Wall clock time and date at job start Sat Apr 11 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00077 * 2 1 4 4 C 1.50702 * 120.00058 * 180.02562 * 2 1 3 5 5 N 1.46496 * 109.47314 * 94.53964 * 4 2 1 6 6 C 1.36747 * 127.13417 * 274.59272 * 5 4 2 7 7 C 1.50698 * 126.34710 * 359.94467 * 6 5 4 8 8 H 1.09000 * 109.47486 * 6.63345 * 7 6 5 9 9 C 1.53004 * 109.47119 * 126.63226 * 7 6 5 10 10 C 1.53001 * 109.46972 * 246.63432 * 7 6 5 11 11 C 1.52996 * 109.47091 * 298.04582 * 10 7 6 12 12 C 1.52998 * 109.47092 * 58.04705 * 10 7 6 13 13 O 1.42895 * 109.46872 * 178.04752 * 10 7 6 14 14 N 1.30294 * 107.30473 * 179.97438 * 6 5 4 15 15 N 1.28534 * 110.05222 * 359.97438 * 14 6 5 16 16 C 1.31214 * 109.86088 * 359.74844 * 15 14 6 17 17 N 1.38577 * 126.47548 * 180.25977 * 16 15 14 18 18 C 1.46897 * 111.00044 * 250.03154 * 17 16 15 19 19 C 1.46905 * 110.99873 * 13.97941 * 17 16 15 20 20 H 1.09007 * 109.46836 * 54.99952 * 19 17 16 21 21 C 1.53001 * 109.47135 * 295.00233 * 19 17 16 22 22 C 1.50698 * 109.47187 * 175.00098 * 19 17 16 23 23 H 1.08000 * 120.00196 * 0.02562 * 22 19 17 24 24 C 1.37876 * 119.99767 * 180.02562 * 22 19 17 25 25 N 1.31511 * 120.00468 * 0.02562 * 24 22 19 26 26 Si 1.86813 * 119.99705 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.46980 * 59.99828 * 26 24 22 28 28 H 1.48499 * 109.46644 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46884 * 299.99713 * 26 24 22 30 30 H 1.08004 * 120.00015 * 185.30595 * 1 2 3 31 31 H 1.08000 * 120.00242 * 5.30327 * 1 2 3 32 32 H 1.08999 * 109.46901 * 174.97820 * 3 2 1 33 33 H 1.09007 * 109.47085 * 294.97622 * 3 2 1 34 34 H 1.08997 * 109.46880 * 54.97504 * 3 2 1 35 35 H 1.09000 * 109.46827 * 214.54020 * 4 2 1 36 36 H 1.08995 * 109.46972 * 334.53797 * 4 2 1 37 37 H 1.08997 * 109.46760 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47080 * 300.00147 * 9 7 6 39 39 H 1.09005 * 109.46721 * 60.00164 * 9 7 6 40 40 H 1.09006 * 109.47101 * 60.00202 * 11 10 7 41 41 H 1.08999 * 109.47097 * 180.02562 * 11 10 7 42 42 H 1.09006 * 109.47154 * 300.00096 * 11 10 7 43 43 H 1.08998 * 109.47035 * 64.63069 * 12 10 7 44 44 H 1.09005 * 109.47157 * 184.62742 * 12 10 7 45 45 H 1.09004 * 109.47375 * 304.62554 * 12 10 7 46 46 H 0.96702 * 113.99878 * 180.02562 * 13 10 7 47 47 H 1.09000 * 109.47628 * 64.42393 * 18 17 16 48 48 H 1.08996 * 109.47211 * 184.43000 * 18 17 16 49 49 H 1.09002 * 109.46423 * 304.42125 * 18 17 16 50 50 H 1.08995 * 109.46967 * 300.00040 * 21 19 17 51 51 H 1.09003 * 109.46995 * 60.00030 * 21 19 17 52 52 H 1.09002 * 109.46988 * 179.97438 * 21 19 17 53 53 H 0.97001 * 120.00366 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4023 -1.6728 -1.3776 6 6 1.6160 -2.3491 -2.2688 7 6 0.2222 -2.8644 -2.0183 8 1 -0.1249 -2.5157 -1.0457 9 6 -0.7166 -2.3471 -3.1102 10 6 0.2329 -4.3942 -2.0376 11 6 0.6733 -4.8838 -3.4186 12 6 1.2085 -4.9108 -0.9783 13 8 -1.0797 -4.8833 -1.7551 14 7 2.2955 -2.4660 -3.3743 15 7 3.4486 -1.9134 -3.2434 16 6 3.5654 -1.4054 -2.0392 17 7 4.6638 -0.7285 -1.5336 18 6 5.3506 -1.5290 -0.5112 19 6 5.5871 -0.3451 -2.6100 20 1 5.0486 0.2308 -3.3627 21 6 6.1716 -1.6044 -3.2532 22 6 6.7030 0.4921 -2.0401 23 1 6.7245 0.7167 -0.9840 24 6 7.6966 0.9715 -2.8672 25 7 7.6703 0.6986 -4.1534 26 14 9.0803 2.0089 -2.1606 27 1 9.8141 1.2235 -1.1360 28 1 10.0135 2.3964 -3.2487 29 1 8.5133 3.2307 -1.5354 30 1 -0.5400 -0.9313 0.0865 31 1 -0.5400 0.9313 -0.0864 32 1 3.1317 1.1079 0.0900 33 1 1.8694 1.8368 -0.9316 34 1 1.7344 1.9146 0.8415 35 1 2.9782 -1.1967 0.5821 36 1 1.4416 -2.0838 0.4409 37 1 -1.7247 -2.7202 -2.9292 38 1 -0.7242 -1.2572 -3.0964 39 1 -0.3696 -2.6959 -4.0829 40 1 1.6746 -4.5107 -3.6340 41 1 0.6805 -5.9737 -3.4324 42 1 -0.0218 -4.5158 -4.1733 43 1 0.8502 -4.6317 0.0126 44 1 1.2781 -5.9964 -1.0469 45 1 2.1923 -4.4723 -1.1457 46 1 -1.1475 -5.8479 -1.7505 47 1 5.7585 -2.4304 -0.9688 48 1 6.1607 -0.9443 -0.0755 49 1 4.6422 -1.8064 0.2694 50 1 6.7100 -2.1803 -2.5006 51 1 5.3645 -2.2099 -3.6654 52 1 6.8564 -1.3199 -4.0521 53 1 8.3695 1.0356 -4.7351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515759398.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:32 Heat of formation + Delta-G solvation = 46.453819 kcal Electronic energy + Delta-G solvation = -32128.349233 eV Core-core repulsion = 28230.150166 eV Total energy + Delta-G solvation = -3898.199067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.01776 -39.81773 -38.88401 -37.83848 -35.21681 -34.82107 -34.16060 -31.54640 -30.78810 -30.03404 -28.48237 -28.41161 -27.88101 -27.24091 -26.69736 -25.14395 -23.36580 -22.76531 -21.39955 -20.35237 -19.53430 -18.34574 -17.87093 -17.54877 -17.29080 -17.14375 -16.46746 -16.17298 -16.02465 -15.45662 -15.39191 -15.19273 -15.01703 -14.84676 -14.60344 -14.29028 -14.11283 -13.63207 -13.40658 -13.34034 -13.14514 -13.09635 -12.92689 -12.86105 -12.82776 -12.79214 -12.65880 -12.60265 -12.47992 -12.41076 -12.16497 -12.09766 -11.93202 -11.84809 -11.64256 -11.33503 -10.92050 -10.87967 -10.79110 -10.47207 -10.34072 -10.16564 -9.02469 -8.10251 -6.25212 0.73919 0.97611 1.44549 1.46941 1.54147 1.68158 1.92496 2.42862 2.98141 3.16221 3.20165 3.46186 3.57018 3.67745 3.75658 3.87274 3.97305 4.04046 4.14505 4.25095 4.34036 4.39548 4.52036 4.56624 4.64834 4.65127 4.68650 4.73114 4.79004 4.80200 4.87146 4.90861 4.94992 4.98942 5.02052 5.04933 5.12660 5.14518 5.16542 5.19157 5.28100 5.37438 5.48489 5.52911 5.55942 5.65430 5.68589 5.78472 5.89456 6.09992 6.25478 6.65262 6.84356 6.90383 7.43641 7.93036 8.95888 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.003716 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.197803 B = 7533.057577 C = 8419.761935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.162 4.162 3 C -0.115 4.115 4 C 0.137 3.863 5 N -0.466 5.466 6 C 0.188 3.812 7 C 0.020 3.980 8 H 0.106 0.894 9 C -0.134 4.134 10 C 0.148 3.852 11 C -0.184 4.184 12 C -0.174 4.174 13 O -0.559 6.559 14 N -0.313 5.313 15 N -0.362 5.362 16 C 0.369 3.631 17 N -0.452 5.452 18 C 0.038 3.962 19 C 0.245 3.755 20 H -0.004 1.004 21 C -0.161 4.161 22 C -0.522 4.522 23 H 0.071 0.929 24 C 0.013 3.987 25 N -0.919 5.919 26 Si 0.966 3.034 27 H -0.265 1.265 28 H -0.289 1.289 29 H -0.270 1.270 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.035 0.965 46 H 0.396 0.604 47 H 0.025 0.975 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.026 0.974 51 H 0.050 0.950 52 H 0.057 0.943 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.297 -9.444 12.763 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 C -0.172 4.172 4 C 0.016 3.984 5 N -0.160 5.160 6 C -0.081 4.081 7 C -0.001 4.001 8 H 0.124 0.876 9 C -0.191 4.191 10 C 0.107 3.893 11 C -0.241 4.241 12 C -0.232 4.232 13 O -0.367 6.367 14 N -0.151 5.151 15 N -0.206 5.206 16 C 0.011 3.989 17 N -0.176 5.176 18 C -0.109 4.109 19 C 0.139 3.861 20 H 0.014 0.986 21 C -0.220 4.220 22 C -0.560 4.560 23 H 0.089 0.911 24 C -0.186 4.186 25 N -0.558 5.558 26 Si 0.791 3.209 27 H -0.190 1.190 28 H -0.215 1.215 29 H -0.195 1.195 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.246 0.754 47 H 0.043 0.957 48 H 0.107 0.893 49 H 0.099 0.901 50 H 0.045 0.955 51 H 0.069 0.931 52 H 0.075 0.925 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.085 -8.721 11.464 23.120 hybrid contribution 1.464 0.050 0.411 1.522 sum -16.621 -8.671 11.875 22.191 Atomic orbital electron populations 1.24053 0.94353 1.03691 0.96839 1.21831 0.96032 0.94904 1.03491 1.20767 1.00287 0.94612 1.01494 1.21175 1.02489 0.96254 0.78457 1.46353 1.11501 1.44178 1.14011 1.24680 0.97061 0.99708 0.86635 1.19477 0.84391 0.94058 1.02177 0.87604 1.21736 0.99400 1.00365 0.97646 1.20738 0.83217 0.91464 0.93922 1.22607 1.02877 1.01463 0.97179 1.22472 0.98505 1.02481 0.99737 1.86424 1.28106 1.28324 1.93867 1.73835 1.00477 1.19343 1.21494 1.74743 1.12941 1.16093 1.16799 1.23035 0.89499 0.96727 0.89593 1.59219 1.06671 1.35924 1.15738 1.22428 0.99248 0.95962 0.93223 1.18854 0.88318 0.92530 0.86350 0.98591 1.22325 1.00661 0.98244 1.00776 1.21287 1.07449 1.31971 0.95303 0.91087 1.25757 1.00486 0.97409 0.94984 1.70084 1.34851 1.46052 1.04843 0.85492 0.78489 0.79099 0.77815 1.19015 1.21489 1.19518 0.86374 0.86790 0.92601 0.93774 0.89618 0.87635 0.85900 0.89147 0.93309 0.92562 0.92317 0.91197 0.91705 0.90431 0.90469 0.94546 0.75375 0.95657 0.89279 0.90082 0.95488 0.93118 0.92455 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 13.72 67.79 0.93 -1.62 16 2 C -0.16 -3.51 5.64 -16.48 -0.09 -3.61 16 3 C -0.11 -2.89 10.05 71.24 0.72 -2.18 16 4 C 0.14 3.06 5.72 85.63 0.49 3.55 16 5 N -0.47 -14.53 2.79 -518.93 -1.45 -15.98 16 6 C 0.19 5.81 4.88 137.64 0.67 6.48 16 7 C 0.02 0.44 2.34 -11.54 -0.03 0.41 16 8 H 0.11 1.92 5.48 -2.39 -0.01 1.90 16 9 C -0.13 -2.97 8.62 71.98 0.62 -2.35 16 10 C 0.15 2.83 0.86 -10.80 -0.01 2.82 16 11 C -0.18 -4.13 8.07 71.98 0.58 -3.55 16 12 C -0.17 -3.12 8.63 71.98 0.62 -2.50 16 13 O -0.56 -8.29 12.39 -148.98 -1.85 -10.13 16 14 N -0.31 -12.50 9.93 -49.53 -0.49 -13.00 16 15 N -0.36 -16.83 8.97 -58.01 -0.52 -17.35 16 16 C 0.37 15.17 6.68 260.12 1.74 16.90 16 17 N -0.45 -19.40 4.77 -711.00 -3.39 -22.79 16 18 C 0.04 1.37 8.67 127.69 1.11 2.48 16 19 C 0.25 13.00 2.08 44.17 0.09 13.09 16 20 H 0.00 -0.24 8.11 -2.38 -0.02 -0.26 16 21 C -0.16 -8.54 8.27 71.98 0.60 -7.95 16 22 C -0.52 -28.18 7.94 25.60 0.20 -27.98 16 23 H 0.07 3.63 6.75 -2.91 -0.02 3.61 16 24 C 0.01 0.71 5.30 84.65 0.45 1.16 16 25 N -0.92 -54.41 11.32 21.45 0.24 -54.17 16 26 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 30 H 0.12 1.52 6.54 -2.91 -0.02 1.50 16 31 H 0.11 1.73 8.05 -2.91 -0.02 1.70 16 32 H 0.05 1.65 7.97 -2.39 -0.02 1.63 16 33 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 2.34 5.83 -2.39 -0.01 2.32 16 36 H 0.12 1.91 7.39 -2.39 -0.02 1.89 16 37 H 0.09 1.65 7.73 -2.39 -0.02 1.63 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.43 6.39 -2.38 -0.02 1.42 16 40 H 0.06 1.77 5.81 -2.38 -0.01 1.75 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.48 6.39 -2.38 -0.02 1.46 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.04 0.87 6.99 -2.38 -0.02 0.86 16 46 H 0.40 2.86 9.05 -74.06 -0.67 2.19 16 47 H 0.02 0.96 6.26 -2.39 -0.01 0.95 16 48 H 0.09 3.25 6.54 -2.39 -0.02 3.24 16 49 H 0.08 2.26 5.90 -2.39 -0.01 2.25 16 50 H 0.03 1.33 6.37 -2.39 -0.02 1.32 16 51 H 0.05 2.69 5.41 -2.39 -0.01 2.68 16 52 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 53 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -71.44 400.69 3.51 -67.93 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.25 Total: 25.17 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 8.68 Total: -4.82 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -5.61 Total: -123.28 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.85 Total: -10.13 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -71.44 3.51 -67.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515759398.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.380 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds