Wall clock time and date at job start Sat Apr 11 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46498 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00286 * 264.11640 * 4 3 2 6 6 H 1.08000 * 120.00246 * 188.01955 * 5 4 3 7 7 C 1.38815 * 119.99597 * 8.01360 * 5 4 3 8 8 N 1.31618 * 120.00098 * 25.65074 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 205.64543 * 7 5 4 10 10 H 1.48498 * 109.46911 * 84.99179 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99349 * 9 7 5 12 12 H 1.48496 * 109.47035 * 324.98931 * 9 7 5 13 13 C 1.46498 * 120.00059 * 84.12086 * 4 3 2 14 14 C 1.53007 * 109.46723 * 270.00130 * 13 4 3 15 15 N 1.46507 * 109.46790 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99769 * 180.27593 * 15 14 13 17 17 O 1.21577 * 120.00033 * 359.71498 * 16 15 14 18 18 C 1.47709 * 120.00030 * 179.72632 * 16 15 14 19 19 C 1.41502 * 126.51950 * 180.02562 * 18 16 15 20 20 C 1.35362 * 105.50383 * 179.97438 * 19 18 16 21 21 C 1.50700 * 126.38533 * 180.02562 * 20 19 18 22 22 N 1.35032 * 107.22704 * 359.97438 * 20 19 18 23 23 C 1.46506 * 124.88350 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.47076 * 359.97438 * 23 22 20 25 25 C 1.52997 * 109.47122 * 240.00402 * 23 22 20 26 26 C 1.52995 * 109.47319 * 120.00020 * 23 22 20 27 27 C 1.52998 * 109.47276 * 185.00016 * 26 23 22 28 28 N 1.28462 * 110.23441 * 359.73185 * 22 20 19 29 29 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47347 * 300.00300 * 1 2 3 31 31 H 1.09008 * 109.46665 * 59.99905 * 1 2 3 32 32 H 1.09000 * 109.47118 * 240.00511 * 2 1 3 33 33 H 1.08999 * 109.47229 * 120.00035 * 2 1 3 34 34 H 1.08999 * 109.46709 * 59.99769 * 3 2 1 35 35 H 1.08999 * 109.47187 * 300.00060 * 3 2 1 36 36 H 0.96997 * 119.99765 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47625 * 149.99840 * 13 4 3 38 38 H 1.09003 * 109.47124 * 29.99352 * 13 4 3 39 39 H 1.08989 * 109.47627 * 59.99935 * 14 13 4 40 40 H 1.09000 * 109.47005 * 299.99068 * 14 13 4 41 41 H 0.96997 * 119.99821 * 359.97438 * 15 14 13 42 42 H 1.08003 * 127.24663 * 359.97438 * 19 18 16 43 43 H 1.08997 * 109.47621 * 89.97313 * 21 20 19 44 44 H 1.09005 * 109.47233 * 209.97352 * 21 20 19 45 45 H 1.09005 * 109.47230 * 329.96630 * 21 20 19 46 46 H 1.09007 * 109.47507 * 59.99508 * 25 23 22 47 47 H 1.09004 * 109.47589 * 179.97438 * 25 23 22 48 48 H 1.09000 * 109.47054 * 299.99991 * 25 23 22 49 49 H 1.08999 * 109.47009 * 305.00119 * 26 23 22 50 50 H 1.09002 * 109.46644 * 64.99968 * 26 23 22 51 51 H 1.08999 * 109.46966 * 180.02562 * 27 26 23 52 52 H 1.09006 * 109.46968 * 300.00303 * 27 26 23 53 53 H 1.09002 * 109.47236 * 59.99818 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.5643 1.1805 6 1 5.2613 1.6946 1.1721 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2164 2.3619 3.8958 10 1 3.8295 3.7956 3.8914 11 1 3.6884 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3124 -1.2611 14 6 4.4931 -0.1679 -1.5523 15 7 5.2267 -0.2980 -2.8138 16 6 5.5590 -1.5192 -3.2771 17 8 5.2545 -2.5125 -2.6457 18 6 6.2933 -1.6508 -4.5519 19 6 6.7089 -2.8571 -5.1637 20 6 7.3379 -2.4867 -6.3037 21 6 7.9662 -3.4076 -7.3177 22 7 7.2964 -1.1384 -6.3634 23 6 7.8673 -0.3295 -7.4433 24 1 8.3269 -0.9843 -8.1836 25 6 8.9269 0.6130 -6.8691 26 6 6.7594 0.4917 -8.1058 27 6 7.3310 1.2406 -9.3113 28 7 6.6800 -0.6671 -5.3396 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 1.8766 0.8548 3.3124 37 1 5.1903 1.8369 -1.1838 38 1 3.6492 1.7455 -2.0697 39 1 3.5408 -0.6923 -1.6296 40 1 5.0819 -0.6010 -0.7437 41 1 5.4694 0.4945 -3.3176 42 1 6.5563 -3.8619 -4.7981 43 1 7.2257 -3.6791 -8.0701 44 1 8.8037 -2.9017 -7.7983 45 1 8.3239 -4.3081 -6.8184 46 1 9.7162 0.0280 -6.3970 47 1 9.3520 1.2146 -7.6726 48 1 8.4677 1.2678 -6.1285 49 1 5.9619 -0.1739 -8.4362 50 1 6.3603 1.2088 -7.3884 51 1 6.5417 1.8259 -9.7830 52 1 8.1285 1.9061 -8.9808 53 1 7.7301 0.5234 -10.0287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493300219.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:11 Heat of formation + Delta-G solvation = 31.051976 kcal Electronic energy + Delta-G solvation = -29463.758614 eV Core-core repulsion = 25564.891673 eV Total energy + Delta-G solvation = -3898.866941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.76409 -40.50370 -38.35084 -37.41774 -35.93239 -33.82768 -33.74378 -33.16003 -32.62694 -30.22902 -29.49194 -27.88724 -27.36802 -26.40333 -25.21913 -24.09145 -22.46592 -22.10974 -21.96461 -21.59162 -20.24466 -18.76108 -18.28707 -17.60237 -17.16463 -16.97711 -16.63177 -16.34662 -16.07819 -15.61714 -15.41016 -15.14506 -15.00449 -14.68690 -14.59595 -14.30706 -14.09877 -14.02420 -13.86481 -13.55756 -13.42521 -13.27649 -13.07938 -13.05464 -12.81303 -12.72824 -12.65653 -12.54453 -12.40301 -12.18934 -12.01010 -11.83002 -11.82635 -11.71097 -11.62992 -11.58061 -11.31176 -11.09160 -10.34167 -10.26001 -9.93804 -9.88626 -8.86718 -7.79431 -5.12259 0.51440 1.10552 1.45342 1.49630 1.52094 1.58702 2.15128 2.35207 2.57522 3.23211 3.28204 3.64500 3.71015 3.76250 3.79808 4.00133 4.03564 4.19113 4.27908 4.37200 4.42095 4.48229 4.52802 4.60692 4.62348 4.63298 4.68481 4.74730 4.78232 4.84919 4.89588 4.95233 5.01282 5.03482 5.05670 5.09274 5.10767 5.11961 5.26053 5.26830 5.34711 5.41859 5.43986 5.44666 5.52266 5.65060 5.87180 5.92354 6.18969 6.36238 6.45954 6.92860 7.16838 7.22269 7.91256 8.31299 9.21622 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.002314 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.903956 B =12098.630700 C =12396.230842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.175 3.825 4 N -0.606 5.606 5 C -0.266 4.266 6 H 0.072 0.928 7 C -0.046 4.046 8 N -0.908 5.908 9 Si 0.956 3.044 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.278 1.278 13 C 0.148 3.852 14 C 0.112 3.888 15 N -0.700 5.700 16 C 0.594 3.406 17 O -0.582 6.582 18 C -0.042 4.042 19 C -0.208 4.208 20 C 0.022 3.978 21 C -0.082 4.082 22 N -0.267 5.267 23 C 0.137 3.863 24 H 0.142 0.858 25 C -0.162 4.162 26 C -0.130 4.130 27 C -0.146 4.146 28 N -0.263 5.263 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.247 0.753 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.033 0.967 41 H 0.414 0.586 42 H 0.157 0.843 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.054 0.946 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.062 0.938 52 H 0.070 0.930 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.612 -1.769 -28.918 31.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.327 5.327 5 C -0.396 4.396 6 H 0.089 0.911 7 C -0.242 4.242 8 N -0.554 5.554 9 Si 0.786 3.214 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.204 1.204 13 C 0.020 3.980 14 C -0.015 4.015 15 N -0.351 5.351 16 C 0.379 3.621 17 O -0.460 6.460 18 C -0.200 4.200 19 C -0.236 4.236 20 C -0.103 4.103 21 C -0.140 4.140 22 N -0.057 5.057 23 C 0.038 3.962 24 H 0.159 0.841 25 C -0.220 4.220 26 C -0.168 4.168 27 C -0.204 4.204 28 N -0.099 5.099 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.250 0.750 42 H 0.174 0.826 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.128 0.872 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.089 0.911 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.329 -1.190 -28.482 31.058 hybrid contribution 0.025 -0.521 1.565 1.649 sum 12.354 -1.711 -26.917 29.666 Atomic orbital electron populations 1.21524 0.96002 1.00391 1.00668 1.22032 0.95184 0.99599 0.99330 1.20835 0.81504 0.94731 0.97981 1.44422 1.02364 1.83846 1.02047 1.19490 0.92365 1.43066 0.84654 0.91059 1.25374 0.98393 1.00879 0.99569 1.70336 1.18140 1.41945 1.24986 0.85444 0.77809 0.78678 0.79472 1.21342 1.22646 1.20357 1.21032 0.96934 0.91448 0.88564 1.22247 0.94523 1.01229 0.83478 1.45816 1.56947 1.08075 1.24266 1.17396 0.78055 0.83317 0.83303 1.90756 1.56839 1.38768 1.59675 1.21659 1.08245 0.92609 0.97485 1.21686 1.06120 0.99053 0.96751 1.21952 1.03792 0.85056 0.99471 1.20550 1.00891 0.97055 0.95503 1.46117 1.38062 1.05265 1.16257 1.22164 0.94943 0.93659 0.85397 0.84088 1.22208 0.97442 0.99429 1.02907 1.21835 0.96971 0.99196 0.98793 1.21782 1.01770 1.00621 0.96202 1.73369 1.12170 1.26569 0.97833 0.93577 0.93829 0.92755 0.96107 0.92302 0.91875 0.95684 0.94378 0.92150 0.91329 0.93456 0.94848 0.74973 0.82564 0.88736 0.88720 0.88721 0.92199 0.87236 0.92699 0.92039 0.92062 0.91915 0.91087 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.91 71.98 0.71 -4.33 16 2 C -0.12 -5.77 5.60 30.60 0.17 -5.60 16 3 C 0.17 8.46 4.92 86.38 0.43 8.88 16 4 N -0.61 -30.19 2.54 -702.00 -1.78 -31.97 16 5 C -0.27 -14.61 9.70 84.03 0.81 -13.80 16 6 H 0.07 3.87 7.94 -2.91 -0.02 3.85 16 7 C -0.05 -2.57 4.89 84.86 0.41 -2.16 16 8 N -0.91 -51.90 8.62 21.65 0.19 -51.72 16 9 Si 0.96 45.42 29.62 68.60 2.03 47.45 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.15 6.02 5.82 86.38 0.50 6.52 16 14 C 0.11 4.73 5.88 86.38 0.51 5.24 16 15 N -0.70 -25.17 5.55 -466.08 -2.59 -27.76 16 16 C 0.59 23.08 7.82 86.75 0.68 23.76 16 17 O -0.58 -27.30 16.93 -3.96 -0.07 -27.36 16 18 C -0.04 -1.33 7.13 42.46 0.30 -1.02 16 19 C -0.21 -5.59 10.73 22.41 0.24 -5.35 16 20 C 0.02 0.41 6.92 41.40 0.29 0.70 16 21 C -0.08 -0.65 9.92 71.24 0.71 0.06 16 22 N -0.27 -5.13 3.04 -314.20 -0.96 -6.09 16 23 C 0.14 1.44 3.02 44.99 0.14 1.58 16 24 H 0.14 0.55 6.55 -2.39 -0.02 0.53 16 25 C -0.16 -1.62 9.12 71.98 0.66 -0.96 16 26 C -0.13 -1.38 5.57 30.59 0.17 -1.21 16 27 C -0.15 -0.76 9.67 71.98 0.70 -0.06 16 28 N -0.26 -6.97 11.33 -48.17 -0.55 -7.51 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.02 0.96 5.98 -2.39 -0.01 0.95 16 33 H 0.06 3.28 6.33 -2.39 -0.02 3.26 16 34 H 0.06 3.42 5.85 -2.39 -0.01 3.40 16 35 H 0.03 1.09 7.98 -2.39 -0.02 1.07 16 36 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 37 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 38 H 0.07 2.46 7.95 -2.39 -0.02 2.44 16 39 H 0.05 2.20 5.92 -2.39 -0.01 2.18 16 40 H 0.03 1.63 8.14 -2.39 -0.02 1.62 16 41 H 0.41 12.53 8.20 -92.71 -0.76 11.77 16 42 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.09 0.28 7.02 -2.38 -0.02 0.27 16 45 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.11 0.47 6.57 -2.39 -0.02 0.45 16 48 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 52 H 0.07 0.27 6.57 -2.38 -0.02 0.25 16 53 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -73.67 420.53 3.84 -69.84 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.13 Total: 22.88 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 7.42 Total: 12.24 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -5.68 Total: -125.05 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.07 Total: -27.36 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.67 3.84 -69.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493300219.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.888 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds