Wall clock time and date at job start Sat Apr 11 2020 04:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47429 * 2 1 4 4 N 1.28442 * 125.19251 * 85.78764 * 3 2 1 5 5 C 1.30866 * 110.92576 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.06891 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47380 * 265.02397 * 6 5 4 8 8 C 1.53002 * 109.47230 * 145.01857 * 6 5 4 9 9 C 1.39667 * 107.86017 * 0.26001 * 5 4 3 10 10 C 1.36601 * 125.18670 * 265.78997 * 3 2 1 11 11 C 1.47165 * 126.88446 * 359.97438 * 10 3 2 12 12 O 1.21628 * 120.00049 * 5.27986 * 11 10 3 13 13 N 1.34781 * 119.99918 * 185.28744 * 11 10 3 14 14 C 1.46502 * 119.99842 * 185.09446 * 13 11 10 15 15 H 1.08995 * 109.47198 * 34.99670 * 14 13 11 16 16 C 1.53007 * 109.46817 * 274.99773 * 14 13 11 17 17 C 1.52997 * 109.47095 * 154.99958 * 14 13 11 18 18 C 1.52999 * 109.46734 * 294.99906 * 17 14 13 19 19 C 1.53010 * 109.46823 * 180.02562 * 18 17 14 20 20 N 1.46497 * 109.46794 * 180.02562 * 19 18 17 21 21 C 1.36940 * 119.99888 * 180.02562 * 20 19 18 22 22 H 1.08004 * 119.99989 * 359.97438 * 21 20 19 23 23 C 1.38808 * 120.00270 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99842 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00332 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46853 * 89.99709 * 25 23 21 27 27 H 1.48490 * 109.47194 * 209.99710 * 25 23 21 28 28 H 1.48497 * 109.46837 * 330.00383 * 25 23 21 29 29 H 1.08993 * 109.47666 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46835 * 300.00537 * 1 2 3 31 31 H 1.09003 * 109.46966 * 60.00154 * 1 2 3 32 32 H 1.09002 * 109.46835 * 239.99463 * 2 1 3 33 33 H 1.09003 * 109.46966 * 119.99845 * 2 1 3 34 34 H 1.09009 * 109.46808 * 25.02050 * 6 5 4 35 35 H 1.09002 * 109.47306 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47182 * 59.99347 * 7 6 5 37 37 H 1.09004 * 109.46421 * 299.99771 * 7 6 5 38 38 H 1.08995 * 109.46802 * 180.02562 * 8 6 5 39 39 H 1.08995 * 109.47220 * 300.00191 * 8 6 5 40 40 H 1.09001 * 109.46461 * 60.00447 * 8 6 5 41 41 H 1.08003 * 127.31843 * 179.74604 * 9 5 4 42 42 H 0.97001 * 119.99932 * 5.09249 * 13 11 10 43 43 H 1.08992 * 109.47099 * 180.02562 * 16 14 13 44 44 H 1.09004 * 109.47094 * 299.99925 * 16 14 13 45 45 H 1.08995 * 109.47002 * 60.00013 * 16 14 13 46 46 H 1.09004 * 109.47434 * 54.99603 * 17 14 13 47 47 H 1.08998 * 109.47330 * 174.99485 * 17 14 13 48 48 H 1.08995 * 109.47289 * 299.99302 * 18 17 14 49 49 H 1.09002 * 109.47332 * 60.00189 * 18 17 14 50 50 H 1.08995 * 109.46841 * 299.99232 * 19 18 17 51 51 H 1.08992 * 109.46986 * 59.99976 * 19 18 17 52 52 H 0.97000 * 120.00727 * 359.97438 * 20 19 18 53 53 H 0.97006 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1925 2.1048 1.0468 5 6 2.6372 3.2928 0.7251 6 6 2.9566 4.4103 1.6844 7 6 1.7467 5.3386 1.8072 8 6 4.1568 5.2030 1.1625 9 6 2.7569 3.3433 -0.6655 10 6 2.3581 2.0960 -1.1134 11 6 2.3045 1.6344 -2.5098 12 8 1.8364 0.5429 -2.7719 13 7 2.7742 2.4213 -3.4981 14 6 2.6201 2.0118 -4.8963 15 1 1.6733 1.4858 -5.0185 16 6 3.7729 1.0843 -5.2860 17 6 2.6355 3.2499 -5.7949 18 6 1.4122 4.1167 -5.4898 19 6 1.4272 5.3546 -6.3890 20 7 0.2562 6.1848 -6.0964 21 6 0.0561 7.3527 -6.7829 22 1 0.7618 7.6619 -7.5398 23 6 -1.0537 8.1392 -6.5061 24 7 -1.9139 7.7622 -5.5840 25 14 -1.3263 9.7326 -7.4421 26 1 -2.1325 9.4600 -8.6591 27 1 -2.0487 10.6982 -6.5758 28 1 -0.0143 10.3060 -7.8358 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1947 3.9924 2.6626 35 1 1.9776 6.1467 2.5014 36 1 0.8917 4.7739 2.1789 37 1 1.5086 5.7564 0.8289 38 1 4.3881 6.0109 1.8566 39 1 5.0188 4.5416 1.0751 40 1 3.9186 5.6207 0.1844 41 1 3.0923 4.1775 -1.2639 42 1 3.2143 3.2587 -3.2837 43 1 3.6585 0.7800 -6.3264 44 1 4.7197 1.6103 -5.1638 45 1 3.7619 0.2023 -4.6458 46 1 3.5431 3.8237 -5.6076 47 1 2.6103 2.9408 -6.8399 48 1 0.5045 3.5431 -5.6772 49 1 1.4374 4.4259 -4.4448 50 1 2.3348 5.9284 -6.2020 51 1 1.4017 5.0451 -7.4337 52 1 -0.3778 5.9071 -5.4169 53 1 -2.6893 8.3120 -5.3903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506928004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:26 Heat of formation + Delta-G solvation = -0.566142 kcal Electronic energy + Delta-G solvation = -29564.573655 eV Core-core repulsion = 25664.335650 eV Total energy + Delta-G solvation = -3900.238006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.64359 -40.72157 -38.01833 -37.06073 -36.47853 -34.74912 -34.17086 -33.04136 -31.60441 -30.57305 -30.23647 -27.96515 -27.22836 -25.37955 -24.94180 -24.46819 -23.27853 -22.34124 -21.77678 -21.41041 -20.26923 -19.11829 -18.80675 -17.63506 -17.12100 -16.89743 -16.62537 -15.99643 -15.86563 -15.61776 -15.57943 -15.32955 -15.17819 -15.04886 -14.95214 -14.42160 -14.23278 -14.07429 -13.84542 -13.44434 -13.41064 -13.19815 -13.09387 -12.99794 -12.89410 -12.76990 -12.43269 -12.38366 -12.25402 -12.22300 -12.12316 -12.06228 -12.01003 -11.84981 -11.71326 -11.49883 -11.46375 -11.11627 -10.92241 -10.34850 -10.01156 -9.88838 -8.99430 -7.94829 -5.24090 0.18471 1.33743 1.47672 1.49670 1.52290 1.58250 2.09689 2.18159 2.56612 3.35704 3.39103 3.48082 3.66583 3.83302 3.96532 3.97552 4.01626 4.11679 4.24365 4.25841 4.29591 4.31625 4.40470 4.41242 4.52406 4.59902 4.62063 4.68898 4.70857 4.79923 4.84473 4.87647 4.88261 4.92471 5.00577 5.03690 5.06421 5.08093 5.13143 5.19564 5.33496 5.35753 5.41474 5.44502 5.46301 5.50656 5.51763 5.55865 5.75026 6.27566 6.38064 6.99860 7.08729 7.33185 8.10837 8.32367 9.28908 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.002852 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.119491 B = 9814.029618 C =11491.181959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.110 3.890 3 N -0.262 5.262 4 N -0.293 5.293 5 C 0.024 3.976 6 C -0.007 4.007 7 C -0.141 4.141 8 C -0.140 4.140 9 C -0.178 4.178 10 C -0.054 4.054 11 C 0.592 3.408 12 O -0.568 6.568 13 N -0.695 5.695 14 C 0.148 3.852 15 H 0.069 0.931 16 C -0.155 4.155 17 C -0.110 4.110 18 C -0.114 4.114 19 C 0.150 3.850 20 N -0.751 5.751 21 C -0.246 4.246 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.974 3.026 26 H -0.288 1.288 27 H -0.295 1.295 28 H -0.266 1.266 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.178 0.822 42 H 0.413 0.587 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.045 0.955 49 H 0.057 0.943 50 H 0.027 0.973 51 H 0.020 0.980 52 H 0.371 0.629 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.583 -14.394 12.635 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 N -0.050 5.050 4 N -0.126 5.126 5 C -0.132 4.132 6 C -0.028 4.028 7 C -0.199 4.199 8 C -0.198 4.198 9 C -0.207 4.207 10 C -0.183 4.183 11 C 0.377 3.623 12 O -0.448 6.448 13 N -0.347 5.347 14 C 0.044 3.956 15 H 0.088 0.912 16 C -0.213 4.213 17 C -0.148 4.148 18 C -0.152 4.152 19 C 0.024 3.976 20 N -0.393 5.393 21 C -0.378 4.378 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.215 1.215 27 H -0.222 1.222 28 H -0.191 1.191 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.195 0.805 42 H 0.250 0.750 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.045 0.955 51 H 0.038 0.962 52 H 0.202 0.798 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.948 -15.878 13.176 25.479 hybrid contribution -0.695 1.508 -0.726 1.812 sum 14.253 -14.371 12.450 23.762 Atomic orbital electron populations 1.22023 0.93164 1.04526 1.01676 1.22320 0.96488 0.75903 1.06225 1.45987 1.44462 1.12829 1.01672 1.73069 1.19766 1.05584 1.14220 1.22398 1.03045 0.93474 0.94276 1.19516 0.96656 0.90477 0.96104 1.21814 0.96685 0.99135 1.02294 1.21815 0.96016 0.99887 1.02081 1.22371 1.06489 0.96638 0.95224 1.21529 1.11930 0.94874 0.89924 1.16999 0.77606 0.84151 0.83496 1.90744 1.47914 1.21814 1.84302 1.45760 1.58828 1.24342 1.05758 1.21066 0.99857 0.95885 0.78814 0.91230 1.22102 0.97979 0.98822 1.02376 1.21773 0.98122 0.94458 1.00427 1.21608 0.98633 0.95572 0.99400 1.20859 0.89140 0.90926 0.96673 1.42662 1.27046 1.23859 1.45766 1.19676 1.05636 0.98158 1.14311 0.90463 1.25606 0.97745 1.02880 1.00756 1.69833 1.15012 1.40675 1.36726 0.85125 0.77957 0.79201 0.77409 1.21480 1.22195 1.19110 0.87746 0.92288 0.94011 0.87094 0.86741 0.89620 0.90128 0.93876 0.93043 0.90449 0.92326 0.91994 0.80464 0.74978 0.90004 0.90927 0.93563 0.89160 0.88696 0.93584 0.92459 0.95529 0.96198 0.79768 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.24 71.98 0.74 -2.32 16 2 C 0.11 2.23 6.58 86.38 0.57 2.80 16 3 N -0.26 -6.60 3.35 -334.68 -1.12 -7.72 16 4 N -0.29 -7.62 11.90 -47.50 -0.57 -8.19 16 5 C 0.02 0.56 6.12 43.05 0.26 0.82 16 6 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 7 C -0.14 -2.57 9.18 71.98 0.66 -1.91 16 8 C -0.14 -1.95 8.79 71.98 0.63 -1.32 16 9 C -0.18 -4.01 9.65 22.65 0.22 -3.79 16 10 C -0.05 -1.37 6.96 40.79 0.28 -1.09 16 11 C 0.59 15.25 7.75 86.59 0.67 15.92 16 12 O -0.57 -17.13 14.34 -4.12 -0.06 -17.18 16 13 N -0.70 -14.47 4.51 -446.05 -2.01 -16.48 16 14 C 0.15 2.99 2.54 44.99 0.11 3.11 16 15 H 0.07 1.74 7.65 -2.39 -0.02 1.72 16 16 C -0.15 -2.56 9.48 71.98 0.68 -1.87 16 17 C -0.11 -2.19 4.75 30.59 0.15 -2.04 16 18 C -0.11 -3.40 5.22 30.60 0.16 -3.24 16 19 C 0.15 5.74 6.26 86.38 0.54 6.28 16 20 N -0.75 -38.57 5.60 -343.45 -1.92 -40.49 16 21 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 24 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 25 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 2.38 6.19 -2.39 -0.01 2.37 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.87 7.37 -2.39 -0.02 0.85 16 41 H 0.18 3.11 7.09 -2.91 -0.02 3.09 16 42 H 0.41 6.99 7.68 -92.71 -0.71 6.28 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.05 0.91 8.09 -2.39 -0.02 0.89 16 46 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 50 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.37 20.52 7.67 -92.71 -0.71 19.81 16 53 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -72.93 430.07 3.04 -69.89 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.54 Total: 37.90 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 6.95 Total: -5.88 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -5.34 Total: -132.93 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.06 Total: -17.18 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.93 3.04 -69.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506928004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.326 kcal (2) G-P(sol) polarization free energy of solvation -72.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds