.97009 0.91243 0.94222 0.94845 0.94497 0.92911 0.93600 0.90717 0.93632 0.94043 0.95903 0.75122 0.86126 0.85733 0.88395 0.91399 0.90813 0.86124 0.87774 0.93964 0.92973 0.92293 0.88064 0.92942 0.91258 0.88744 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 10.21 71.98 0.73 -4.98 16 2 C 0.14 5.69 6.44 86.38 0.56 6.24 16 3 N -0.60 -29.26 2.43 -702.01 -1.71 -30.97 16 4 C -0.27 -14.82 9.45 84.03 0.79 -14.03 16 5 H 0.05 2.69 7.92 -2.91 -0.02 2.67 16 6 C -0.03 -1.46 4.95 84.86 0.42 -1.04 16 7 N -0.91 -50.44 11.47 21.65 0.25 -50.19 16 8 Si 0.95 44.07 29.60 68.60 2.03 46.10 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 C 0.15 6.43 5.45 86.38 0.47 6.90 16 13 C 0.12 5.08 6.00 86.38 0.52 5.60 16 14 N -0.72 -23.04 5.56 -463.06 -2.57 -25.62 16 15 C 0.51 16.49 7.82 87.66 0.69 17.18 16 16 O -0.59 -25.31 16.03 -3.06 -0.05 -25.36 16 17 C -0.05 -1.11 5.64 29.10 0.16 -0.95 16 18 C -0.24 -6.46 4.59 -20.14 -0.09 -6.55 16 19 C 0.07 1.98 7.22 43.10 0.31 2.29 16 20 C -0.07 -1.52 10.12 71.23 0.72 -0.80 16 21 N -0.33 -9.72 12.43 -47.38 -0.59 -10.31 16 22 N -0.37 -9.35 3.28 -314.31 -1.03 -10.38 16 23 C 0.14 2.52 3.64 44.99 0.16 2.68 16 24 C -0.16 -2.74 9.45 71.98 0.68 -2.06 16 25 C -0.15 -2.07 9.45 71.98 0.68 -1.39 16 26 C 0.09 2.23 6.93 41.40 0.29 2.52 16 27 C -0.09 -1.72 9.73 71.24 0.69 -1.02 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.49 6.64 -2.38 -0.02 1.47 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 32 H 0.05 1.98 7.83 -2.39 -0.02 1.96 16 33 H 0.25 13.62 8.31 -92.70 -0.77 12.85 16 34 H 0.08 3.71 5.52 -2.39 -0.01 3.70 16 35 H 0.05 1.83 7.86 -2.39 -0.02 1.81 16 36 H 0.04 1.77 6.64 -2.39 -0.02 1.76 16 37 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.41 10.53 8.47 -92.71 -0.79 9.74 16 39 H 0.12 2.08 7.13 -2.39 -0.02 2.07 16 40 H 0.12 2.12 7.92 -2.39 -0.02 2.10 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.62 7.92 -2.39 -0.02 1.61 16 44 H 0.12 1.53 6.68 -2.39 -0.02 1.51 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.09 1.18 7.11 -2.39 -0.02 1.16 16 53 H 0.10 1.53 7.14 -2.39 -0.02 1.51 16 Total: -1.00 -75.07 428.11 4.22 -70.85 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.10 Total: 25.29 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 7.79 Total: 10.59 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -5.65 Total: -127.46 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.07 4.22 -70.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493043454.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.556 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds